Wall clock time and date at job start Tue Mar 31 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99521 * 2 1 4 4 H 1.48504 * 109.46653 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47370 * 299.99617 * 3 2 1 6 6 H 1.48497 * 109.47203 * 60.00428 * 3 2 1 7 7 C 1.38809 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99613 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00056 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.85280 * 336.20058 * 10 9 7 12 12 C 1.54058 * 113.61513 * 107.51257 * 10 9 7 13 13 C 1.53786 * 86.98547 * 139.97852 * 12 10 9 14 14 H 1.08998 * 113.61076 * 219.98282 * 13 12 10 15 15 N 1.46501 * 113.61390 * 89.15790 * 13 12 10 16 16 C 1.34776 * 119.99652 * 105.86632 * 15 13 12 17 17 O 1.21282 * 120.00220 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99791 * 179.97438 * 16 15 13 19 19 C 1.52998 * 109.46660 * 179.97438 * 18 16 15 20 20 H 1.08999 * 109.49319 * 54.97336 * 19 18 16 21 21 C 1.53098 * 109.47586 * 175.00163 * 19 18 16 22 22 C 1.53177 * 109.21356 * 177.55854 * 21 19 18 23 23 C 1.53180 * 109.03525 * 303.11207 * 22 21 19 24 24 C 1.53097 * 109.21119 * 56.88485 * 23 22 21 25 25 O 1.42898 * 109.41405 * 302.42599 * 24 23 22 26 26 C 1.53785 * 87.17269 * 334.56968 * 13 12 10 27 27 H 0.96998 * 120.00085 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99790 * 0.02562 * 9 7 2 29 29 H 1.08999 * 113.61574 * 25.47394 * 12 10 9 30 30 H 1.09000 * 113.69021 * 254.49421 * 12 10 9 31 31 H 0.96999 * 120.00079 * 285.86359 * 15 13 12 32 32 H 1.09003 * 109.46736 * 60.00274 * 18 16 15 33 33 H 1.08998 * 109.46973 * 300.00115 * 18 16 15 34 34 H 1.09002 * 109.52244 * 297.49793 * 21 19 18 35 35 H 1.09004 * 109.52508 * 57.62322 * 21 19 18 36 36 H 1.09005 * 109.54330 * 62.92184 * 22 21 19 37 37 H 1.09005 * 109.54560 * 183.18386 * 22 21 19 38 38 H 1.09002 * 109.46996 * 296.98297 * 23 22 21 39 39 H 1.09005 * 109.58122 * 176.85328 * 23 22 21 40 40 H 1.09007 * 109.47760 * 182.43925 * 24 23 22 41 41 H 1.08997 * 109.48022 * 62.41203 * 24 23 22 42 42 H 1.09001 * 113.61655 * 140.02263 * 26 13 12 43 43 H 1.09001 * 113.61422 * 270.84171 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 3.0658 -3.5637 -0.4059 12 6 1.9991 -4.4035 1.3456 13 6 1.8482 -5.6976 0.5285 14 1 1.1339 -6.4021 0.9545 15 7 3.1259 -6.3236 0.1795 16 6 3.5251 -7.4415 0.8178 17 8 2.8268 -7.9289 1.6814 18 6 4.8392 -8.0858 0.4585 19 6 5.0513 -9.3289 1.3248 20 1 4.1963 -9.9965 1.2186 21 6 6.3233 -10.0530 0.8758 22 6 6.5631 -11.2618 1.7856 23 6 6.6466 -10.7845 3.2388 24 6 5.3621 -10.0321 3.5965 25 8 5.1846 -8.9392 2.6932 26 6 1.2605 -4.8288 -0.5961 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 1.1203 -4.1590 1.9423 30 1 2.9267 -4.3528 1.9158 31 1 3.6845 -5.9336 -0.5109 32 1 5.6503 -7.3788 0.6333 33 1 4.8276 -8.3728 -0.5930 34 1 6.2064 -10.3899 -0.1542 35 1 7.1725 -9.3729 0.9424 36 1 5.7380 -11.9664 1.6809 37 1 7.4976 -11.7486 1.5065 38 1 7.5024 -10.1195 3.3542 39 1 6.7613 -11.6439 3.8995 40 1 5.4348 -9.6531 4.6160 41 1 4.5111 -10.7089 3.5200 42 1 1.5921 -5.1211 -1.5925 43 1 0.1799 -4.7014 -0.5301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020062857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:38 Heat of formation + Delta-G solvation = -66.350370 kcal Electronic energy + Delta-G solvation = -22082.286024 eV Core-core repulsion = 18741.741646 eV Total energy + Delta-G solvation = -3340.544378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18400 -39.25028 -37.74260 -33.98321 -33.80707 -33.10741 -32.37361 -29.92078 -28.43549 -25.08171 -24.90308 -24.34369 -23.06990 -21.99523 -20.52430 -20.41973 -18.88705 -17.21046 -16.89283 -16.67496 -16.21141 -15.70541 -14.99636 -14.82518 -14.78601 -14.57231 -14.18840 -13.84348 -13.56660 -13.12683 -12.87482 -12.64326 -12.59751 -12.32540 -11.87696 -11.80784 -11.58927 -11.48658 -11.35167 -11.03159 -10.90420 -10.75769 -10.53654 -10.27175 -10.17685 -9.89151 -9.68119 -9.54259 -9.49921 -8.89198 -8.68793 -6.96565 -5.79072 -3.07887 2.80562 3.28388 3.42268 3.47906 3.50185 3.62299 4.41926 4.49130 4.54816 4.58508 4.65708 4.84898 4.96195 5.02187 5.11892 5.18588 5.23439 5.29162 5.40733 5.42604 5.47869 5.50747 5.53853 5.60378 5.63594 5.74234 5.82282 5.90076 5.96971 5.99961 6.20025 6.28151 6.36668 6.58418 6.68778 6.75447 7.13240 7.14561 7.68721 7.70885 8.39403 8.42676 9.50661 10.08488 10.42835 11.43380 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034287 B = 0.002744 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.451277 B =10202.005070 C =10455.357974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.167 3.833 11 H 0.073 0.927 12 C -0.176 4.176 13 C 0.117 3.883 14 H 0.093 0.907 15 N -0.711 5.711 16 C 0.515 3.485 17 O -0.533 6.533 18 C -0.137 4.137 19 C 0.107 3.893 20 H 0.065 0.935 21 C -0.152 4.152 22 C -0.122 4.122 23 C -0.158 4.158 24 C 0.063 3.937 25 O -0.365 6.365 26 C -0.159 4.159 27 H 0.255 0.745 28 H 0.386 0.614 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.399 0.601 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.855 -23.073 0.548 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.055 3.945 11 H 0.091 0.909 12 C -0.218 4.218 13 C 0.011 3.989 14 H 0.111 0.889 15 N -0.362 5.362 16 C 0.300 3.700 17 O -0.409 6.409 18 C -0.177 4.177 19 C 0.049 3.951 20 H 0.083 0.917 21 C -0.190 4.190 22 C -0.159 4.159 23 C -0.196 4.196 24 C -0.014 4.014 25 O -0.284 6.284 26 C -0.199 4.199 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.233 0.767 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.451 -23.047 1.218 26.223 hybrid contribution 0.465 0.890 -0.354 1.065 sum 12.916 -22.157 0.865 25.661 Atomic orbital electron populations 1.69671 1.05137 1.25643 1.57558 1.24775 0.95536 0.97811 1.02847 0.86116 0.78792 0.84076 0.77193 1.20530 1.21856 1.21828 1.19340 0.91085 0.84227 1.42782 0.91070 1.42414 1.05784 0.99895 1.86962 1.21671 0.95003 0.85112 0.92734 0.90873 1.24334 1.01937 0.95428 1.00147 1.21776 0.85104 0.94004 0.97966 0.88897 1.45732 1.22303 1.27423 1.40714 1.20436 0.87495 0.80477 0.81543 1.90699 1.55705 1.63400 1.31079 1.21749 0.96832 0.98266 1.00816 1.21736 0.96308 0.94562 0.82509 0.91717 1.22247 0.98985 0.97927 0.99825 1.21569 1.02054 0.97428 0.94863 1.22226 0.99611 1.00753 0.96975 1.22505 0.95677 0.89418 0.93773 1.88005 1.93248 1.31465 1.15665 1.23847 1.01531 0.97365 0.97146 0.93493 0.78032 0.89735 0.92422 0.76700 0.88022 0.87635 0.90796 0.90876 0.91814 0.91502 0.91115 0.91061 0.89034 0.93269 0.91835 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.71 -17.79 5.40 -52.50 -0.28 -18.07 16 10 C 0.17 3.25 4.37 -66.97 -0.29 2.95 16 11 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 12 C -0.18 -3.22 7.70 -25.77 -0.20 -3.42 16 13 C 0.12 1.83 4.30 -67.11 -0.29 1.54 16 14 H 0.09 1.54 7.50 -51.93 -0.39 1.15 16 15 N -0.71 -9.30 5.26 -53.01 -0.28 -9.58 16 16 C 0.51 7.08 7.71 -10.98 -0.08 7.00 16 17 O -0.53 -9.53 15.04 -8.78 -0.13 -9.67 16 18 C -0.14 -1.30 5.41 -27.88 -0.15 -1.45 16 19 C 0.11 1.10 2.19 -26.68 -0.06 1.04 16 20 H 0.06 0.73 7.95 -51.93 -0.41 0.31 16 21 C -0.15 -1.12 5.42 -26.59 -0.14 -1.27 16 22 C -0.12 -0.83 6.03 -26.55 -0.16 -0.99 16 23 C -0.16 -1.17 6.13 -26.59 -0.16 -1.33 16 24 C 0.06 0.62 6.84 37.21 0.25 0.87 16 25 O -0.37 -4.67 9.64 -49.57 -0.48 -5.15 16 26 C -0.16 -2.55 7.57 -25.91 -0.20 -2.75 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.39 10.22 7.93 -40.82 -0.32 9.89 16 29 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.40 4.21 8.70 -40.82 -0.36 3.86 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.49 8.12 -51.93 -0.42 1.07 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -33.49 348.72 -9.31 -42.80 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.37 Total: 9.70 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.73 Total: -5.18 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.16 Total: -55.08 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.61 Total: -14.81 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.49 -9.31 -42.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020062857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.549 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds