Wall clock time and date at job start Tue Mar 31 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48501 * 109.47406 * 270.00383 * 3 2 1 5 5 H 1.48504 * 109.46888 * 30.00338 * 3 2 1 6 6 H 1.48495 * 109.47136 * 149.99729 * 3 2 1 7 7 C 1.38804 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00486 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99949 * 179.72397 * 9 7 2 11 11 H 1.08998 * 110.64436 * 325.97857 * 10 9 7 12 12 C 1.55162 * 110.71802 * 89.12010 * 10 9 7 13 13 C 1.55122 * 101.48577 * 153.73358 * 12 10 9 14 14 N 1.47419 * 104.94424 * 323.22051 * 13 12 10 15 15 C 1.34775 * 125.65253 * 204.03764 * 14 13 12 16 16 O 1.21281 * 119.99821 * 354.94476 * 15 14 13 17 17 C 1.50698 * 120.00359 * 174.93783 * 15 14 13 18 18 H 1.09000 * 108.96232 * 335.45039 * 17 15 14 19 19 C 1.54197 * 108.97953 * 216.72866 * 17 15 14 20 20 C 1.50625 * 109.06394 * 161.82548 * 19 17 15 21 21 C 1.53819 * 112.46524 * 90.32946 * 20 19 17 22 22 O 1.43988 * 113.41446 * 317.88816 * 21 20 19 23 23 C 1.40327 * 116.58041 * 317.89082 * 22 21 20 24 24 C 1.46292 * 108.97415 * 94.25010 * 17 15 14 25 25 C 1.47025 * 108.70201 * 24.00409 * 14 13 12 26 26 H 0.97006 * 120.00200 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00158 * 0.02562 * 9 7 2 28 28 H 1.09000 * 111.00023 * 271.94081 * 12 10 9 29 29 H 1.09006 * 111.00631 * 35.78930 * 12 10 9 30 30 H 1.08998 * 110.41835 * 204.29436 * 13 12 10 31 31 H 1.09003 * 110.30059 * 82.08824 * 13 12 10 32 32 H 1.08997 * 109.54174 * 281.70222 * 19 17 15 33 33 H 1.08996 * 109.53957 * 41.95099 * 19 17 15 34 34 H 1.09000 * 108.88573 * 329.56039 * 20 19 17 35 35 H 1.08996 * 108.80688 * 211.04226 * 20 19 17 36 36 H 1.09000 * 108.69756 * 196.87016 * 21 20 19 37 37 H 1.09001 * 108.59500 * 78.82793 * 21 20 19 38 38 H 1.08996 * 109.59712 * 335.27712 * 23 22 21 39 39 H 1.09004 * 109.72773 * 214.87879 * 23 22 21 40 40 H 1.08996 * 108.93973 * 302.76326 * 24 17 15 41 41 H 1.09003 * 108.93284 * 61.36479 * 24 17 15 42 42 H 1.09006 * 109.88130 * 239.52200 * 25 14 13 43 43 H 1.09000 * 109.88419 * 118.35653 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0072 11 1 2.9798 -3.5653 -0.5819 12 6 2.3585 -4.1248 1.4413 13 6 2.4647 -5.6609 1.2538 14 7 1.4450 -5.9918 0.2419 15 6 0.8558 -7.1937 0.0841 16 8 1.2201 -8.1396 0.7501 17 6 -0.2556 -7.3622 -0.9195 18 1 -0.7301 -6.3955 -1.0882 19 6 -1.3025 -8.3400 -0.3490 20 6 -2.5934 -8.1764 -1.1078 21 6 -2.6805 -9.1096 -2.3275 22 8 -1.4513 -9.1937 -3.0726 23 6 -0.7591 -7.9907 -3.2797 24 6 0.3109 -7.8406 -2.1806 25 6 1.1765 -4.7933 -0.5663 26 1 -0.4851 0.8401 -0.0004 27 1 0.3555 -2.3880 -0.0005 28 1 3.2988 -3.7061 1.8000 29 1 1.5380 -3.8701 2.1123 30 1 2.2496 -6.1742 2.1910 31 1 3.4577 -5.9302 0.8938 32 1 -0.9430 -9.3632 -0.4576 33 1 -1.4693 -8.1209 0.7056 34 1 -2.6747 -7.1438 -1.4472 35 1 -3.4249 -8.3935 -0.4375 36 1 -3.4665 -8.7466 -2.9898 37 1 -2.9489 -10.1082 -1.9826 38 1 -1.4561 -7.1543 -3.2281 39 1 -0.2786 -8.0065 -4.2580 40 1 1.0686 -7.1338 -2.5188 41 1 0.7827 -8.8086 -2.0117 42 1 0.1243 -4.5201 -0.4859 43 1 1.4337 -4.9835 -1.6083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018779508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:13 Heat of formation + Delta-G solvation = -74.993665 kcal Electronic energy + Delta-G solvation = -22990.232050 eV Core-core repulsion = 19649.312871 eV Total energy + Delta-G solvation = -3340.919179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52695 -38.95903 -37.34065 -34.81321 -34.11503 -32.81269 -31.45962 -29.81652 -27.68698 -27.30341 -26.06169 -23.83550 -22.98240 -21.24725 -20.74882 -20.13544 -19.02775 -17.55283 -17.41885 -16.51862 -16.23741 -15.90317 -15.34152 -15.02307 -14.66591 -14.34605 -13.77115 -13.54990 -13.40535 -13.18638 -13.14540 -12.80517 -12.51213 -12.40652 -11.97117 -11.65020 -11.54157 -11.49826 -11.23677 -10.91857 -10.87264 -10.79799 -10.77214 -10.61188 -10.36455 -10.15834 -9.87463 -9.80261 -9.37813 -9.03069 -8.42378 -7.11757 -5.89228 -3.19868 2.76158 3.13294 3.36671 3.42630 3.43862 3.64789 4.37902 4.41707 4.52606 4.65131 4.77899 4.84544 5.05974 5.06987 5.08817 5.27720 5.30591 5.35970 5.40632 5.43091 5.53702 5.55244 5.59176 5.71564 5.73092 5.79278 5.80728 5.90535 5.97091 6.09919 6.11344 6.15611 6.19091 6.33667 6.48239 6.58970 6.85334 7.18962 7.59455 7.71651 8.28061 8.31034 9.40086 9.93022 10.27841 11.32988 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022429 B = 0.003823 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.111733 B = 7322.525827 C = 8010.074780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.716 5.716 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.154 4.154 13 C 0.105 3.895 14 N -0.613 5.613 15 C 0.532 3.468 16 O -0.550 6.550 17 C -0.099 4.099 18 H 0.088 0.912 19 C -0.096 4.096 20 C -0.156 4.156 21 C 0.063 3.937 22 O -0.384 6.384 23 C 0.072 3.928 24 C -0.143 4.143 25 C 0.091 3.909 26 H 0.257 0.743 27 H 0.385 0.615 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 -15.499 -4.210 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.195 4.195 13 C -0.017 4.017 14 N -0.346 5.346 15 C 0.320 3.680 16 O -0.428 6.428 17 C -0.120 4.120 18 H 0.106 0.894 19 C -0.134 4.134 20 C -0.194 4.194 21 C -0.013 4.013 22 O -0.303 6.303 23 C -0.005 4.005 24 C -0.181 4.181 25 C -0.032 4.032 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.856 -16.060 -3.941 16.781 hybrid contribution 0.050 1.427 0.211 1.443 sum -2.806 -14.633 -3.730 15.360 Atomic orbital electron populations 1.69655 1.05178 1.25936 1.57078 1.24755 0.95518 0.97813 1.02435 0.86174 0.78702 0.83606 0.77588 1.21591 1.21710 1.20648 1.19221 0.91102 0.83794 1.43552 0.90930 1.42353 1.05712 0.99392 1.88184 1.21179 0.94295 0.85507 0.93007 0.91597 1.23601 1.02738 0.91882 1.01311 1.22293 0.91024 0.96796 0.91625 1.48556 1.41054 1.10261 1.34757 1.20326 0.82789 0.81137 0.83742 1.90664 1.65004 1.38792 1.48328 1.20395 0.95279 1.01392 0.94977 0.89362 1.21136 0.92972 1.00027 0.99294 1.21970 0.98926 1.00807 0.97696 1.22954 0.85811 1.00527 0.92010 1.87458 1.37247 1.31883 1.73711 1.22287 0.93302 0.87388 0.97566 1.21058 0.99550 1.03115 0.94337 1.22449 1.01133 0.85163 0.94501 0.93338 0.78032 0.90502 0.90743 0.91265 0.91967 0.90308 0.91210 0.91355 0.90324 0.93135 0.89543 0.92625 0.89345 0.90795 0.90279 0.91098 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.25 -6.41 9.97 -15.06 -0.15 -6.56 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -16.57 5.24 -51.65 -0.27 -16.85 16 10 C 0.17 3.12 3.59 -66.09 -0.24 2.88 16 11 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 12 C -0.15 -2.57 6.79 -24.46 -0.17 -2.73 16 13 C 0.11 1.60 6.89 -2.42 -0.02 1.59 16 14 N -0.61 -9.46 3.33 -170.39 -0.57 -10.03 16 15 C 0.53 8.31 6.63 -10.99 -0.07 8.24 16 16 O -0.55 -10.27 16.77 5.56 0.09 -10.18 16 17 C -0.10 -1.22 1.73 -94.34 -0.16 -1.39 16 18 H 0.09 1.04 6.30 -51.93 -0.33 0.71 16 19 C -0.10 -1.11 4.51 -27.29 -0.12 -1.23 16 20 C -0.16 -1.40 5.32 -27.49 -0.15 -1.55 16 21 C 0.06 0.55 6.67 37.58 0.25 0.81 16 22 O -0.38 -4.23 10.17 -33.70 -0.34 -4.57 16 23 C 0.07 0.70 6.38 37.74 0.24 0.94 16 24 C -0.14 -1.60 4.64 -29.34 -0.14 -1.74 16 25 C 0.09 1.41 5.94 -3.06 -0.02 1.39 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.39 9.49 7.53 -40.82 -0.31 9.18 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.98 7.82 -51.93 -0.41 0.57 16 33 H 0.07 0.85 8.01 -51.93 -0.42 0.44 16 34 H 0.07 0.61 6.83 -51.93 -0.35 0.26 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.50 6.98 -51.93 -0.36 0.14 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.80 7.98 -51.93 -0.41 0.38 16 41 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 42 H 0.07 1.11 7.17 -51.93 -0.37 0.74 16 43 H 0.07 0.92 8.00 -51.93 -0.42 0.50 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -30.50 338.08 -8.27 -38.77 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.14 Total: 7.11 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -0.83 Total: 0.32 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.11 Total: -52.95 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.25 Total: -14.75 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.50 -8.27 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018779508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.224 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds