Wall clock time and date at job start Tue Mar 31 2020 05:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.85022 * 335.91798 * 10 9 7 12 12 C 1.53782 * 113.61718 * 107.22616 * 10 9 7 13 13 C 1.53774 * 87.08161 * 89.11276 * 12 10 9 14 14 H 1.09004 * 113.61904 * 270.88211 * 13 12 10 15 15 N 1.46504 * 113.69170 * 139.98977 * 13 12 10 16 16 C 1.34781 * 119.99595 * 107.46232 * 15 13 12 17 17 O 1.21278 * 120.00260 * 0.02562 * 16 15 13 18 18 C 1.50696 * 119.99856 * 180.02562 * 16 15 13 19 19 C 1.53008 * 109.47210 * 299.99944 * 18 16 15 20 20 C 1.52995 * 109.47463 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.47007 * 60.00150 * 20 19 18 22 22 O 1.42896 * 109.47507 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.47312 * 300.00081 * 21 20 19 24 24 C 1.53002 * 109.47189 * 180.02562 * 18 16 15 25 25 C 1.53781 * 113.61158 * 204.72465 * 10 9 7 26 26 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.08999 * 113.61704 * 203.66488 * 12 10 9 29 29 H 1.09006 * 113.61098 * 334.56706 * 12 10 9 30 30 H 0.96996 * 120.00273 * 287.47047 * 15 13 12 31 31 H 1.08994 * 109.47490 * 59.99772 * 18 16 15 32 32 H 1.08997 * 109.47144 * 300.00601 * 19 18 16 33 33 H 1.09009 * 109.46832 * 60.00217 * 19 18 16 34 34 H 1.09006 * 109.47339 * 300.00350 * 20 19 18 35 35 H 1.08997 * 109.47598 * 180.02562 * 20 19 18 36 36 H 1.09006 * 109.46908 * 59.99936 * 21 20 19 37 37 H 0.96705 * 113.99957 * 300.00954 * 22 21 20 38 38 H 1.09003 * 109.47367 * 300.00160 * 23 21 20 39 39 H 1.08995 * 109.47214 * 179.97438 * 23 21 20 40 40 H 1.09000 * 109.46891 * 299.99284 * 24 18 16 41 41 H 1.08994 * 109.47297 * 59.99903 * 24 18 16 42 42 H 1.08995 * 113.61890 * 25.43111 * 25 10 9 43 43 H 1.08997 * 113.61580 * 156.33630 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0656 -3.5659 -0.3983 12 6 1.9984 -4.3954 1.3548 13 6 0.7200 -5.0749 0.8365 14 1 -0.1908 -4.5186 1.0583 15 7 0.6214 -6.4927 1.1919 16 6 -0.2586 -6.8923 2.1314 17 8 -0.9690 -6.0782 2.6822 18 6 -0.3596 -8.3506 2.4975 19 6 -0.7472 -9.1616 1.2592 20 6 -0.8492 -10.6423 1.6306 21 6 -1.9147 -10.8242 2.7135 22 8 -2.0097 -12.2071 3.0609 23 6 -1.5272 -10.0133 3.9517 24 6 -1.4259 -8.5321 3.5796 25 6 1.2602 -4.8317 -0.5827 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 2.8272 -5.0859 1.5112 29 1 1.8283 -3.7368 2.2065 30 1 1.1894 -7.1439 0.7513 31 1 0.6026 -8.6985 2.8730 32 1 -1.7094 -8.8137 0.8836 33 1 0.0122 -9.0324 0.4879 34 1 0.1133 -10.9899 2.0060 35 1 -1.1249 -11.2201 0.7485 36 1 -2.8773 -10.4766 2.3381 37 1 -2.2521 -12.7824 2.3224 38 1 -0.5647 -10.3609 4.3271 39 1 -2.2865 -10.1426 4.7229 40 1 -1.1501 -7.9545 4.4619 41 1 -2.3880 -8.1844 3.2037 42 1 0.4941 -4.5255 -1.2950 43 1 1.8871 -5.6415 -0.9558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020109118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:58 Heat of formation + Delta-G solvation = -77.969522 kcal Electronic energy + Delta-G solvation = -22200.982827 eV Core-core repulsion = 18859.934605 eV Total energy + Delta-G solvation = -3341.048222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36842 -38.92848 -37.82361 -35.62682 -34.04635 -32.67572 -31.09513 -30.23566 -29.45737 -25.10868 -24.75930 -23.53180 -23.04875 -22.34087 -20.62266 -19.94848 -18.73967 -17.58559 -17.36961 -16.98843 -16.13521 -15.73238 -14.92653 -14.85843 -14.73975 -14.17585 -14.03843 -13.88123 -13.33668 -13.03338 -12.72826 -12.67181 -12.60303 -12.15644 -11.98584 -11.87221 -11.66194 -11.60982 -11.39989 -11.02577 -10.86200 -10.79201 -10.50737 -10.27229 -10.17444 -10.13942 -9.88486 -9.71018 -9.44331 -8.91013 -8.67545 -7.00787 -5.79114 -3.09311 2.75519 3.32645 3.43535 3.47739 3.49117 3.82756 4.28651 4.35457 4.56164 4.58671 4.77644 4.85372 4.92809 5.05441 5.06303 5.14531 5.16183 5.25933 5.38358 5.40760 5.48174 5.55952 5.63270 5.68667 5.77960 5.86449 5.87764 5.98882 6.00427 6.08554 6.12944 6.23241 6.37971 6.62987 6.73075 6.79502 7.04265 7.28469 7.67603 7.70380 8.39021 8.40109 9.49692 10.06064 10.40016 11.43031 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045834 B = 0.002785 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.756927 B =10051.812367 C =10306.110043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.184 4.184 13 C 0.124 3.876 14 H 0.113 0.887 15 N -0.717 5.717 16 C 0.512 3.488 17 O -0.537 6.537 18 C -0.109 4.109 19 C -0.108 4.108 20 C -0.149 4.149 21 C 0.102 3.898 22 O -0.570 6.570 23 C -0.112 4.112 24 C -0.097 4.097 25 C -0.164 4.164 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.395 0.605 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.376 0.624 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 -24.631 2.104 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.058 3.942 11 H 0.086 0.914 12 C -0.227 4.227 13 C 0.020 3.980 14 H 0.130 0.870 15 N -0.367 5.367 16 C 0.297 3.703 17 O -0.413 6.413 18 C -0.131 4.131 19 C -0.146 4.146 20 C -0.187 4.187 21 C 0.043 3.957 22 O -0.375 6.375 23 C -0.149 4.149 24 C -0.135 4.135 25 C -0.204 4.204 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.228 0.772 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.223 0.777 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.042 -23.590 3.073 23.812 hybrid contribution 0.324 0.355 -0.761 0.900 sum -0.718 -23.235 2.312 23.361 Atomic orbital electron populations 1.69660 1.05156 1.25989 1.56995 1.24789 0.95545 0.97853 1.02585 0.86231 0.78507 0.83339 0.77864 1.21188 1.21654 1.21180 1.19224 0.91066 0.83912 1.43514 0.90987 1.42195 1.05763 0.99402 1.87032 1.20908 0.95219 0.85440 0.92584 0.91425 1.24314 0.96279 0.99750 1.02332 1.22630 0.99701 0.79812 0.95809 0.86955 1.46153 1.40075 1.09841 1.40674 1.20590 0.79806 0.90404 0.79458 1.90730 1.43258 1.55036 1.52285 1.21408 1.01651 0.92473 0.97545 1.21472 1.02763 0.94050 0.96315 1.22255 1.00755 0.96628 0.99015 1.21886 0.97194 0.81535 0.95073 1.86521 1.93024 1.17973 1.40021 1.21518 1.02683 0.93975 0.96773 1.21320 0.98990 0.94775 0.98428 1.23889 1.00717 0.99939 0.95870 0.93303 0.77976 0.91341 0.91092 0.77152 0.88539 0.91049 0.90979 0.90851 0.91393 0.92563 0.77674 0.91150 0.90912 0.90342 0.90837 0.90917 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.25 -6.84 9.97 -15.06 -0.15 -6.99 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.72 5.31 -52.64 -0.28 -18.00 16 10 C 0.17 3.34 4.56 -67.12 -0.31 3.04 16 11 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 12 C -0.18 -3.25 7.68 -25.92 -0.20 -3.45 16 13 C 0.12 2.05 4.11 -67.12 -0.28 1.77 16 14 H 0.11 2.26 7.46 -51.93 -0.39 1.87 16 15 N -0.72 -9.17 5.25 -53.02 -0.28 -9.45 16 16 C 0.51 7.12 7.15 -10.99 -0.08 7.04 16 17 O -0.54 -10.10 15.58 5.56 0.09 -10.01 16 18 C -0.11 -1.05 2.53 -91.77 -0.23 -1.28 16 19 C -0.11 -0.82 5.10 -26.73 -0.14 -0.95 16 20 C -0.15 -0.95 5.55 -26.73 -0.15 -1.10 16 21 C 0.10 0.77 3.47 -26.73 -0.09 0.68 16 22 O -0.57 -4.52 13.32 -35.23 -0.47 -4.99 16 23 C -0.11 -0.96 5.57 -26.70 -0.15 -1.11 16 24 C -0.10 -0.98 4.49 -26.70 -0.12 -1.10 16 25 C -0.16 -2.57 7.58 -25.92 -0.20 -2.76 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.39 10.39 7.90 -40.82 -0.32 10.06 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.39 3.71 8.15 -40.82 -0.33 3.37 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.46 7.56 -51.92 -0.39 0.07 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.38 1.42 9.08 45.56 0.41 1.83 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.08 0.97 8.12 -51.93 -0.42 0.54 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -33.65 346.79 -8.67 -42.32 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -6.48 Total: 11.75 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -2.18 Total: -6.62 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.17 Total: -55.08 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.38 Total: -15.00 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.65 -8.67 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020109118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.645 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds