Wall clock time and date at job start Tue Mar 31 2020 06:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00184 * 2 1 4 4 H 1.48497 * 109.47516 * 239.99708 * 3 2 1 5 5 H 1.48505 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47152 * 119.99748 * 3 2 1 7 7 C 1.38812 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00365 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99841 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00391 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.88071 * 328.87973 * 10 9 7 12 12 C 1.55153 * 111.00541 * 92.80168 * 10 9 7 13 13 C 1.54331 * 103.01843 * 153.38247 * 12 10 9 14 14 N 1.47016 * 107.26782 * 338.14287 * 13 12 10 15 15 C 1.34778 * 125.65058 * 178.84654 * 14 13 12 16 16 O 1.21284 * 120.00291 * 185.01813 * 15 14 13 17 17 C 1.50696 * 119.99872 * 5.02252 * 15 14 13 18 18 H 1.09004 * 108.94674 * 327.26682 * 17 15 14 19 19 C 1.46287 * 108.96433 * 86.03525 * 17 15 14 20 20 C 1.54204 * 112.07352 * 181.47298 * 19 17 15 21 21 C 1.50402 * 108.77266 * 282.18663 * 20 19 17 22 22 O 1.44185 * 112.77361 * 92.57891 * 21 20 19 23 23 C 1.44189 * 116.92950 * 318.47792 * 22 21 20 24 24 C 1.50415 * 112.77816 * 318.47860 * 23 22 21 25 25 C 1.47423 * 108.70359 * 358.58265 * 14 13 12 26 26 H 0.96999 * 120.00192 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99862 * 0.02562 * 9 7 2 28 28 H 1.09001 * 110.72024 * 271.93792 * 12 10 9 29 29 H 1.08998 * 110.72030 * 35.04063 * 12 10 9 30 30 H 1.09001 * 109.99541 * 218.66190 * 13 12 10 31 31 H 1.09004 * 109.77969 * 97.49533 * 13 12 10 32 32 H 1.08998 * 108.96010 * 302.14032 * 19 17 15 33 33 H 1.08999 * 108.95927 * 60.80585 * 19 17 15 34 34 H 1.09005 * 109.58594 * 41.97572 * 20 19 17 35 35 H 1.09003 * 109.58432 * 162.25565 * 20 19 17 36 36 H 1.09001 * 108.82849 * 213.42680 * 21 20 19 37 37 H 1.09007 * 108.82388 * 331.72860 * 21 20 19 38 38 H 1.08998 * 108.81679 * 79.32182 * 23 22 21 39 39 H 1.08996 * 108.82296 * 197.62298 * 23 22 21 40 40 H 1.09008 * 109.58527 * 332.78187 * 24 23 22 41 41 H 1.09002 * 109.58667 * 212.35965 * 24 23 22 42 42 H 1.09001 * 110.36717 * 143.19503 * 25 14 13 43 43 H 1.08996 * 110.36992 * 265.41200 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0074 -3.5574 -0.5269 12 6 2.2748 -4.1739 1.4462 13 6 2.3884 -5.7012 1.2561 14 7 1.7389 -6.0316 -0.0207 15 6 1.6458 -7.2637 -0.5590 16 8 1.1665 -7.4083 -1.6637 17 6 2.1373 -8.4618 0.2117 18 1 2.9905 -8.1646 0.8215 19 6 1.0668 -8.9340 1.0898 20 6 1.5068 -10.1413 1.9423 21 6 1.4791 -11.3759 1.0836 22 8 2.7507 -11.6525 0.4628 23 6 3.4768 -10.5259 -0.0687 24 6 2.5888 -9.5469 -0.7866 25 6 1.2006 -4.7930 -0.6117 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 3.1934 -3.7660 1.8679 29 1 1.4201 -3.9272 2.0760 30 1 1.8839 -6.2171 2.0731 31 1 3.4385 -5.9918 1.2238 32 1 0.7687 -8.1220 1.7530 33 1 0.2109 -9.2238 0.4804 34 1 2.5183 -9.9771 2.3138 35 1 0.8239 -10.2631 2.7831 36 1 1.1968 -12.2281 1.7018 37 1 0.7282 -11.2455 0.3042 38 1 3.9767 -10.0111 0.7518 39 1 4.2324 -10.8910 -0.7643 40 1 1.7155 -10.0668 -1.1809 41 1 3.1412 -9.0841 -1.6043 42 1 1.3114 -4.8106 -1.6960 43 1 0.1524 -4.6674 -0.3403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018779510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:16 Heat of formation + Delta-G solvation = -73.496651 kcal Electronic energy + Delta-G solvation = -22805.546532 eV Core-core repulsion = 19464.692268 eV Total energy + Delta-G solvation = -3340.854264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66285 -38.94232 -37.31244 -34.97399 -34.14096 -32.59656 -31.53973 -29.60954 -28.57448 -27.24242 -25.88376 -23.85288 -22.89359 -21.38890 -20.79833 -20.13322 -19.08655 -17.60314 -17.36346 -16.82349 -16.25249 -15.99970 -15.09372 -14.91831 -14.77272 -14.29926 -13.83616 -13.72990 -13.50048 -13.25041 -13.17681 -12.77928 -12.71998 -12.45738 -11.98681 -11.77124 -11.70531 -11.50118 -11.22290 -11.13982 -11.02749 -10.86411 -10.77531 -10.71366 -10.34244 -10.13550 -9.81645 -9.76232 -9.56075 -9.00431 -8.45687 -7.10053 -5.86447 -3.17382 2.69073 3.06407 3.38711 3.43648 3.44468 3.52001 4.26349 4.28985 4.51005 4.53519 4.60554 4.72068 4.91736 4.99192 5.11779 5.17565 5.22694 5.27315 5.30832 5.38377 5.39790 5.52377 5.53517 5.55013 5.68139 5.70566 5.76795 5.77895 5.93389 5.95611 6.00225 6.10068 6.20074 6.31558 6.49827 6.57365 6.84498 6.96605 7.60699 7.68007 8.25110 8.31020 9.42432 9.95973 10.30893 11.35639 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.044133 B = 0.003103 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.295401 B = 9019.982414 C = 9083.771065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.714 5.714 10 C 0.173 3.827 11 H 0.067 0.933 12 C -0.156 4.156 13 C 0.101 3.899 14 N -0.612 5.612 15 C 0.528 3.472 16 O -0.544 6.544 17 C -0.100 4.100 18 H 0.090 0.910 19 C -0.116 4.116 20 C -0.150 4.150 21 C 0.061 3.939 22 O -0.396 6.396 23 C 0.064 3.936 24 C -0.135 4.135 25 C 0.096 3.904 26 H 0.258 0.742 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 -20.729 5.035 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.353 5.353 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.197 4.197 13 C -0.022 4.022 14 N -0.346 5.346 15 C 0.316 3.684 16 O -0.422 6.422 17 C -0.121 4.121 18 H 0.108 0.892 19 C -0.154 4.154 20 C -0.187 4.187 21 C -0.015 4.015 22 O -0.316 6.316 23 C -0.012 4.012 24 C -0.173 4.173 25 C -0.028 4.028 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.065 -20.861 4.381 21.909 hybrid contribution 0.007 1.370 0.207 1.385 sum 5.072 -19.491 4.588 20.656 Atomic orbital electron populations 1.69646 1.05179 1.26076 1.56854 1.24774 0.95532 0.97842 1.02405 0.86238 0.78537 0.83283 0.77914 1.21137 1.21618 1.21149 1.19183 0.91034 0.83802 1.43813 0.91002 1.42256 1.05830 0.99336 1.87929 1.21284 0.94826 0.85690 0.92176 0.91546 1.23431 1.02948 0.91333 1.02025 1.22115 0.96776 0.98144 0.85201 1.48505 1.56370 1.06900 1.22842 1.20270 0.78958 0.83007 0.86145 1.90695 1.46164 1.85276 1.20046 1.20426 1.00252 0.93996 0.97472 0.89209 1.20583 0.98086 0.98670 0.98050 1.21910 1.03177 0.94822 0.98825 1.22326 0.85742 0.97754 0.95693 1.88247 1.33825 1.33022 1.76473 1.22310 0.93737 0.87917 0.97225 1.21810 1.01464 0.95987 0.98039 1.22616 0.98252 0.82940 0.98956 0.93251 0.77936 0.90660 0.90600 0.92063 0.91910 0.90999 0.91000 0.90481 0.89970 0.89555 0.92910 0.93049 0.89194 0.89825 0.89747 0.90553 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.60 9.96 -15.06 -0.15 -6.75 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -17.14 5.24 -51.35 -0.27 -17.41 16 10 C 0.17 3.26 3.72 -65.78 -0.24 3.02 16 11 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 12 C -0.16 -2.43 6.64 -24.90 -0.17 -2.60 16 13 C 0.10 1.26 6.10 -3.06 -0.02 1.24 16 14 N -0.61 -9.13 3.33 -170.52 -0.57 -9.70 16 15 C 0.53 7.84 6.73 -10.99 -0.07 7.76 16 16 O -0.54 -10.12 16.48 5.55 0.09 -10.03 16 17 C -0.10 -1.06 1.68 -94.34 -0.16 -1.22 16 18 H 0.09 0.82 6.55 -51.93 -0.34 0.48 16 19 C -0.12 -1.08 4.49 -29.29 -0.13 -1.21 16 20 C -0.15 -1.11 5.61 -27.40 -0.15 -1.26 16 21 C 0.06 0.50 6.26 35.86 0.22 0.73 16 22 O -0.40 -4.05 10.88 -35.23 -0.38 -4.43 16 23 C 0.06 0.57 6.26 35.87 0.22 0.79 16 24 C -0.14 -1.38 4.41 -27.39 -0.12 -1.50 16 25 C 0.10 1.68 6.58 -2.53 -0.02 1.67 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.39 9.91 7.76 -40.82 -0.32 9.59 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.06 0.65 7.50 -51.93 -0.39 0.26 16 31 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 32 H 0.07 0.67 7.49 -51.93 -0.39 0.28 16 33 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16 34 H 0.08 0.56 7.15 -51.93 -0.37 0.19 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.45 6.68 -51.93 -0.35 0.11 16 38 H 0.05 0.40 6.68 -51.93 -0.35 0.06 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.94 7.15 -51.92 -0.37 0.57 16 41 H 0.08 0.92 7.94 -51.93 -0.41 0.50 16 42 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 43 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 LS Contribution 335.08 15.07 5.05 5.05 Total: -1.00 -31.23 335.08 -8.25 -39.49 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.00 Total: 6.64 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.88 Total: 0.31 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.11 Total: -53.77 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.29 Total: -14.46 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.23 -8.25 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018779510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.009 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds