Wall clock time and date at job start Tue Mar 31 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99521 * 2 1 4 4 H 1.48504 * 109.46653 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47370 * 299.99617 * 3 2 1 6 6 H 1.48497 * 109.47203 * 60.00428 * 3 2 1 7 7 C 1.38809 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99613 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00056 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.85280 * 336.20058 * 10 9 7 12 12 C 1.54058 * 113.61513 * 107.51257 * 10 9 7 13 13 C 1.53786 * 86.98547 * 139.97852 * 12 10 9 14 14 H 1.08998 * 113.61076 * 219.98282 * 13 12 10 15 15 N 1.46501 * 113.61390 * 89.15790 * 13 12 10 16 16 C 1.34776 * 119.99652 * 105.86632 * 15 13 12 17 17 O 1.21282 * 120.00220 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99791 * 179.97438 * 16 15 13 19 19 C 1.52998 * 109.46660 * 179.97438 * 18 16 15 20 20 H 1.08999 * 109.49319 * 54.97336 * 19 18 16 21 21 C 1.53098 * 109.47586 * 175.00163 * 19 18 16 22 22 C 1.53177 * 109.21356 * 177.55854 * 21 19 18 23 23 C 1.53180 * 109.03525 * 303.11207 * 22 21 19 24 24 C 1.53097 * 109.21119 * 56.88485 * 23 22 21 25 25 O 1.42898 * 109.41405 * 302.42599 * 24 23 22 26 26 C 1.53785 * 87.17269 * 334.56968 * 13 12 10 27 27 H 0.96998 * 120.00085 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99790 * 0.02562 * 9 7 2 29 29 H 1.08999 * 113.61574 * 25.47394 * 12 10 9 30 30 H 1.09000 * 113.69021 * 254.49421 * 12 10 9 31 31 H 0.96999 * 120.00079 * 285.86359 * 15 13 12 32 32 H 1.09003 * 109.46736 * 60.00274 * 18 16 15 33 33 H 1.08998 * 109.46973 * 300.00115 * 18 16 15 34 34 H 1.09002 * 109.52244 * 297.49793 * 21 19 18 35 35 H 1.09004 * 109.52508 * 57.62322 * 21 19 18 36 36 H 1.09005 * 109.54330 * 62.92184 * 22 21 19 37 37 H 1.09005 * 109.54560 * 183.18386 * 22 21 19 38 38 H 1.09002 * 109.46996 * 296.98297 * 23 22 21 39 39 H 1.09005 * 109.58122 * 176.85328 * 23 22 21 40 40 H 1.09007 * 109.47760 * 182.43925 * 24 23 22 41 41 H 1.08997 * 109.48022 * 62.41203 * 24 23 22 42 42 H 1.09001 * 113.61655 * 140.02263 * 26 13 12 43 43 H 1.09001 * 113.61422 * 270.84171 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 3.0658 -3.5637 -0.4059 12 6 1.9991 -4.4035 1.3456 13 6 1.8482 -5.6976 0.5285 14 1 1.1339 -6.4021 0.9545 15 7 3.1259 -6.3236 0.1795 16 6 3.5251 -7.4415 0.8178 17 8 2.8268 -7.9289 1.6814 18 6 4.8392 -8.0858 0.4585 19 6 5.0513 -9.3289 1.3248 20 1 4.1963 -9.9965 1.2186 21 6 6.3233 -10.0530 0.8758 22 6 6.5631 -11.2618 1.7856 23 6 6.6466 -10.7845 3.2388 24 6 5.3621 -10.0321 3.5965 25 8 5.1846 -8.9392 2.6932 26 6 1.2605 -4.8288 -0.5961 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 1.1203 -4.1590 1.9423 30 1 2.9267 -4.3528 1.9158 31 1 3.6845 -5.9336 -0.5109 32 1 5.6503 -7.3788 0.6333 33 1 4.8276 -8.3728 -0.5930 34 1 6.2064 -10.3899 -0.1542 35 1 7.1725 -9.3729 0.9424 36 1 5.7380 -11.9664 1.6809 37 1 7.4976 -11.7486 1.5065 38 1 7.5024 -10.1195 3.3542 39 1 6.7613 -11.6439 3.8995 40 1 5.4348 -9.6531 4.6160 41 1 4.5111 -10.7089 3.5200 42 1 1.5921 -5.1211 -1.5925 43 1 0.1799 -4.7014 -0.5301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020062857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:37 Heat of formation + Delta-G solvation = -89.114439 kcal Electronic energy + Delta-G solvation = -22083.273148 eV Core-core repulsion = 18741.741646 eV Total energy + Delta-G solvation = -3341.531502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25780 -40.22908 -39.03420 -35.74477 -34.49665 -34.18250 -33.58188 -31.78500 -29.24735 -26.57878 -26.40305 -25.36084 -24.17148 -23.34250 -21.50604 -21.13626 -20.34538 -19.15036 -18.04088 -17.47054 -17.14375 -16.91316 -16.51319 -15.99010 -15.67622 -15.60016 -15.41970 -15.25772 -14.93283 -14.27102 -13.91240 -13.68145 -13.51787 -13.46597 -13.32500 -13.15826 -12.89253 -12.79318 -12.55908 -12.14421 -12.10382 -11.93329 -11.83173 -11.73871 -11.62936 -11.24827 -11.18428 -10.84835 -10.79862 -10.28067 -9.95430 -8.98765 -7.94865 -5.23458 1.47987 1.48830 1.58687 1.73786 2.22691 2.56694 2.89449 3.36772 3.71136 3.74864 3.78201 3.86601 3.96885 3.97285 4.00718 4.16203 4.26682 4.33161 4.33345 4.37831 4.51281 4.63552 4.70509 4.77164 4.81740 4.91266 4.91886 4.95437 5.00639 5.11028 5.14158 5.16099 5.20912 5.22743 5.29846 5.42417 5.51568 5.75255 6.27398 6.39150 6.67054 7.33356 7.37610 8.09968 8.32422 9.28690 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034287 B = 0.002744 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.451277 B =10202.005070 C =10455.357974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.728 5.728 10 C 0.155 3.845 11 H 0.085 0.915 12 C -0.175 4.175 13 C 0.135 3.865 14 H 0.084 0.916 15 N -0.701 5.701 16 C 0.510 3.490 17 O -0.580 6.580 18 C -0.129 4.129 19 C 0.100 3.900 20 H 0.048 0.952 21 C -0.145 4.145 22 C -0.124 4.124 23 C -0.152 4.152 24 C 0.055 3.945 25 O -0.399 6.399 26 C -0.140 4.140 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.415 0.585 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.042 0.958 42 H 0.090 0.910 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.313 -24.287 -0.811 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.365 5.365 10 C 0.045 3.955 11 H 0.103 0.897 12 C -0.218 4.218 13 C 0.028 3.972 14 H 0.102 0.898 15 N -0.353 5.353 16 C 0.298 3.702 17 O -0.459 6.459 18 C -0.168 4.168 19 C 0.042 3.958 20 H 0.066 0.934 21 C -0.183 4.183 22 C -0.161 4.161 23 C -0.190 4.190 24 C -0.021 4.021 25 O -0.318 6.318 26 C -0.180 4.180 27 H 0.059 0.941 28 H 0.206 0.794 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.252 0.748 32 H 0.134 0.866 33 H 0.162 0.838 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.061 0.939 42 H 0.108 0.892 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.976 -24.303 -0.165 28.547 hybrid contribution -0.296 1.181 0.123 1.224 sum 14.681 -23.122 -0.041 27.389 Atomic orbital electron populations 1.69825 1.06669 1.25983 1.59677 1.25593 0.96389 1.01218 1.03857 0.85081 0.78360 0.79845 0.76532 1.18811 1.21974 1.22425 1.19749 0.91599 0.85313 1.40719 0.90324 1.42618 1.05453 1.01120 1.87314 1.22003 0.95695 0.83940 0.93850 0.89725 1.24207 1.00825 0.97202 0.99532 1.21435 0.86244 0.92708 0.96788 0.89807 1.45642 1.21490 1.27237 1.40970 1.21262 0.88454 0.80015 0.80474 1.90687 1.57415 1.64633 1.33149 1.21854 0.94195 0.97961 1.02804 1.21902 0.97277 0.94878 0.81735 0.93437 1.22206 0.97296 0.97794 1.00962 1.21616 1.02922 0.97353 0.94205 1.22176 0.97938 1.00886 0.97973 1.22638 0.96856 0.89080 0.93543 1.87950 1.93555 1.33142 1.17180 1.23643 1.00803 0.95060 0.98475 0.94063 0.79432 0.91607 0.93024 0.74822 0.86589 0.83763 0.88660 0.90483 0.91868 0.89762 0.91232 0.89591 0.89143 0.93922 0.89184 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.67 13.06 21.65 0.28 -59.38 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.24 -13.32 9.97 84.03 0.84 -12.48 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.73 -36.40 5.40 -320.00 -1.73 -38.13 16 10 C 0.16 5.87 4.37 45.62 0.20 6.07 16 11 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 12 C -0.18 -6.41 7.70 31.22 0.24 -6.17 16 13 C 0.14 4.07 4.30 45.52 0.20 4.27 16 14 H 0.08 2.76 7.50 -2.39 -0.02 2.74 16 15 N -0.70 -16.88 5.26 -440.02 -2.32 -19.20 16 16 C 0.51 13.28 7.71 87.66 0.68 13.96 16 17 O -0.58 -20.77 15.04 10.67 0.16 -20.60 16 18 C -0.13 -2.10 5.41 29.85 0.16 -1.94 16 19 C 0.10 1.90 2.19 30.63 0.07 1.97 16 20 H 0.05 1.04 7.95 -2.39 -0.02 1.02 16 21 C -0.15 -1.73 5.42 30.69 0.17 -1.56 16 22 C -0.12 -1.40 6.03 30.71 0.19 -1.21 16 23 C -0.15 -2.03 6.13 30.69 0.19 -1.84 16 24 C 0.06 1.08 6.84 72.01 0.49 1.57 16 25 O -0.40 -10.07 9.64 -135.27 -1.30 -11.37 16 26 C -0.14 -4.27 7.57 31.12 0.24 -4.04 16 27 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 28 H 0.37 20.18 7.93 -92.71 -0.73 19.44 16 29 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.41 7.41 8.70 -92.71 -0.81 6.61 16 32 H 0.12 1.62 8.14 -2.39 -0.02 1.61 16 33 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.88 8.14 -2.38 -0.02 0.87 16 36 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.87 8.14 -2.38 -0.02 0.86 16 40 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.08 2.73 8.12 -2.39 -0.02 2.71 16 Total: -1.00 -73.65 348.72 0.69 -72.96 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.54 Total: 33.12 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 4.11 Total: -5.45 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -3.76 Total: -116.70 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.14 Total: -31.98 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.65 0.69 -72.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020062857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.152 kcal (2) G-P(sol) polarization free energy of solvation -73.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds