Wall clock time and date at job start Tue Mar 31 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.88936 * 322.57795 * 10 9 7 12 12 C 1.55161 * 111.00044 * 86.45709 * 10 9 7 13 13 C 1.54325 * 102.93809 * 153.57615 * 12 10 9 14 14 N 1.47020 * 107.27263 * 337.80386 * 13 12 10 15 15 C 1.34776 * 125.64657 * 178.92146 * 14 13 12 16 16 O 1.21289 * 120.00029 * 180.02562 * 15 14 13 17 17 C 1.50703 * 120.00145 * 0.02612 * 15 14 13 18 18 C 1.53007 * 109.46911 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.46962 * 179.97438 * 18 17 15 20 20 H 1.09003 * 109.82345 * 305.70712 * 19 18 17 21 21 C 1.54384 * 109.83165 * 184.81485 * 19 18 17 22 22 C 1.55446 * 102.18495 * 219.18516 * 21 19 18 23 23 C 1.54945 * 100.99460 * 34.03701 * 22 21 19 24 24 O 1.43241 * 109.83075 * 66.58616 * 19 18 17 25 25 C 1.47418 * 108.70511 * 358.94205 * 14 13 12 26 26 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 27 27 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 28 28 H 1.08997 * 110.71682 * 271.93308 * 12 10 9 29 29 H 1.08994 * 110.72209 * 35.03295 * 12 10 9 30 30 H 1.09003 * 109.88433 * 97.22177 * 13 12 10 31 31 H 1.09004 * 109.88210 * 218.38952 * 13 12 10 32 32 H 1.09000 * 109.46930 * 299.99571 * 17 15 14 33 33 H 1.08997 * 109.47261 * 60.00382 * 17 15 14 34 34 H 1.08991 * 109.47024 * 299.99860 * 18 17 15 35 35 H 1.09005 * 109.46965 * 60.00024 * 18 17 15 36 36 H 1.08998 * 110.84633 * 337.32548 * 21 19 18 37 37 H 1.08996 * 110.84397 * 100.94245 * 21 19 18 38 38 H 1.09000 * 111.05809 * 276.12133 * 22 21 19 39 39 H 1.09000 * 111.18505 * 152.01252 * 22 21 19 40 40 H 1.09000 * 110.31156 * 204.69200 * 23 22 21 41 41 H 1.08999 * 110.39205 * 82.55857 * 23 22 21 42 42 H 1.08997 * 110.37169 * 265.29004 * 25 14 13 43 43 H 1.08997 * 110.36823 * 142.96226 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9522 -3.5887 -0.6211 12 6 2.4147 -4.0942 1.4436 13 6 2.5182 -5.6294 1.3244 14 7 1.7448 -6.0283 0.1394 15 6 1.6045 -7.2877 -0.3195 16 8 0.9402 -7.5012 -1.3116 17 6 2.2729 -8.4308 0.4000 18 6 1.9557 -9.7425 -0.3210 19 6 2.6348 -10.9029 0.4091 20 1 3.7014 -10.7022 0.5106 21 6 2.4211 -12.2138 -0.3780 22 6 2.1821 -13.2448 0.7605 23 6 1.4372 -12.3699 1.8000 24 8 2.0470 -11.0728 1.7042 25 6 1.1486 -4.8226 -0.4639 26 1 -0.4850 -0.8400 -0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 3.3686 -3.6662 1.7517 29 1 1.6242 -3.8110 2.1385 30 1 3.5610 -5.9223 1.2023 31 1 2.1007 -6.0993 2.2149 32 1 3.3514 -8.2728 0.4100 33 1 1.9035 -8.4811 1.4242 34 1 0.8773 -9.9002 -0.3306 35 1 2.3248 -9.6924 -1.3455 36 1 1.5464 -12.1400 -1.0242 37 1 3.3102 -12.4694 -0.9544 38 1 3.1270 -13.6119 1.1612 39 1 1.5558 -14.0694 0.4201 40 1 1.5701 -12.7774 2.8022 41 1 0.3770 -12.3085 1.5546 42 1 0.1319 -4.6785 -0.0985 43 1 1.1544 -4.8999 -1.5512 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018544463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:36 Heat of formation + Delta-G solvation = -79.338573 kcal Electronic energy + Delta-G solvation = -22016.364832 eV Core-core repulsion = 18675.257243 eV Total energy + Delta-G solvation = -3341.107588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10002 -39.52367 -37.39511 -34.41475 -33.66699 -32.42946 -31.55950 -29.48944 -29.11894 -27.42175 -24.68591 -23.31793 -22.73677 -21.96857 -21.02277 -20.23281 -18.92162 -17.49619 -17.30294 -17.07400 -16.16864 -16.04998 -15.28635 -14.88486 -14.76496 -14.27857 -13.82255 -13.78643 -13.66308 -13.28906 -13.00006 -12.72858 -12.57343 -12.17943 -12.06560 -12.00138 -11.66428 -11.66024 -11.23217 -11.19664 -11.04807 -10.99308 -10.69723 -10.66439 -10.25901 -10.04171 -9.80664 -9.66445 -9.24051 -8.96802 -8.43782 -7.12562 -6.15833 -3.17667 2.78355 3.13214 3.49579 3.51963 3.54248 3.68405 4.12715 4.33668 4.49828 4.62605 4.64637 4.81285 4.82285 4.99951 5.01266 5.04996 5.25281 5.29679 5.31306 5.34312 5.38614 5.46936 5.49572 5.51974 5.55920 5.61658 5.70105 5.71437 5.91813 5.94500 5.99079 6.08195 6.17334 6.31578 6.50590 6.54887 6.74164 6.83485 7.72087 7.75434 8.31429 8.69559 9.14081 10.00625 10.14279 11.32236 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.053272 B = 0.002602 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.479307 B =10760.377485 C =10918.036628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.043 4.043 3 Si 1.084 2.916 4 H -0.295 1.295 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.335 4.335 8 H 0.067 0.933 9 N -0.727 5.727 10 C 0.177 3.823 11 H 0.064 0.936 12 C -0.154 4.154 13 C 0.102 3.898 14 N -0.614 5.614 15 C 0.524 3.476 16 O -0.550 6.550 17 C -0.131 4.131 18 C -0.112 4.112 19 C 0.079 3.921 20 H 0.081 0.919 21 C -0.152 4.152 22 C -0.157 4.157 23 C 0.049 3.951 24 O -0.378 6.378 25 C 0.098 3.902 26 H 0.256 0.744 27 H 0.369 0.631 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 -25.352 3.405 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.241 4.241 3 Si 0.915 3.085 4 H -0.222 1.222 5 H -0.213 1.213 6 H -0.221 1.221 7 C -0.466 4.466 8 H 0.085 0.915 9 N -0.369 5.369 10 C 0.065 3.935 11 H 0.082 0.918 12 C -0.195 4.195 13 C -0.021 4.021 14 N -0.349 5.349 15 C 0.313 3.687 16 O -0.429 6.429 17 C -0.170 4.170 18 C -0.150 4.150 19 C 0.021 3.979 20 H 0.099 0.901 21 C -0.189 4.189 22 C -0.195 4.195 23 C -0.027 4.027 24 O -0.297 6.297 25 C -0.025 4.025 26 H 0.067 0.933 27 H 0.203 0.797 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.658 -23.677 2.985 24.775 hybrid contribution -0.064 -1.833 0.022 1.834 sum 6.594 -25.509 3.008 26.519 Atomic orbital electron populations 1.70849 1.06081 1.28580 1.53077 1.25825 0.97036 1.01097 1.00105 0.83181 0.73883 0.75208 0.76268 1.22235 1.21339 1.22090 1.20038 0.92067 0.85431 1.49032 0.91517 1.42274 1.04853 1.00362 1.89393 1.21234 0.94111 0.85144 0.93019 0.91842 1.23383 1.02859 0.91462 1.01827 1.22098 0.95270 0.97336 0.87444 1.48493 1.50971 1.06293 1.29099 1.20404 0.81069 0.82658 0.84522 1.90683 1.41654 1.83867 1.26678 1.21574 1.01611 0.92713 1.01151 1.21738 1.02121 0.92169 0.99013 1.22824 0.97368 0.94651 0.83016 0.90097 1.23206 1.03348 0.94069 0.98317 1.23289 1.01484 0.98580 0.96150 1.23367 0.96818 0.82925 0.99611 1.88445 1.74321 1.34255 1.32696 1.22503 0.97381 0.83909 0.98734 0.93255 0.79703 0.90658 0.90703 0.91786 0.91878 0.89197 0.88428 0.90703 0.90193 0.90113 0.89916 0.90420 0.89978 0.89840 0.92228 0.91664 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.89 13.70 55.49 0.76 -28.13 16 2 C -0.04 -1.22 5.50 -17.43 -0.10 -1.32 16 3 Si 1.08 25.64 29.92 -169.99 -5.09 20.56 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.33 -9.22 9.98 -15.06 -0.15 -9.37 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.73 -17.92 5.28 -51.35 -0.27 -18.19 16 10 C 0.18 3.50 3.69 -65.78 -0.24 3.26 16 11 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 12 C -0.15 -2.57 6.65 -24.89 -0.17 -2.73 16 13 C 0.10 1.38 6.49 -3.06 -0.02 1.36 16 14 N -0.61 -9.76 3.33 -170.52 -0.57 -10.33 16 15 C 0.52 8.24 7.85 -10.98 -0.09 8.16 16 16 O -0.55 -10.56 16.24 5.55 0.09 -10.47 16 17 C -0.13 -1.49 4.80 -27.88 -0.13 -1.63 16 18 C -0.11 -1.19 4.07 -26.73 -0.11 -1.30 16 19 C 0.08 0.69 3.51 -26.01 -0.09 0.60 16 20 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 21 C -0.15 -1.03 6.56 -24.71 -0.16 -1.19 16 22 C -0.16 -0.92 7.16 -24.40 -0.17 -1.10 16 23 C 0.05 0.37 7.78 38.18 0.30 0.67 16 24 O -0.38 -3.86 10.64 -35.23 -0.37 -4.24 16 25 C 0.10 1.79 6.53 -2.53 -0.02 1.78 16 26 H 0.26 7.75 6.77 -40.82 -0.28 7.47 16 27 H 0.37 9.43 6.54 -40.82 -0.27 9.16 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.09 7.89 -51.93 -0.41 0.68 16 34 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 1.23 8.00 -51.93 -0.42 0.82 16 43 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -33.14 347.78 -8.67 -41.81 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.31 Total: 6.58 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.15 Total: -2.83 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.08 Total: -56.65 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.28 Total: -14.71 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.09 Total: 20.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.14 -8.67 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018544463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.527 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds