Wall clock time and date at job start Tue Mar 31 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99821 * 2 1 4 4 H 1.48496 * 109.47287 * 270.00048 * 3 2 1 5 5 H 1.48496 * 109.47271 * 30.00194 * 3 2 1 6 6 H 1.48502 * 109.47178 * 150.00266 * 3 2 1 7 7 C 1.38815 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99319 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00368 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00365 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.90903 * 23.74559 * 10 9 7 12 12 C 1.53775 * 113.61730 * 154.99999 * 10 9 7 13 13 C 1.53783 * 87.08432 * 89.11887 * 12 10 9 14 14 H 1.09003 * 113.61191 * 270.80572 * 13 12 10 15 15 N 1.46494 * 113.61956 * 139.98255 * 13 12 10 16 16 C 1.34772 * 120.00303 * 155.00028 * 15 13 12 17 17 O 1.21284 * 119.99887 * 0.02562 * 16 15 13 18 18 C 1.50698 * 120.00107 * 179.97438 * 16 15 13 19 19 C 1.53004 * 109.47060 * 179.97438 * 18 16 15 20 20 H 1.08994 * 109.48415 * 305.02546 * 19 18 16 21 21 C 1.53094 * 109.47753 * 185.00272 * 19 18 16 22 22 C 1.53183 * 109.15859 * 182.41073 * 21 19 18 23 23 C 1.53176 * 109.03838 * 56.98139 * 22 21 19 24 24 C 1.53093 * 109.16348 * 303.01796 * 23 22 21 25 25 O 1.42902 * 109.47962 * 65.04977 * 19 18 16 26 26 C 1.53781 * 113.61305 * 252.50117 * 10 9 7 27 27 H 0.97000 * 120.00299 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99774 * 0.02562 * 9 7 2 29 29 H 1.08996 * 113.61941 * 334.56719 * 12 10 9 30 30 H 1.08999 * 113.69177 * 203.67252 * 12 10 9 31 31 H 0.97001 * 119.99688 * 334.99982 * 15 13 12 32 32 H 1.09000 * 109.46791 * 60.00477 * 18 16 15 33 33 H 1.08997 * 109.47676 * 300.00385 * 18 16 15 34 34 H 1.08997 * 109.52488 * 62.51160 * 21 19 18 35 35 H 1.08995 * 109.52127 * 302.31145 * 21 19 18 36 36 H 1.09002 * 109.54436 * 297.11028 * 22 21 19 37 37 H 1.09003 * 109.54353 * 176.84876 * 22 21 19 38 38 H 1.09004 * 109.52469 * 183.11228 * 23 22 21 39 39 H 1.08998 * 109.57356 * 62.95334 * 23 22 21 40 40 H 1.09002 * 109.48198 * 177.59219 * 24 23 22 41 41 H 1.08999 * 109.48029 * 297.61833 * 24 23 22 42 42 H 1.09003 * 113.61369 * 156.33380 * 26 10 9 43 43 H 1.08993 * 113.61827 * 25.42546 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0022 11 1 3.5284 -3.2975 -0.4068 12 6 5.5259 -2.3653 -0.5981 13 6 6.0131 -2.0240 0.8200 14 1 5.9891 -0.9577 1.0451 15 7 7.2909 -2.6503 1.1682 16 6 8.0816 -2.0920 2.1059 17 8 7.7352 -1.0713 2.6619 18 6 9.3958 -2.7366 2.4645 19 6 10.0918 -1.9081 3.5462 20 1 10.1915 -0.8771 3.2067 21 6 11.4803 -2.4914 3.8215 22 6 12.1464 -1.6938 4.9470 23 6 11.2453 -1.7287 6.1851 24 6 9.8659 -1.1749 5.8185 25 8 9.3157 -1.9419 4.7456 26 6 4.7877 -2.7932 1.3412 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3620 -0.0007 29 1 5.6405 -1.5463 -1.3081 30 1 5.9132 -3.3111 -0.9769 31 1 7.5678 -3.4668 0.7238 32 1 10.0303 -2.7845 1.5795 33 1 9.2161 -3.7447 2.8378 34 1 12.0884 -2.4257 2.9194 35 1 11.3840 -3.5346 4.1221 36 1 12.2879 -0.6612 4.6279 37 1 13.1124 -2.1384 5.1865 38 1 11.6853 -1.1177 6.9733 39 1 11.1441 -2.7562 6.5344 40 1 9.2072 -1.2369 6.6848 41 1 9.9625 -0.1342 5.5090 42 1 4.9720 -3.8567 1.4930 43 1 4.3064 -2.3196 2.1967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020062858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:40 Heat of formation + Delta-G solvation = -87.138468 kcal Electronic energy + Delta-G solvation = -22272.610509 eV Core-core repulsion = 18931.164691 eV Total energy + Delta-G solvation = -3341.445817 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23411 -40.26929 -39.17443 -35.78910 -34.52108 -34.31072 -33.68522 -32.27885 -29.34132 -26.53537 -26.31444 -25.32867 -24.37191 -23.30609 -21.40009 -21.15759 -20.48088 -19.60653 -17.89948 -17.55700 -17.48725 -16.83591 -16.50487 -16.18323 -15.79945 -15.62756 -15.36201 -15.04527 -14.75686 -14.69479 -13.99970 -13.88362 -13.71773 -13.54307 -13.37656 -13.19199 -12.94125 -12.82596 -12.50485 -12.24165 -12.16649 -11.95580 -11.86536 -11.78205 -11.64990 -11.35059 -11.26132 -10.96764 -10.72360 -10.29559 -9.92559 -9.33427 -8.06493 -5.39566 1.34029 1.36967 1.43152 1.74499 2.29441 2.43825 2.87304 3.23422 3.47888 3.67283 3.76106 3.77554 3.84876 3.94978 3.98260 4.12995 4.22767 4.24370 4.26244 4.38659 4.48979 4.62418 4.69862 4.77485 4.81668 4.83960 4.90422 4.98967 4.99567 5.08910 5.11614 5.14066 5.18575 5.22767 5.29939 5.40388 5.66701 5.77304 6.19382 6.36671 6.70423 7.03617 7.41997 7.80997 7.97174 9.14842 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.003242 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.481950 B = 8635.427478 C = 9179.366869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.061 4.061 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.231 4.231 8 H 0.064 0.936 9 N -0.738 5.738 10 C 0.151 3.849 11 H 0.077 0.923 12 C -0.135 4.135 13 C 0.128 3.872 14 H 0.071 0.929 15 N -0.705 5.705 16 C 0.502 3.498 17 O -0.587 6.587 18 C -0.126 4.126 19 C 0.097 3.903 20 H 0.041 0.959 21 C -0.143 4.143 22 C -0.125 4.125 23 C -0.151 4.151 24 C 0.054 3.946 25 O -0.398 6.398 26 C -0.174 4.174 27 H 0.259 0.741 28 H 0.363 0.637 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.419 0.581 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.105 0.895 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.786 -9.465 5.780 32.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.362 4.362 8 H 0.082 0.918 9 N -0.379 5.379 10 C 0.041 3.959 11 H 0.095 0.905 12 C -0.174 4.174 13 C 0.022 3.978 14 H 0.089 0.911 15 N -0.357 5.357 16 C 0.290 3.710 17 O -0.467 6.467 18 C -0.165 4.165 19 C 0.039 3.961 20 H 0.059 0.941 21 C -0.180 4.180 22 C -0.162 4.162 23 C -0.188 4.188 24 C -0.022 4.022 25 O -0.317 6.317 26 C -0.216 4.216 27 H 0.067 0.933 28 H 0.196 0.804 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.257 0.743 32 H 0.163 0.837 33 H 0.139 0.861 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.056 0.944 42 H 0.123 0.877 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 30.150 -8.925 6.165 32.042 hybrid contribution -0.172 1.318 0.175 1.341 sum 29.978 -7.607 6.340 31.571 Atomic orbital electron populations 1.69857 1.06884 1.26651 1.59697 1.25430 0.96081 1.00936 1.02802 0.85507 0.78247 0.80319 0.78299 1.19695 1.22128 1.19077 1.19101 0.82393 0.93681 1.41013 0.91757 1.42569 1.02584 1.03624 1.89150 1.21218 0.91707 0.88146 0.94783 0.90466 1.23735 0.94919 1.03990 0.94754 1.22192 0.82225 0.96788 0.96576 0.91102 1.45879 1.19680 1.29362 1.40772 1.21414 0.87061 0.84206 0.78330 1.90719 1.75562 1.27107 1.53287 1.21842 0.92866 1.01262 1.00506 1.21938 0.91109 0.98223 0.84846 0.94059 1.22193 0.94591 1.00754 1.00487 1.21626 0.99208 1.00639 0.94727 1.22164 0.95124 1.02546 0.98991 1.22635 0.95733 0.94027 0.89820 1.87946 1.50342 1.71435 1.22004 1.24183 0.97072 1.01032 0.99312 0.93257 0.80387 0.91170 0.85253 0.74293 0.83699 0.86099 0.88609 0.90102 0.92174 0.89567 0.89708 0.90909 0.89216 0.94363 0.87657 0.94830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.11 13.97 21.65 0.30 -63.80 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 3 Si 0.95 47.79 27.74 68.60 1.90 49.69 16 4 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 6 H -0.27 -12.76 6.52 99.48 0.65 -12.12 16 7 C -0.23 -13.45 10.45 84.04 0.88 -12.57 16 8 H 0.06 4.03 8.06 -2.91 -0.02 4.01 16 9 N -0.74 -35.49 5.11 -320.47 -1.64 -37.13 16 10 C 0.15 5.58 4.56 45.52 0.21 5.79 16 11 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 12 C -0.13 -3.57 7.58 31.12 0.24 -3.34 16 13 C 0.13 3.89 4.12 45.52 0.19 4.08 16 14 H 0.07 2.75 7.46 -2.39 -0.02 2.73 16 15 N -0.70 -15.65 5.35 -440.04 -2.36 -18.01 16 16 C 0.50 13.22 7.71 87.66 0.68 13.89 16 17 O -0.59 -22.63 15.02 10.72 0.16 -22.47 16 18 C -0.13 -1.95 5.41 29.85 0.16 -1.78 16 19 C 0.10 1.88 2.19 30.63 0.07 1.95 16 20 H 0.04 0.97 7.96 -2.39 -0.02 0.95 16 21 C -0.14 -1.66 5.42 30.69 0.17 -1.49 16 22 C -0.12 -1.45 6.03 30.71 0.19 -1.26 16 23 C -0.15 -2.08 6.14 30.68 0.19 -1.89 16 24 C 0.05 1.13 6.84 72.01 0.49 1.62 16 25 O -0.40 -10.35 9.64 -135.22 -1.30 -11.65 16 26 C -0.17 -5.87 7.68 31.12 0.24 -5.63 16 27 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 28 H 0.36 17.29 5.76 -92.70 -0.53 16.76 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.13 2.29 8.12 -2.39 -0.02 2.27 16 31 H 0.42 5.42 8.73 -92.71 -0.81 4.61 16 32 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -81.38 345.53 0.82 -80.57 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: -0.40 Total: 26.67 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 4.15 Total: -3.87 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -3.69 Total: -118.94 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -1.14 Total: -34.12 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.90 Total: 49.69 kcal Total: -81.38 0.82 -80.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020062858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.571 kcal (2) G-P(sol) polarization free energy of solvation -81.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds