Wall clock time and date at job start Tue Mar 31 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47046 * 300.00262 * 3 2 1 6 6 H 1.48503 * 109.46886 * 60.00506 * 3 2 1 7 7 C 1.38815 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00209 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99646 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99823 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.90477 * 23.75502 * 10 9 7 12 12 C 1.53784 * 113.61276 * 155.00316 * 10 9 7 13 13 C 1.53776 * 87.08158 * 89.11532 * 12 10 9 14 14 H 1.08996 * 113.61742 * 270.79755 * 13 12 10 15 15 N 1.46506 * 113.61435 * 139.97955 * 13 12 10 16 16 C 1.34773 * 119.99969 * 154.72248 * 15 13 12 17 17 O 1.21281 * 120.00220 * 0.02562 * 16 15 13 18 18 C 1.50706 * 120.00080 * 180.02562 * 16 15 13 19 19 C 1.52992 * 109.47274 * 180.02562 * 18 16 15 20 20 C 1.53183 * 109.54012 * 294.82066 * 19 18 16 21 21 C 1.53103 * 109.15416 * 183.24206 * 20 19 18 22 22 O 1.42900 * 109.48940 * 57.47897 * 21 20 19 23 23 C 1.42906 * 114.09465 * 298.88626 * 22 21 20 24 24 C 1.53091 * 109.41477 * 61.15861 * 23 22 21 25 25 C 1.53776 * 113.61518 * 252.49732 * 10 9 7 26 26 H 0.97005 * 119.99669 * 359.97438 * 1 2 3 27 27 H 0.97006 * 120.00511 * 0.02562 * 9 7 2 28 28 H 1.09008 * 113.61124 * 334.56563 * 12 10 9 29 29 H 1.08999 * 113.61131 * 203.66760 * 12 10 9 30 30 H 0.97005 * 119.99811 * 335.00301 * 15 13 12 31 31 H 1.09004 * 109.46762 * 300.00389 * 18 16 15 32 32 H 1.08998 * 109.46924 * 59.99727 * 18 16 15 33 33 H 1.08999 * 109.54945 * 54.99725 * 19 18 16 34 34 H 1.08992 * 109.52498 * 303.05598 * 20 19 18 35 35 H 1.09004 * 109.52344 * 63.24956 * 20 19 18 36 36 H 1.08997 * 109.41065 * 297.49211 * 21 20 19 37 37 H 1.09001 * 109.49487 * 177.50958 * 21 20 19 38 38 H 1.09001 * 109.48268 * 301.17685 * 23 22 21 39 39 H 1.08999 * 109.49063 * 181.14599 * 23 22 21 40 40 H 1.08999 * 109.52632 * 182.48644 * 24 23 22 41 41 H 1.09000 * 109.52535 * 62.29431 * 24 23 22 42 42 H 1.09009 * 113.61629 * 156.33698 * 25 10 9 43 43 H 1.09007 * 113.61606 * 25.43359 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0662 -3.5649 0.4020 12 6 1.2604 -4.8291 0.5939 13 6 0.7197 -5.0787 -0.8239 14 1 -0.1919 -4.5246 -1.0474 15 7 0.6228 -6.4981 -1.1736 16 6 -0.2611 -6.9034 -2.1068 17 8 -0.9760 -6.0931 -2.6574 18 6 -0.3611 -8.3636 -2.4661 19 6 -1.4316 -8.5516 -3.5429 20 6 -2.8042 -8.1851 -2.9703 21 6 -3.8778 -8.4533 -4.0283 22 8 -3.8216 -9.8242 -4.4277 23 6 -2.5772 -10.2103 -5.0146 24 6 -1.4516 -10.0149 -3.9955 25 6 1.9980 -4.4016 -1.3457 26 1 -0.4850 0.8401 0.0004 27 1 0.3554 -2.3881 -0.0005 28 1 0.4946 -4.5195 1.3051 29 1 1.8875 -5.6371 0.9706 30 1 1.1920 -7.1467 -0.7305 31 1 0.6000 -8.7111 -2.8451 32 1 -0.6315 -8.9380 -1.5801 33 1 -1.2086 -7.9094 -4.3949 34 1 -3.0047 -8.7924 -2.0877 35 1 -2.8152 -7.1298 -2.6976 36 1 -3.7008 -7.8149 -4.8939 37 1 -4.8614 -8.2362 -3.6117 38 1 -2.3830 -9.5949 -5.8931 39 1 -2.6235 -11.2590 -5.3084 40 1 -0.4960 -10.2670 -4.4553 41 1 -1.6239 -10.6603 -3.1341 42 1 2.8267 -5.0928 -1.4993 43 1 1.8275 -3.7469 -2.2005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020034620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:21 Heat of formation + Delta-G solvation = -91.202625 kcal Electronic energy + Delta-G solvation = -22150.789238 eV Core-core repulsion = 18809.167185 eV Total energy + Delta-G solvation = -3341.622052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29482 -40.24385 -39.22742 -35.80268 -35.46701 -34.23354 -31.97717 -31.76142 -29.88396 -26.52547 -26.32321 -25.07082 -24.47538 -23.72643 -21.52982 -20.91842 -20.16854 -19.36157 -17.96589 -17.40451 -16.99084 -16.91251 -16.65423 -16.44521 -15.85766 -15.67159 -15.49868 -15.08143 -14.92601 -14.39950 -14.04294 -13.71334 -13.55866 -13.37825 -13.26305 -13.07438 -12.85842 -12.75839 -12.57030 -12.23409 -12.13368 -11.93619 -11.81728 -11.71755 -11.54497 -11.32632 -11.21169 -10.92016 -10.70993 -10.37466 -9.90578 -9.04558 -7.97502 -5.27342 1.46046 1.47490 1.57512 1.71814 2.30774 2.53892 2.97528 3.34760 3.64671 3.68874 3.75662 3.81704 3.85555 3.90557 4.09673 4.16898 4.29400 4.30646 4.35386 4.45783 4.52601 4.61878 4.75000 4.78466 4.81104 4.82434 4.90775 4.93033 5.01589 5.02512 5.16398 5.17426 5.22979 5.28012 5.36633 5.43953 5.50921 5.72917 6.25203 6.26732 6.69458 7.29506 7.40691 8.05934 8.27044 9.26300 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031705 B = 0.002874 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.923768 B = 9740.617395 C =10263.631155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.297 1.297 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.083 0.917 9 N -0.724 5.724 10 C 0.149 3.851 11 H 0.078 0.922 12 C -0.139 4.139 13 C 0.132 3.868 14 H 0.066 0.934 15 N -0.704 5.704 16 C 0.499 3.501 17 O -0.589 6.589 18 C -0.124 4.124 19 C -0.076 4.076 20 C -0.154 4.154 21 C 0.062 3.938 22 O -0.403 6.403 23 C 0.051 3.949 24 C -0.142 4.142 25 C -0.170 4.170 26 H 0.251 0.749 27 H 0.371 0.629 28 H 0.058 0.942 29 H 0.126 0.874 30 H 0.418 0.582 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 -25.769 -5.077 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.224 1.224 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.038 3.962 11 H 0.096 0.904 12 C -0.178 4.178 13 C 0.026 3.974 14 H 0.084 0.916 15 N -0.356 5.356 16 C 0.288 3.712 17 O -0.469 6.469 18 C -0.163 4.163 19 C -0.095 4.095 20 C -0.191 4.191 21 C -0.015 4.015 22 O -0.322 6.322 23 C -0.025 4.025 24 C -0.179 4.179 25 C -0.212 4.212 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.256 0.744 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.125 0.875 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.678 -25.196 -5.420 25.781 hybrid contribution 0.039 1.569 -0.004 1.569 sum 0.717 -23.627 -5.424 24.253 Atomic orbital electron populations 1.69848 1.06841 1.26055 1.59545 1.25656 0.96397 1.01446 1.03717 0.85026 0.78390 0.79533 0.76529 1.18549 1.22421 1.21928 1.19755 0.91689 0.85003 1.40918 0.89957 1.42418 1.05316 1.00972 1.87483 1.21265 0.95747 0.84593 0.94558 0.90433 1.23737 1.00035 0.99172 0.94851 1.22110 0.97243 0.81635 0.96422 0.91568 1.45939 1.40206 1.08495 1.40960 1.21564 0.78686 0.92444 0.78507 1.90692 1.44847 1.57364 1.54003 1.21765 1.02452 0.90496 1.01599 1.20935 0.93831 0.97197 0.97499 1.22291 0.95380 1.02324 0.99146 1.22559 0.99832 0.82459 0.96632 1.87885 1.36301 1.27272 1.80731 1.22794 0.83311 1.01661 0.94763 1.22215 1.00241 0.94894 1.00555 1.24170 0.98135 0.99526 0.99410 0.94053 0.79740 0.92317 0.85553 0.74417 0.85795 0.86363 0.92458 0.91024 0.91745 0.93854 0.88549 0.93401 0.86960 0.88530 0.89980 0.87546 0.94983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.29 13.06 21.65 0.28 -61.01 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 3 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 7 C -0.24 -13.55 9.97 84.03 0.84 -12.71 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.72 -37.13 5.31 -320.44 -1.70 -38.83 16 10 C 0.15 5.65 4.56 45.52 0.21 5.86 16 11 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 12 C -0.14 -4.04 7.58 31.12 0.24 -3.81 16 13 C 0.13 4.22 4.12 45.51 0.19 4.40 16 14 H 0.07 2.79 7.46 -2.39 -0.02 2.77 16 15 N -0.70 -16.06 5.35 -440.04 -2.36 -18.42 16 16 C 0.50 12.82 7.57 87.66 0.66 13.49 16 17 O -0.59 -21.79 13.58 -3.03 -0.04 -21.83 16 18 C -0.12 -1.85 5.18 29.85 0.15 -1.69 16 19 C -0.08 -1.38 1.92 -10.68 -0.02 -1.40 16 20 C -0.15 -3.38 5.13 30.69 0.16 -3.23 16 21 C 0.06 1.32 6.84 72.02 0.49 1.81 16 22 O -0.40 -8.50 10.77 -148.98 -1.60 -10.11 16 23 C 0.05 0.76 6.84 72.01 0.49 1.25 16 24 C -0.14 -1.74 5.43 30.68 0.17 -1.57 16 25 C -0.17 -5.78 7.68 31.12 0.24 -5.54 16 26 H 0.25 15.29 8.31 -92.70 -0.77 14.52 16 27 H 0.37 20.89 7.90 -92.70 -0.73 20.16 16 28 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.13 2.50 8.12 -2.39 -0.02 2.49 16 30 H 0.42 5.76 8.73 -92.70 -0.81 4.95 16 31 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.31 7.96 -2.39 -0.02 1.29 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.85 6.05 -2.38 -0.01 1.84 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.11 2.79 8.14 -2.38 -0.02 2.78 16 43 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -75.76 345.41 0.35 -75.40 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.54 Total: 33.40 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 4.28 Total: -7.37 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -3.77 Total: -118.26 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.65 Total: -31.94 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -75.76 0.35 -75.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020034620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.799 kcal (2) G-P(sol) polarization free energy of solvation -75.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds