Wall clock time and date at job start Tue Mar 31 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47046 * 300.00262 * 3 2 1 6 6 H 1.48503 * 109.46886 * 60.00506 * 3 2 1 7 7 C 1.38815 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00209 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99646 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99823 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.90477 * 23.75502 * 10 9 7 12 12 C 1.53784 * 113.61276 * 155.00316 * 10 9 7 13 13 C 1.53776 * 87.08158 * 89.11532 * 12 10 9 14 14 H 1.08996 * 113.61742 * 270.79755 * 13 12 10 15 15 N 1.46506 * 113.61435 * 139.97955 * 13 12 10 16 16 C 1.34773 * 119.99969 * 154.72248 * 15 13 12 17 17 O 1.21281 * 120.00220 * 0.02562 * 16 15 13 18 18 C 1.50706 * 120.00080 * 180.02562 * 16 15 13 19 19 C 1.52992 * 109.47274 * 180.02562 * 18 16 15 20 20 C 1.53183 * 109.54012 * 294.82066 * 19 18 16 21 21 C 1.53103 * 109.15416 * 183.24206 * 20 19 18 22 22 O 1.42900 * 109.48940 * 57.47897 * 21 20 19 23 23 C 1.42906 * 114.09465 * 298.88626 * 22 21 20 24 24 C 1.53091 * 109.41477 * 61.15861 * 23 22 21 25 25 C 1.53776 * 113.61518 * 252.49732 * 10 9 7 26 26 H 0.97005 * 119.99669 * 359.97438 * 1 2 3 27 27 H 0.97006 * 120.00511 * 0.02562 * 9 7 2 28 28 H 1.09008 * 113.61124 * 334.56563 * 12 10 9 29 29 H 1.08999 * 113.61131 * 203.66760 * 12 10 9 30 30 H 0.97005 * 119.99811 * 335.00301 * 15 13 12 31 31 H 1.09004 * 109.46762 * 300.00389 * 18 16 15 32 32 H 1.08998 * 109.46924 * 59.99727 * 18 16 15 33 33 H 1.08999 * 109.54945 * 54.99725 * 19 18 16 34 34 H 1.08992 * 109.52498 * 303.05598 * 20 19 18 35 35 H 1.09004 * 109.52344 * 63.24956 * 20 19 18 36 36 H 1.08997 * 109.41065 * 297.49211 * 21 20 19 37 37 H 1.09001 * 109.49487 * 177.50958 * 21 20 19 38 38 H 1.09001 * 109.48268 * 301.17685 * 23 22 21 39 39 H 1.08999 * 109.49063 * 181.14599 * 23 22 21 40 40 H 1.08999 * 109.52632 * 182.48644 * 24 23 22 41 41 H 1.09000 * 109.52535 * 62.29431 * 24 23 22 42 42 H 1.09009 * 113.61629 * 156.33698 * 25 10 9 43 43 H 1.09007 * 113.61606 * 25.43359 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0662 -3.5649 0.4020 12 6 1.2604 -4.8291 0.5939 13 6 0.7197 -5.0787 -0.8239 14 1 -0.1919 -4.5246 -1.0474 15 7 0.6228 -6.4981 -1.1736 16 6 -0.2611 -6.9034 -2.1068 17 8 -0.9760 -6.0931 -2.6574 18 6 -0.3611 -8.3636 -2.4661 19 6 -1.4316 -8.5516 -3.5429 20 6 -2.8042 -8.1851 -2.9703 21 6 -3.8778 -8.4533 -4.0283 22 8 -3.8216 -9.8242 -4.4277 23 6 -2.5772 -10.2103 -5.0146 24 6 -1.4516 -10.0149 -3.9955 25 6 1.9980 -4.4016 -1.3457 26 1 -0.4850 0.8401 0.0004 27 1 0.3554 -2.3881 -0.0005 28 1 0.4946 -4.5195 1.3051 29 1 1.8875 -5.6371 0.9706 30 1 1.1920 -7.1467 -0.7305 31 1 0.6000 -8.7111 -2.8451 32 1 -0.6315 -8.9380 -1.5801 33 1 -1.2086 -7.9094 -4.3949 34 1 -3.0047 -8.7924 -2.0877 35 1 -2.8152 -7.1298 -2.6976 36 1 -3.7008 -7.8149 -4.8939 37 1 -4.8614 -8.2362 -3.6117 38 1 -2.3830 -9.5949 -5.8931 39 1 -2.6235 -11.2590 -5.3084 40 1 -0.4960 -10.2670 -4.4553 41 1 -1.6239 -10.6603 -3.1341 42 1 2.8267 -5.0928 -1.4993 43 1 1.8275 -3.7469 -2.2005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020034620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:22 Heat of formation + Delta-G solvation = -67.516980 kcal Electronic energy + Delta-G solvation = -22149.762151 eV Core-core repulsion = 18809.167185 eV Total energy + Delta-G solvation = -3340.594966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.24389 -39.23100 -37.96169 -34.73905 -34.01388 -32.65394 -31.24633 -29.92483 -28.92804 -25.11788 -24.74377 -23.79291 -23.57898 -22.43292 -20.50356 -20.07244 -18.72901 -17.38909 -16.92388 -16.32524 -16.14838 -15.90364 -15.52993 -14.91609 -14.82881 -14.55257 -14.03650 -13.96678 -13.30279 -13.05871 -12.90474 -12.65441 -12.39420 -12.25343 -12.04322 -11.89605 -11.63942 -11.45337 -11.16039 -10.90292 -10.82880 -10.73535 -10.46658 -10.25867 -10.13990 -9.90284 -9.78892 -9.71932 -9.38020 -8.92779 -8.67927 -7.01692 -5.80377 -3.10452 2.75901 3.33974 3.41978 3.47297 3.49910 3.70628 4.46348 4.51088 4.55218 4.57525 4.80165 4.93332 5.04951 5.12035 5.16518 5.21338 5.25848 5.29334 5.38433 5.39074 5.46791 5.52353 5.60939 5.64680 5.70888 5.86612 5.89329 5.98568 6.07461 6.12414 6.18399 6.24827 6.37948 6.62042 6.72159 6.78329 7.01924 7.03271 7.67399 7.69982 8.37723 8.39800 9.48626 10.04916 10.38900 11.41874 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031705 B = 0.002874 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.923768 B = 9740.617395 C =10263.631155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.165 4.165 13 C 0.125 3.875 14 H 0.113 0.887 15 N -0.720 5.720 16 C 0.507 3.493 17 O -0.536 6.536 18 C -0.136 4.136 19 C -0.074 4.074 20 C -0.156 4.156 21 C 0.061 3.939 22 O -0.387 6.387 23 C 0.061 3.939 24 C -0.152 4.152 25 C -0.184 4.184 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.395 0.605 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 -22.775 -5.525 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.058 3.942 11 H 0.086 0.914 12 C -0.205 4.205 13 C 0.021 3.979 14 H 0.131 0.869 15 N -0.370 5.370 16 C 0.293 3.707 17 O -0.413 6.413 18 C -0.176 4.176 19 C -0.093 4.093 20 C -0.194 4.194 21 C -0.015 4.015 22 O -0.306 6.306 23 C -0.016 4.016 24 C -0.189 4.189 25 C -0.226 4.226 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.229 0.771 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.709 -22.118 -5.883 22.950 hybrid contribution 0.743 0.732 0.178 1.058 sum -0.966 -21.385 -5.705 22.154 Atomic orbital electron populations 1.69677 1.05156 1.25752 1.57151 1.24790 0.95546 0.97859 1.02621 0.86092 0.78770 0.83943 0.77212 1.20486 1.21796 1.21797 1.19314 0.91124 0.83885 1.43264 0.90882 1.42209 1.05774 0.99422 1.87012 1.20909 0.95228 0.85439 0.92591 0.91424 1.23897 1.00732 0.99945 0.95907 1.22620 0.99672 0.79769 0.95846 0.86946 1.46179 1.39903 1.09845 1.41028 1.20665 0.79796 0.90769 0.79427 1.90691 1.42913 1.55490 1.52222 1.21743 1.01126 0.93994 1.00771 1.20932 0.94448 0.95894 0.97982 1.22372 0.94049 1.04273 0.98675 1.22597 0.99622 0.82343 0.96955 1.87907 1.34655 1.27574 1.80501 1.22535 0.83928 1.00504 0.94595 1.22270 0.99454 0.96860 1.00356 1.24310 0.96290 0.99744 1.02300 0.93404 0.77977 0.90922 0.90383 0.77129 0.89037 0.89061 0.90177 0.91743 0.88553 0.93081 0.88935 0.93230 0.89073 0.90882 0.90991 0.91355 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.71 -17.67 5.31 -52.64 -0.28 -17.95 16 10 C 0.17 3.33 4.56 -67.12 -0.31 3.02 16 11 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 12 C -0.16 -2.57 7.58 -25.92 -0.20 -2.77 16 13 C 0.12 2.03 4.12 -67.12 -0.28 1.76 16 14 H 0.11 2.24 7.46 -51.93 -0.39 1.85 16 15 N -0.72 -9.04 5.35 -53.02 -0.28 -9.33 16 16 C 0.51 6.80 7.57 -10.98 -0.08 6.72 16 17 O -0.54 -9.54 13.58 5.56 0.08 -9.47 16 18 C -0.14 -1.23 5.18 -27.88 -0.14 -1.38 16 19 C -0.07 -0.73 1.92 -90.44 -0.17 -0.90 16 20 C -0.16 -1.72 5.13 -26.58 -0.14 -1.85 16 21 C 0.06 0.64 6.84 37.21 0.25 0.90 16 22 O -0.39 -4.28 10.77 -35.23 -0.38 -4.66 16 23 C 0.06 0.51 6.84 37.20 0.25 0.77 16 24 C -0.15 -1.17 5.43 -26.59 -0.14 -1.31 16 25 C -0.18 -3.21 7.68 -25.92 -0.20 -3.41 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.39 10.35 7.90 -40.82 -0.32 10.03 16 28 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 30 H 0.40 3.62 8.73 -40.82 -0.36 3.26 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.10 1.30 6.05 -51.93 -0.31 0.99 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 43 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -32.65 345.41 -8.61 -41.26 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.25 Total: 10.94 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.40 Total: -5.83 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.16 Total: -54.80 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.30 Total: -14.12 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.65 -8.61 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020034620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.255 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds