Wall clock time and date at job start Tue Mar 31 2020 05:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.85022 * 335.91798 * 10 9 7 12 12 C 1.53782 * 113.61718 * 107.22616 * 10 9 7 13 13 C 1.53774 * 87.08161 * 89.11276 * 12 10 9 14 14 H 1.09004 * 113.61904 * 270.88211 * 13 12 10 15 15 N 1.46504 * 113.69170 * 139.98977 * 13 12 10 16 16 C 1.34781 * 119.99595 * 107.46232 * 15 13 12 17 17 O 1.21278 * 120.00260 * 0.02562 * 16 15 13 18 18 C 1.50696 * 119.99856 * 180.02562 * 16 15 13 19 19 C 1.53008 * 109.47210 * 299.99944 * 18 16 15 20 20 C 1.52995 * 109.47463 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.47007 * 60.00150 * 20 19 18 22 22 O 1.42896 * 109.47507 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.47312 * 300.00081 * 21 20 19 24 24 C 1.53002 * 109.47189 * 180.02562 * 18 16 15 25 25 C 1.53781 * 113.61158 * 204.72465 * 10 9 7 26 26 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.08999 * 113.61704 * 203.66488 * 12 10 9 29 29 H 1.09006 * 113.61098 * 334.56706 * 12 10 9 30 30 H 0.96996 * 120.00273 * 287.47047 * 15 13 12 31 31 H 1.08994 * 109.47490 * 59.99772 * 18 16 15 32 32 H 1.08997 * 109.47144 * 300.00601 * 19 18 16 33 33 H 1.09009 * 109.46832 * 60.00217 * 19 18 16 34 34 H 1.09006 * 109.47339 * 300.00350 * 20 19 18 35 35 H 1.08997 * 109.47598 * 180.02562 * 20 19 18 36 36 H 1.09006 * 109.46908 * 59.99936 * 21 20 19 37 37 H 0.96705 * 113.99957 * 300.00954 * 22 21 20 38 38 H 1.09003 * 109.47367 * 300.00160 * 23 21 20 39 39 H 1.08995 * 109.47214 * 179.97438 * 23 21 20 40 40 H 1.09000 * 109.46891 * 299.99284 * 24 18 16 41 41 H 1.08994 * 109.47297 * 59.99903 * 24 18 16 42 42 H 1.08995 * 113.61890 * 25.43111 * 25 10 9 43 43 H 1.08997 * 113.61580 * 156.33630 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0656 -3.5659 -0.3983 12 6 1.9984 -4.3954 1.3548 13 6 0.7200 -5.0749 0.8365 14 1 -0.1908 -4.5186 1.0583 15 7 0.6214 -6.4927 1.1919 16 6 -0.2586 -6.8923 2.1314 17 8 -0.9690 -6.0782 2.6822 18 6 -0.3596 -8.3506 2.4975 19 6 -0.7472 -9.1616 1.2592 20 6 -0.8492 -10.6423 1.6306 21 6 -1.9147 -10.8242 2.7135 22 8 -2.0097 -12.2071 3.0609 23 6 -1.5272 -10.0133 3.9517 24 6 -1.4259 -8.5321 3.5796 25 6 1.2602 -4.8317 -0.5827 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 2.8272 -5.0859 1.5112 29 1 1.8283 -3.7368 2.2065 30 1 1.1894 -7.1439 0.7513 31 1 0.6026 -8.6985 2.8730 32 1 -1.7094 -8.8137 0.8836 33 1 0.0122 -9.0324 0.4879 34 1 0.1133 -10.9899 2.0060 35 1 -1.1249 -11.2201 0.7485 36 1 -2.8773 -10.4766 2.3381 37 1 -2.2521 -12.7824 2.3224 38 1 -0.5647 -10.3609 4.3271 39 1 -2.2865 -10.1426 4.7229 40 1 -1.1501 -7.9545 4.4619 41 1 -2.3880 -8.1844 3.2037 42 1 0.4941 -4.5255 -1.2950 43 1 1.8871 -5.6415 -0.9558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020109118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:57 Heat of formation + Delta-G solvation = -104.184193 kcal Electronic energy + Delta-G solvation = -22202.119580 eV Core-core repulsion = 18859.934605 eV Total energy + Delta-G solvation = -3342.184975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.43485 -39.99788 -38.94129 -36.34828 -35.74082 -34.26407 -31.94022 -31.60113 -30.62542 -26.52642 -26.36824 -25.02209 -23.71794 -23.51949 -21.56113 -20.82375 -20.15065 -19.35349 -18.20935 -17.99636 -17.42949 -16.70475 -16.57130 -15.99256 -15.67557 -15.48344 -15.20236 -15.01277 -14.66446 -14.40558 -13.98082 -13.61209 -13.43591 -13.30726 -13.24931 -13.18351 -12.77155 -12.70522 -12.59325 -12.32612 -12.22812 -12.07700 -11.82189 -11.75220 -11.70606 -11.32750 -11.12598 -10.89975 -10.74277 -10.59062 -9.95048 -9.04013 -7.96631 -5.26577 1.46342 1.50118 1.56105 1.64910 2.24697 2.54723 3.25514 3.35182 3.63182 3.64772 3.69782 3.81411 3.84846 3.90514 4.11598 4.21453 4.28926 4.30549 4.35383 4.37407 4.44811 4.50110 4.78953 4.80732 4.83184 4.94233 5.01374 5.02423 5.08321 5.15588 5.16971 5.18151 5.26136 5.30288 5.33135 5.43596 5.50360 5.70854 6.25815 6.64418 6.93135 7.30147 7.34516 8.06809 8.27814 9.26800 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045834 B = 0.002785 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.756927 B =10051.812367 C =10306.110043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.082 0.918 9 N -0.724 5.724 10 C 0.150 3.850 11 H 0.078 0.922 12 C -0.172 4.172 13 C 0.130 3.870 14 H 0.066 0.934 15 N -0.699 5.699 16 C 0.507 3.493 17 O -0.595 6.595 18 C -0.098 4.098 19 C -0.104 4.104 20 C -0.139 4.139 21 C 0.101 3.899 22 O -0.585 6.585 23 C -0.108 4.108 24 C -0.095 4.095 25 C -0.137 4.137 26 H 0.251 0.749 27 H 0.371 0.629 28 H 0.106 0.894 29 H 0.031 0.969 30 H 0.418 0.582 31 H 0.122 0.878 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.394 0.606 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -27.385 1.020 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.806 3.194 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.039 3.961 11 H 0.097 0.903 12 C -0.214 4.214 13 C 0.024 3.976 14 H 0.084 0.916 15 N -0.351 5.351 16 C 0.295 3.705 17 O -0.475 6.475 18 C -0.119 4.119 19 C -0.142 4.142 20 C -0.177 4.177 21 C 0.042 3.958 22 O -0.394 6.394 23 C -0.145 4.145 24 C -0.133 4.133 25 C -0.176 4.176 26 H 0.060 0.940 27 H 0.203 0.797 28 H 0.125 0.875 29 H 0.050 0.950 30 H 0.256 0.744 31 H 0.140 0.860 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.244 0.756 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.264 -26.438 1.957 26.541 hybrid contribution -0.361 1.108 -0.382 1.226 sum 0.903 -25.331 1.575 25.396 Atomic orbital electron populations 1.69839 1.06842 1.26216 1.59412 1.25662 0.96391 1.01469 1.03656 0.85154 0.77114 0.78819 0.78325 1.19825 1.22432 1.20473 1.19688 0.91692 0.85040 1.41201 0.89974 1.42405 1.05305 1.00952 1.87496 1.21262 0.95799 0.84608 0.94445 0.90350 1.24185 0.98092 0.99554 0.99533 1.22156 0.97318 0.81482 0.96609 0.91569 1.45893 1.40157 1.08627 1.40389 1.21429 0.78680 0.91891 0.78517 1.90718 1.45472 1.56994 1.54300 1.21415 1.02656 0.89381 0.98467 1.21492 1.02845 0.94432 0.95466 1.22185 1.00545 0.95694 0.99264 1.21841 0.97700 0.81463 0.94759 1.86474 1.93171 1.18165 1.41568 1.21447 1.02841 0.92859 0.97392 1.21248 0.98375 0.95751 0.97956 1.23726 1.00036 0.99159 0.94667 0.94040 0.79742 0.87528 0.95009 0.74413 0.86023 0.92186 0.88840 0.90111 0.89341 0.92844 0.75579 0.90581 0.91558 0.92135 0.92636 0.92147 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.38 13.06 21.65 0.28 -61.09 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 7 C -0.24 -13.71 9.97 84.03 0.84 -12.87 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 9 N -0.72 -37.12 5.31 -320.44 -1.70 -38.82 16 10 C 0.15 5.66 4.56 45.52 0.21 5.87 16 11 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 12 C -0.17 -5.87 7.68 31.12 0.24 -5.63 16 13 C 0.13 4.20 4.11 45.52 0.19 4.39 16 14 H 0.07 2.82 7.46 -2.39 -0.02 2.80 16 15 N -0.70 -16.37 5.25 -440.03 -2.31 -18.68 16 16 C 0.51 13.78 7.15 87.66 0.63 14.41 16 17 O -0.59 -23.36 15.58 -3.02 -0.05 -23.41 16 18 C -0.10 -1.70 2.53 -11.54 -0.03 -1.73 16 19 C -0.10 -1.25 5.10 30.60 0.16 -1.10 16 20 C -0.14 -1.27 5.55 30.59 0.17 -1.10 16 21 C 0.10 1.33 3.47 30.59 0.11 1.43 16 22 O -0.59 -7.88 13.32 -148.98 -1.98 -9.86 16 23 C -0.11 -1.72 5.57 30.61 0.17 -1.55 16 24 C -0.10 -1.91 4.49 30.61 0.14 -1.77 16 25 C -0.14 -3.95 7.58 31.12 0.24 -3.71 16 26 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.37 20.89 7.90 -92.71 -0.73 20.16 16 28 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.42 5.99 8.15 -92.71 -0.76 5.23 16 31 H 0.12 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.76 7.56 -2.38 -0.02 0.74 16 34 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.39 1.89 9.08 -74.05 -0.67 1.21 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 41 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.13 2.47 8.12 -2.39 -0.02 2.45 16 Total: -1.00 -77.35 346.79 -1.36 -78.71 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -1.14 Total: 31.98 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 3.51 Total: -7.58 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -3.73 Total: -118.60 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -2.03 Total: -33.27 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -77.35 -1.36 -78.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020109118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.472 kcal (2) G-P(sol) polarization free energy of solvation -77.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds