Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99821 * 2 1 4 4 H 1.48496 * 109.47287 * 270.00048 * 3 2 1 5 5 H 1.48496 * 109.47271 * 30.00194 * 3 2 1 6 6 H 1.48502 * 109.47178 * 150.00266 * 3 2 1 7 7 C 1.38815 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99319 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00368 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00365 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.90903 * 23.74559 * 10 9 7 12 12 C 1.53775 * 113.61730 * 154.99999 * 10 9 7 13 13 C 1.53783 * 87.08432 * 89.11887 * 12 10 9 14 14 H 1.09003 * 113.61191 * 270.80572 * 13 12 10 15 15 N 1.46494 * 113.61956 * 139.98255 * 13 12 10 16 16 C 1.34772 * 120.00303 * 155.00028 * 15 13 12 17 17 O 1.21284 * 119.99887 * 0.02562 * 16 15 13 18 18 C 1.50698 * 120.00107 * 179.97438 * 16 15 13 19 19 C 1.53004 * 109.47060 * 179.97438 * 18 16 15 20 20 H 1.08994 * 109.48415 * 305.02546 * 19 18 16 21 21 C 1.53094 * 109.47753 * 185.00272 * 19 18 16 22 22 C 1.53183 * 109.15859 * 182.41073 * 21 19 18 23 23 C 1.53176 * 109.03838 * 56.98139 * 22 21 19 24 24 C 1.53093 * 109.16348 * 303.01796 * 23 22 21 25 25 O 1.42902 * 109.47962 * 65.04977 * 19 18 16 26 26 C 1.53781 * 113.61305 * 252.50117 * 10 9 7 27 27 H 0.97000 * 120.00299 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99774 * 0.02562 * 9 7 2 29 29 H 1.08996 * 113.61941 * 334.56719 * 12 10 9 30 30 H 1.08999 * 113.69177 * 203.67252 * 12 10 9 31 31 H 0.97001 * 119.99688 * 334.99982 * 15 13 12 32 32 H 1.09000 * 109.46791 * 60.00477 * 18 16 15 33 33 H 1.08997 * 109.47676 * 300.00385 * 18 16 15 34 34 H 1.08997 * 109.52488 * 62.51160 * 21 19 18 35 35 H 1.08995 * 109.52127 * 302.31145 * 21 19 18 36 36 H 1.09002 * 109.54436 * 297.11028 * 22 21 19 37 37 H 1.09003 * 109.54353 * 176.84876 * 22 21 19 38 38 H 1.09004 * 109.52469 * 183.11228 * 23 22 21 39 39 H 1.08998 * 109.57356 * 62.95334 * 23 22 21 40 40 H 1.09002 * 109.48198 * 177.59219 * 24 23 22 41 41 H 1.08999 * 109.48029 * 297.61833 * 24 23 22 42 42 H 1.09003 * 113.61369 * 156.33380 * 26 10 9 43 43 H 1.08993 * 113.61827 * 25.42546 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0022 11 1 3.5284 -3.2975 -0.4068 12 6 5.5259 -2.3653 -0.5981 13 6 6.0131 -2.0240 0.8200 14 1 5.9891 -0.9577 1.0451 15 7 7.2909 -2.6503 1.1682 16 6 8.0816 -2.0920 2.1059 17 8 7.7352 -1.0713 2.6619 18 6 9.3958 -2.7366 2.4645 19 6 10.0918 -1.9081 3.5462 20 1 10.1915 -0.8771 3.2067 21 6 11.4803 -2.4914 3.8215 22 6 12.1464 -1.6938 4.9470 23 6 11.2453 -1.7287 6.1851 24 6 9.8659 -1.1749 5.8185 25 8 9.3157 -1.9419 4.7456 26 6 4.7877 -2.7932 1.3412 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3620 -0.0007 29 1 5.6405 -1.5463 -1.3081 30 1 5.9132 -3.3111 -0.9769 31 1 7.5678 -3.4668 0.7238 32 1 10.0303 -2.7845 1.5795 33 1 9.2161 -3.7447 2.8378 34 1 12.0884 -2.4257 2.9194 35 1 11.3840 -3.5346 4.1221 36 1 12.2879 -0.6612 4.6279 37 1 13.1124 -2.1384 5.1865 38 1 11.6853 -1.1177 6.9733 39 1 11.1441 -2.7562 6.5344 40 1 9.2072 -1.2369 6.6848 41 1 9.9625 -0.1342 5.5090 42 1 4.9720 -3.8567 1.4930 43 1 4.3064 -2.3196 2.1967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020062858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = -61.751753 kcal Electronic energy + Delta-G solvation = -22271.509658 eV Core-core repulsion = 18931.164691 eV Total energy + Delta-G solvation = -3340.344967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17475 -39.26403 -37.90694 -34.07838 -33.81595 -33.11096 -32.46258 -30.33258 -28.54169 -25.18357 -24.98113 -24.22902 -23.00189 -22.12905 -20.51213 -20.31389 -18.90508 -17.63414 -16.85187 -16.68362 -16.37993 -15.90731 -14.92387 -14.86808 -14.78170 -14.59060 -14.25594 -14.01378 -13.21071 -13.04090 -12.91336 -12.75608 -12.56393 -12.41763 -12.11612 -12.00631 -11.89268 -11.51160 -11.36548 -11.04660 -10.92940 -10.80519 -10.54384 -10.36159 -10.22754 -9.87306 -9.65240 -9.58002 -9.45518 -8.92098 -8.69562 -7.28730 -5.77500 -3.13933 2.80275 3.31024 3.40406 3.45536 3.48168 3.61706 4.40497 4.47924 4.53766 4.60104 4.64969 4.82888 4.93141 4.94924 5.06177 5.11679 5.18429 5.21920 5.25884 5.38802 5.41490 5.44931 5.50261 5.59213 5.61895 5.71900 5.74565 5.80181 5.81820 5.98693 6.03545 6.13864 6.30570 6.55263 6.62531 6.74278 6.95025 7.14023 7.68507 7.99352 8.41818 8.42486 9.19357 9.91901 10.10443 11.40418 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.003242 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.481950 B = 8635.427478 C = 9179.366869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.248 4.248 8 H 0.093 0.907 9 N -0.730 5.730 10 C 0.176 3.824 11 H 0.077 0.923 12 C -0.165 4.165 13 C 0.123 3.877 14 H 0.108 0.892 15 N -0.722 5.722 16 C 0.510 3.490 17 O -0.528 6.528 18 C -0.136 4.136 19 C 0.106 3.894 20 H 0.065 0.935 21 C -0.151 4.151 22 C -0.122 4.122 23 C -0.157 4.157 24 C 0.063 3.937 25 O -0.365 6.365 26 C -0.182 4.182 27 H 0.260 0.740 28 H 0.363 0.637 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.396 0.604 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.987 -7.827 6.559 28.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.064 3.936 11 H 0.095 0.905 12 C -0.205 4.205 13 C 0.019 3.981 14 H 0.126 0.874 15 N -0.372 5.372 16 C 0.295 3.705 17 O -0.404 6.404 18 C -0.176 4.176 19 C 0.048 3.952 20 H 0.083 0.917 21 C -0.189 4.189 22 C -0.160 4.160 23 C -0.195 4.195 24 C -0.014 4.014 25 O -0.284 6.284 26 C -0.224 4.224 27 H 0.070 0.930 28 H 0.196 0.804 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.229 0.771 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 26.272 -7.210 6.969 28.120 hybrid contribution 1.024 0.922 -0.110 1.382 sum 27.295 -6.288 6.859 28.838 Atomic orbital electron populations 1.69695 1.05101 1.25936 1.57158 1.24668 0.95250 0.97246 1.01728 0.86591 0.79476 0.84978 0.77832 1.20981 1.21575 1.20101 1.19094 0.80319 0.94866 1.43457 0.88962 1.42544 1.04065 1.01584 1.88797 1.20860 0.89742 0.90171 0.92822 0.90542 1.23906 0.99101 1.01701 0.95803 1.22607 0.80990 0.98703 0.95819 0.87374 1.46106 1.21247 1.28856 1.41040 1.20497 0.85733 0.84938 0.79295 1.90733 1.74078 1.24324 1.51244 1.21748 0.95271 1.01322 0.99247 1.21745 0.89317 0.98813 0.85372 0.91713 1.22240 0.96549 1.00725 0.99380 1.21573 0.98600 1.00588 0.95194 1.22221 0.96722 1.02454 0.98115 1.22514 0.94017 0.94561 0.90338 1.88002 1.48537 1.71074 1.20746 1.24270 0.96888 0.99261 1.02005 0.92973 0.80390 0.91077 0.89908 0.77069 0.87783 0.88188 0.90841 0.90934 0.91776 0.91516 0.91037 0.91133 0.88986 0.93218 0.90871 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 22.64 27.74 -169.99 -4.71 17.92 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.27 -6.82 6.52 56.52 0.37 -6.45 16 7 C -0.25 -7.05 10.45 -15.06 -0.16 -7.21 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.73 -17.50 5.11 -52.64 -0.27 -17.76 16 10 C 0.18 3.35 4.56 -67.12 -0.31 3.04 16 11 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 12 C -0.17 -2.46 7.58 -25.92 -0.20 -2.65 16 13 C 0.12 1.97 4.12 -67.12 -0.28 1.69 16 14 H 0.11 2.08 7.46 -51.93 -0.39 1.70 16 15 N -0.72 -9.08 5.35 -53.02 -0.28 -9.36 16 16 C 0.51 7.14 7.71 -10.99 -0.08 7.05 16 17 O -0.53 -10.02 15.02 -8.84 -0.13 -10.16 16 18 C -0.14 -1.27 5.41 -27.88 -0.15 -1.42 16 19 C 0.11 1.11 2.19 -26.68 -0.06 1.05 16 20 H 0.06 0.76 7.96 -51.93 -0.41 0.35 16 21 C -0.15 -1.11 5.42 -26.59 -0.14 -1.26 16 22 C -0.12 -0.86 6.03 -26.55 -0.16 -1.02 16 23 C -0.16 -1.20 6.14 -26.59 -0.16 -1.36 16 24 C 0.06 0.64 6.84 37.21 0.25 0.90 16 25 O -0.36 -4.78 9.64 -49.63 -0.48 -5.26 16 26 C -0.18 -3.16 7.68 -25.92 -0.20 -3.36 16 27 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 28 H 0.36 8.68 5.76 -40.82 -0.24 8.45 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 31 H 0.40 3.52 8.73 -40.82 -0.36 3.17 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -35.09 345.53 -8.96 -44.04 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.32 Total: 8.56 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.74 Total: -4.43 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.22 Total: -55.89 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.61 Total: -15.42 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.09 -8.96 -44.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020062858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.708 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds