Wall clock time and date at job start Tue Mar 31 2020 06:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00343 * 2 1 4 4 H 1.48498 * 109.46699 * 269.99811 * 3 2 1 5 5 H 1.48501 * 109.46977 * 29.99944 * 3 2 1 6 6 H 1.48499 * 109.47208 * 149.99952 * 3 2 1 7 7 C 1.38812 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99788 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00194 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00214 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.63876 * 323.31383 * 10 9 7 12 12 C 1.55156 * 110.71754 * 86.45250 * 10 9 7 13 13 C 1.54906 * 101.61451 * 154.02296 * 12 10 9 14 14 N 1.47471 * 104.81210 * 323.04512 * 13 12 10 15 15 C 1.34776 * 125.62717 * 204.04395 * 14 13 12 16 16 O 1.21276 * 119.99876 * 180.02562 * 15 14 13 17 17 C 1.50704 * 120.00169 * 0.02852 * 15 14 13 18 18 C 1.53003 * 109.47102 * 179.97438 * 17 15 14 19 19 H 1.08997 * 109.47987 * 304.97803 * 18 17 15 20 20 C 1.53092 * 109.48007 * 184.94154 * 18 17 15 21 21 C 1.53172 * 109.16355 * 182.40769 * 20 18 17 22 22 C 1.53181 * 109.03552 * 56.97984 * 21 20 18 23 23 C 1.53091 * 109.16298 * 303.02158 * 22 21 20 24 24 O 1.42896 * 109.41782 * 57.60718 * 23 22 21 25 25 C 1.47017 * 108.71970 * 24.07007 * 14 13 12 26 26 H 0.97007 * 119.99993 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99353 * 0.02562 * 9 7 2 28 28 H 1.09002 * 111.00677 * 272.11880 * 12 10 9 29 29 H 1.09002 * 111.00564 * 35.93138 * 12 10 9 30 30 H 1.09008 * 110.36753 * 81.85112 * 13 12 10 31 31 H 1.09001 * 110.37094 * 204.16995 * 13 12 10 32 32 H 1.09002 * 109.47089 * 299.99627 * 17 15 14 33 33 H 1.09000 * 109.46830 * 59.99916 * 17 15 14 34 34 H 1.09000 * 109.52228 * 302.31703 * 20 18 17 35 35 H 1.09000 * 109.51852 * 62.50396 * 20 18 17 36 36 H 1.09003 * 109.54289 * 297.11755 * 21 20 18 37 37 H 1.09002 * 109.61714 * 176.89342 * 21 20 18 38 38 H 1.09004 * 109.52296 * 183.11323 * 22 21 20 39 39 H 1.09002 * 109.57344 * 62.95703 * 22 21 20 40 40 H 1.09002 * 109.48248 * 297.61723 * 23 22 21 41 41 H 1.09007 * 109.47854 * 177.59171 * 23 22 21 42 42 H 1.08998 * 109.88206 * 239.55467 * 25 14 13 43 43 H 1.09007 * 109.88177 * 118.39340 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0014 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4711 0.0022 11 1 3.5954 -3.2124 0.6119 12 6 4.3092 -2.9923 -1.4458 13 6 5.5869 -3.8552 -1.2954 14 7 6.4266 -3.1205 -0.3310 15 6 7.7670 -3.2141 -0.2263 16 8 8.3571 -2.5606 0.6076 17 6 8.5325 -4.1308 -1.1455 18 6 10.0252 -4.0496 -0.8195 19 1 10.3524 -3.0112 -0.8707 20 6 10.8148 -4.8845 -1.8310 21 6 12.3011 -4.8471 -1.4627 22 6 12.4732 -5.3562 -0.0282 23 6 11.6195 -4.5031 0.9136 24 8 10.2538 -4.5570 0.4967 25 6 5.5596 -2.2698 0.4973 26 1 -0.4850 0.8401 0.0004 27 1 3.8645 -0.3623 0.0014 28 1 3.4616 -3.6009 -1.7609 29 1 4.4742 -2.1674 -2.1390 30 1 5.3350 -4.8411 -0.9046 31 1 6.0987 -3.9454 -2.2535 32 1 8.1855 -5.1551 -1.0086 33 1 8.3697 -3.8271 -2.1796 34 1 10.4598 -5.9149 -1.8090 35 1 10.6767 -4.4720 -2.8305 36 1 12.6685 -3.8233 -1.5327 37 1 12.8635 -5.4839 -2.1456 38 1 13.5213 -5.2811 0.2616 39 1 12.1525 -6.3963 0.0311 40 1 11.9679 -3.4707 0.8852 41 1 11.7048 -4.8877 1.9301 42 1 5.8482 -1.2248 0.3841 43 1 5.6385 -2.5671 1.5431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018699366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:06 Heat of formation + Delta-G solvation = -97.361352 kcal Electronic energy + Delta-G solvation = -22480.959877 eV Core-core repulsion = 19139.070763 eV Total energy + Delta-G solvation = -3341.889115 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24057 -40.10401 -38.61448 -36.01162 -34.49568 -33.95453 -33.41560 -31.30913 -30.08142 -28.72502 -25.74333 -25.03169 -24.15026 -23.22406 -21.69162 -21.14902 -20.19326 -19.72548 -18.04457 -17.67613 -17.27077 -16.88141 -16.42547 -16.22488 -15.77499 -15.48137 -15.30972 -15.15811 -14.73933 -14.46983 -14.19700 -13.77316 -13.58389 -13.50213 -13.32533 -13.16763 -13.09888 -12.86259 -12.69382 -12.26497 -12.20515 -12.14942 -11.94272 -11.82565 -11.69160 -11.61457 -11.25143 -10.99332 -10.85731 -10.29822 -9.66379 -9.34727 -8.03816 -5.38177 1.37907 1.39051 1.46095 1.67776 1.95928 2.46491 2.86613 3.26079 3.46401 3.53587 3.75796 3.80077 3.93401 3.96364 4.00786 4.14916 4.22787 4.25127 4.34381 4.38015 4.48338 4.49942 4.56152 4.67080 4.72996 4.78900 4.85934 4.91074 4.98637 4.99711 5.10006 5.15385 5.18996 5.20764 5.28816 5.41533 5.42524 5.75766 6.19892 6.36469 6.57835 7.03951 7.19222 7.79117 7.96988 9.17064 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039454 B = 0.003112 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.511784 B = 8994.262754 C = 9254.795779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.260 1.260 7 C -0.227 4.227 8 H 0.067 0.933 9 N -0.747 5.747 10 C 0.167 3.833 11 H 0.067 0.933 12 C -0.146 4.146 13 C 0.106 3.894 14 N -0.618 5.618 15 C 0.520 3.480 16 O -0.583 6.583 17 C -0.121 4.121 18 C 0.100 3.900 19 H 0.043 0.957 20 C -0.144 4.144 21 C -0.124 4.124 22 C -0.151 4.151 23 C 0.055 3.945 24 O -0.397 6.397 25 C 0.108 3.892 26 H 0.258 0.742 27 H 0.364 0.636 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.847 -13.809 -6.976 30.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.251 4.251 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.185 1.185 7 C -0.358 4.358 8 H 0.085 0.915 9 N -0.390 5.390 10 C 0.058 3.942 11 H 0.085 0.915 12 C -0.186 4.186 13 C -0.016 4.016 14 N -0.352 5.352 15 C 0.310 3.690 16 O -0.463 6.463 17 C -0.160 4.160 18 C 0.042 3.958 19 H 0.061 0.939 20 C -0.181 4.181 21 C -0.162 4.162 22 C -0.189 4.189 23 C -0.022 4.022 24 O -0.317 6.317 25 C -0.017 4.017 26 H 0.067 0.933 27 H 0.197 0.803 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.139 0.861 33 H 0.157 0.843 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 25.877 -13.630 -6.403 29.940 hybrid contribution -0.035 1.626 0.360 1.666 sum 25.842 -12.004 -6.043 29.128 Atomic orbital electron populations 1.69859 1.06910 1.26625 1.59614 1.25404 0.96008 1.00888 1.02762 0.85512 0.78449 0.80336 0.78082 1.20312 1.22310 1.18490 1.19000 0.82010 0.93691 1.41069 0.91550 1.42721 1.02772 1.03335 1.90127 1.21346 0.89027 0.87935 0.95872 0.91474 1.23339 0.97510 0.99768 0.98003 1.22572 0.90275 0.95393 0.93357 1.48628 1.05719 1.44219 1.36677 1.21055 0.80374 0.82823 0.84714 1.90683 1.68730 1.47860 1.39059 1.21818 0.92960 1.00900 1.00328 1.21896 0.93829 0.96679 0.83361 0.93875 1.22191 0.95417 1.01373 0.99133 1.21619 0.96122 1.01868 0.96555 1.22171 1.00768 1.00278 0.95655 1.22651 0.81631 0.98980 0.98897 1.87939 1.27088 1.84110 1.32515 1.21935 0.90275 0.94632 0.94822 0.93302 0.80301 0.89620 0.91571 0.89226 0.87256 0.86126 0.84288 0.90073 0.88833 0.92116 0.89634 0.89597 0.90924 0.94197 0.88883 0.93212 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.96 13.97 21.65 0.30 -61.65 16 2 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 3 Si 0.95 45.69 27.74 68.60 1.90 47.59 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.26 -11.65 6.52 99.48 0.65 -11.00 16 7 C -0.23 -12.54 10.46 84.03 0.88 -11.66 16 8 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 9 N -0.75 -34.16 5.06 -317.34 -1.60 -35.76 16 10 C 0.17 6.04 3.58 46.18 0.17 6.21 16 11 H 0.07 2.49 8.12 -2.38 -0.02 2.47 16 12 C -0.15 -4.15 6.77 31.98 0.22 -3.94 16 13 C 0.11 2.16 6.69 86.85 0.58 2.74 16 14 N -0.62 -17.18 3.33 -811.69 -2.70 -19.88 16 15 C 0.52 14.93 7.73 87.66 0.68 15.60 16 16 O -0.58 -22.36 15.75 10.77 0.17 -22.19 16 17 C -0.12 -2.15 4.42 29.85 0.13 -2.02 16 18 C 0.10 1.98 2.19 30.63 0.07 2.05 16 19 H 0.04 1.02 7.96 -2.39 -0.02 1.00 16 20 C -0.14 -1.74 5.42 30.68 0.17 -1.57 16 21 C -0.12 -1.42 6.03 30.71 0.19 -1.23 16 22 C -0.15 -1.95 6.14 30.69 0.19 -1.76 16 23 C 0.05 1.05 6.84 72.01 0.49 1.55 16 24 O -0.40 -9.96 9.64 -135.19 -1.30 -11.26 16 25 C 0.11 3.66 6.62 86.73 0.57 4.24 16 26 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 27 H 0.36 16.49 5.38 -92.71 -0.50 15.99 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.09 1.52 8.14 -2.38 -0.02 1.51 16 31 H 0.11 1.47 7.48 -2.39 -0.02 1.45 16 32 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.14 1.52 7.85 -2.39 -0.02 1.50 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 41 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.05 1.84 7.70 -2.39 -0.02 1.83 16 43 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -75.18 341.29 1.98 -73.20 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.42 Total: 22.70 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 4.79 Total: 7.25 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -4.00 Total: -117.30 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -1.13 Total: -33.45 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Total: -75.18 1.98 -73.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018699366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.160 kcal (2) G-P(sol) polarization free energy of solvation -75.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds