Wall clock time and date at job start Tue Mar 31 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99656 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99952 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.85438 * 25.33970 * 10 9 7 12 12 C 1.53789 * 113.61211 * 156.53022 * 10 9 7 13 13 C 1.53787 * 87.08035 * 139.98364 * 12 10 9 14 14 H 1.08997 * 113.61200 * 89.20145 * 13 12 10 15 15 N 1.46495 * 113.61098 * 220.01981 * 13 12 10 16 16 C 1.34776 * 119.99758 * 204.99940 * 15 13 12 17 17 O 1.21279 * 120.00242 * 0.02562 * 16 15 13 18 18 C 1.50705 * 119.99853 * 180.02562 * 16 15 13 19 19 C 1.53001 * 109.46929 * 179.97438 * 18 16 15 20 20 C 1.53173 * 109.54915 * 294.56156 * 19 18 16 21 21 C 1.53089 * 109.16687 * 183.15088 * 20 19 18 22 22 O 1.42905 * 109.41561 * 57.60858 * 21 20 19 23 23 C 1.42911 * 114.09461 * 298.84111 * 22 21 20 24 24 C 1.53098 * 109.41292 * 61.15659 * 23 22 21 25 25 C 1.53775 * 113.61907 * 254.13602 * 10 9 7 26 26 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 28 28 H 1.08995 * 113.61603 * 254.53212 * 12 10 9 29 29 H 1.08996 * 113.60917 * 25.43561 * 12 10 9 30 30 H 0.96998 * 120.00247 * 25.00197 * 15 13 12 31 31 H 1.08991 * 109.47364 * 300.00012 * 18 16 15 32 32 H 1.08996 * 109.47032 * 60.00775 * 18 16 15 33 33 H 1.09004 * 109.54134 * 54.82902 * 19 18 16 34 34 H 1.09006 * 109.51927 * 303.05684 * 20 19 18 35 35 H 1.08999 * 109.52545 * 63.24356 * 20 19 18 36 36 H 1.08994 * 109.48058 * 297.62474 * 21 20 19 37 37 H 1.08999 * 109.48330 * 177.58308 * 21 20 19 38 38 H 1.08999 * 109.48175 * 301.17768 * 23 22 21 39 39 H 1.09000 * 109.48892 * 181.14167 * 23 22 21 40 40 H 1.08999 * 109.51694 * 182.48354 * 24 23 22 41 41 H 1.08997 * 109.57135 * 62.33107 * 24 23 22 42 42 H 1.08999 * 113.61615 * 334.57730 * 25 10 9 43 43 H 1.09004 * 113.61417 * 105.47162 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0559 -3.5694 0.4304 12 6 1.2467 -4.8365 0.5617 13 6 1.8606 -5.6903 -0.5604 14 1 2.8042 -6.1609 -0.2844 15 7 0.9138 -6.6281 -1.1690 16 6 1.3653 -7.7475 -1.7684 17 8 2.5553 -7.9788 -1.8037 18 6 0.3914 -8.7119 -2.3950 19 6 1.1581 -9.8885 -3.0023 20 6 2.0240 -9.3913 -4.1638 21 6 2.7260 -10.5860 -4.8146 22 8 1.7476 -11.5301 -5.2545 23 6 0.9394 -12.0650 -4.2043 24 6 0.1657 -10.9297 -3.5289 25 6 2.0326 -4.3829 -1.3547 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3881 0.0042 28 1 1.5551 -5.1422 1.5615 29 1 0.1683 -4.7068 0.4715 30 1 -0.0380 -6.4433 -1.1405 31 1 -0.2962 -9.0800 -1.6337 32 1 -0.1713 -8.2029 -3.1775 33 1 1.7926 -10.3422 -2.2408 34 1 1.3939 -8.8934 -4.9007 35 1 2.7700 -8.6909 -3.7882 36 1 3.3869 -11.0591 -4.0884 37 1 3.3101 -10.2433 -5.6687 38 1 1.5769 -12.5575 -3.4700 39 1 0.2365 -12.7878 -4.6185 40 1 -0.4174 -11.3295 -2.6993 41 1 -0.5027 -10.4626 -4.2522 42 1 1.1694 -4.1290 -1.9700 43 1 2.9745 -4.3229 -1.9000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021913835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:25 Heat of formation + Delta-G solvation = -69.718538 kcal Electronic energy + Delta-G solvation = -21971.808747 eV Core-core repulsion = 18631.118315 eV Total energy + Delta-G solvation = -3340.690432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29802 -39.25860 -37.94714 -34.78858 -34.07955 -32.73551 -31.29047 -30.06923 -28.98819 -25.15273 -24.80719 -23.85712 -23.64875 -21.96216 -20.45518 -20.17115 -19.21592 -17.22911 -16.95388 -16.38111 -16.21160 -16.09857 -15.54239 -14.93803 -14.68909 -14.64543 -14.31975 -13.99665 -13.31307 -13.08639 -12.99005 -12.70074 -12.51081 -12.27157 -11.95533 -11.92006 -11.53134 -11.27728 -11.20954 -10.93834 -10.83922 -10.64255 -10.52781 -10.51279 -10.31865 -10.07398 -9.86446 -9.68147 -9.45899 -8.92879 -8.74658 -7.00986 -5.82316 -3.11298 2.67504 3.27358 3.41735 3.46293 3.47207 3.66282 4.42106 4.46613 4.53288 4.56914 4.76004 4.88790 5.00906 5.04657 5.13314 5.19092 5.22227 5.26084 5.33730 5.36084 5.45431 5.48084 5.55967 5.61162 5.67527 5.83759 5.84677 5.92481 6.06547 6.12413 6.15878 6.22190 6.28642 6.50405 6.58835 6.74124 6.97600 7.04376 7.63030 7.66297 8.30435 8.36294 9.47523 10.04048 10.38596 11.40047 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041306 B = 0.002576 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.700621 B =10865.394131 C =11035.402594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.711 5.711 10 C 0.168 3.832 11 H 0.078 0.922 12 C -0.158 4.158 13 C 0.117 3.883 14 H 0.108 0.892 15 N -0.715 5.715 16 C 0.511 3.489 17 O -0.544 6.544 18 C -0.138 4.138 19 C -0.072 4.072 20 C -0.156 4.156 21 C 0.062 3.938 22 O -0.387 6.387 23 C 0.062 3.938 24 C -0.153 4.153 25 C -0.175 4.175 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.399 0.601 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 -23.024 -5.632 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.056 3.944 11 H 0.096 0.904 12 C -0.198 4.198 13 C 0.012 3.988 14 H 0.126 0.874 15 N -0.365 5.365 16 C 0.297 3.703 17 O -0.422 6.422 18 C -0.178 4.178 19 C -0.091 4.091 20 C -0.194 4.194 21 C -0.015 4.015 22 O -0.306 6.306 23 C -0.015 4.015 24 C -0.190 4.190 25 C -0.218 4.218 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.233 0.767 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.017 -23.042 -5.826 23.767 hybrid contribution -0.460 1.199 0.300 1.319 sum -0.443 -21.843 -5.526 22.536 Atomic orbital electron populations 1.69646 1.05161 1.25918 1.57439 1.24767 0.95543 0.97826 1.02726 0.86248 0.78540 0.83362 0.77925 1.21191 1.21669 1.21174 1.19269 0.91121 0.84155 1.43054 0.91046 1.42347 1.05663 0.99763 1.87094 1.21349 0.95374 0.84960 0.92742 0.90362 1.23839 1.01056 0.97431 0.97484 1.22510 0.93470 0.87706 0.95106 0.87394 1.46106 1.10626 1.22319 1.57446 1.20651 0.89710 0.81843 0.78066 1.90644 1.17100 1.75693 1.58802 1.21754 0.98377 0.96248 1.01424 1.20920 0.96300 0.94250 0.97639 1.22366 1.00765 0.98982 0.97266 1.22591 0.90215 0.89114 0.99542 1.87916 1.49417 1.59752 1.33526 1.22538 0.93639 0.94967 0.90376 1.22278 0.98615 0.97201 1.00950 1.24349 1.01727 0.95099 1.00612 0.93384 0.78106 0.91548 0.89993 0.76674 0.88928 0.88867 0.90268 0.91619 0.88688 0.93172 0.88977 0.93276 0.89032 0.90850 0.90894 0.90258 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.42 5.41 -52.64 -0.28 -17.71 16 10 C 0.17 3.25 4.47 -67.12 -0.30 2.95 16 11 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 12 C -0.16 -2.44 7.58 -25.91 -0.20 -2.64 16 13 C 0.12 1.71 4.24 -67.03 -0.28 1.43 16 14 H 0.11 1.67 7.46 -51.93 -0.39 1.28 16 15 N -0.72 -8.72 5.36 -52.93 -0.28 -9.00 16 16 C 0.51 6.35 7.57 -10.98 -0.08 6.27 16 17 O -0.54 -8.62 13.61 5.56 0.08 -8.54 16 18 C -0.14 -1.20 5.18 -27.88 -0.14 -1.34 16 19 C -0.07 -0.66 1.91 -90.44 -0.17 -0.83 16 20 C -0.16 -1.61 5.13 -26.60 -0.14 -1.75 16 21 C 0.06 0.60 6.84 37.20 0.25 0.85 16 22 O -0.39 -4.07 10.77 -35.23 -0.38 -4.45 16 23 C 0.06 0.49 6.84 37.21 0.25 0.74 16 24 C -0.15 -1.12 5.42 -26.59 -0.14 -1.26 16 25 C -0.18 -3.04 7.69 -25.83 -0.20 -3.24 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.38 9.93 7.90 -40.82 -0.32 9.60 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 30 H 0.40 3.97 8.73 -40.82 -0.36 3.61 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.82 7.95 -51.93 -0.41 0.40 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.18 6.07 -51.93 -0.32 0.87 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -31.81 345.58 -8.62 -40.43 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.25 Total: 10.13 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.40 Total: -6.15 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.16 Total: -53.78 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.30 Total: -12.99 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.81 -8.62 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021913835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.290 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds