Wall clock time and date at job start Tue Mar 31 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47538 * 240.00180 * 3 2 1 5 5 H 1.48506 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47145 * 120.00267 * 3 2 1 7 7 C 1.38811 * 120.00522 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00467 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99899 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46840 * 204.99684 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 14 14 N 1.46496 * 109.47487 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00072 * 275.00191 * 14 13 12 16 16 O 1.21273 * 120.00144 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99935 * 179.97438 * 15 14 13 18 18 H 1.09004 * 110.27508 * 305.63977 * 17 15 14 19 19 C 1.54945 * 110.30990 * 67.83135 * 17 15 14 20 20 C 1.55309 * 100.94213 * 155.36100 * 19 17 15 21 21 C 1.54389 * 102.25156 * 325.86805 * 20 19 17 22 22 O 1.43242 * 107.58429 * 21.35588 * 21 20 19 23 23 C 1.53005 * 109.47159 * 300.00546 * 13 12 11 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 13 12 25 25 H 0.97004 * 120.00344 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99534 * 359.97438 * 9 7 2 27 27 H 1.08992 * 109.47397 * 325.00020 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 30 30 H 1.08996 * 109.47853 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 32 32 H 1.09002 * 109.46716 * 60.00091 * 13 12 11 33 33 H 0.97007 * 119.99693 * 95.00333 * 14 13 12 34 34 H 1.09001 * 111.12775 * 273.27914 * 19 17 15 35 35 H 1.08998 * 111.12487 * 37.44418 * 19 17 15 36 36 H 1.08993 * 110.84777 * 207.68182 * 20 19 17 37 37 H 1.08996 * 110.84567 * 84.05525 * 20 19 17 38 38 H 1.08994 * 109.83079 * 261.84194 * 21 20 19 39 39 H 1.09003 * 109.90507 * 140.90850 * 21 20 19 40 40 H 1.09002 * 109.46935 * 299.99411 * 23 13 12 41 41 H 1.09001 * 109.46812 * 179.97438 * 23 13 12 42 42 H 1.08993 * 109.47194 * 179.97438 * 24 23 13 43 43 H 1.09002 * 109.46695 * 59.99734 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7466 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 6 1.1810 -4.7515 -0.6133 12 6 1.9457 -6.0767 -0.6139 13 6 2.3092 -6.4565 0.8229 14 7 3.0410 -7.7256 0.8224 15 6 2.3664 -8.8924 0.8217 16 8 1.1537 -8.8918 0.8220 17 6 3.1192 -10.1980 0.8206 18 1 3.8239 -10.2270 -0.0105 19 6 3.8631 -10.3909 2.1660 20 6 3.9866 -11.9383 2.2153 21 6 2.6787 -12.3933 1.5327 22 8 2.2035 -11.3014 0.7367 23 6 3.1864 -5.3616 1.4336 24 6 2.4216 -4.0365 1.4342 25 1 -0.4851 0.8401 0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 2.9688 -3.5500 -0.5920 28 1 0.2702 -4.8583 -0.0239 29 1 0.9217 -4.4808 -1.6368 30 1 1.3211 -6.8566 -1.0492 31 1 2.8567 -5.9702 -1.2030 32 1 1.3983 -6.5630 1.4120 33 1 4.0110 -7.7261 0.8226 34 1 4.8454 -9.9190 2.1431 35 1 3.2693 -10.0176 3.0003 36 1 4.0297 -12.2914 3.2455 37 1 4.8562 -12.2762 1.6515 38 1 1.9369 -12.6499 2.2889 39 1 2.8728 -13.2573 0.8971 40 1 4.0973 -5.2551 0.8445 41 1 3.4449 -5.6320 2.4574 42 1 3.0463 -3.2566 1.8696 43 1 1.5107 -4.1430 2.0233 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026448954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:29 Heat of formation + Delta-G solvation = -88.127676 kcal Electronic energy + Delta-G solvation = -22378.709500 eV Core-core repulsion = 19037.220787 eV Total energy + Delta-G solvation = -3341.488712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.55595 -39.06882 -37.65147 -34.85100 -33.19039 -32.44891 -30.92842 -30.39218 -29.81728 -27.21964 -24.25852 -23.27230 -22.30461 -22.10817 -21.07093 -20.43942 -19.42639 -17.81482 -17.16073 -16.94914 -16.12374 -15.68819 -15.23661 -15.02845 -14.69349 -14.01077 -13.89254 -13.70776 -13.58633 -13.53067 -12.84310 -12.58716 -12.39912 -12.18877 -12.10157 -11.81967 -11.77536 -11.42962 -11.38141 -10.86715 -10.78299 -10.72273 -10.68677 -10.25139 -10.21845 -10.16329 -9.70565 -9.65408 -9.43926 -8.99547 -8.83415 -6.92567 -5.73581 -3.02269 2.49096 2.78642 3.44807 3.49111 3.50442 3.64648 3.97103 4.33814 4.42736 4.60955 4.68452 4.69454 4.86263 4.97043 5.08132 5.19940 5.24182 5.31768 5.37704 5.38930 5.55464 5.59957 5.62546 5.67490 5.76226 5.85619 5.89730 6.06168 6.28537 6.29827 6.32714 6.46738 6.52645 6.61392 6.67420 6.72358 7.00234 7.14628 7.43966 7.71368 8.16826 8.45218 9.55887 10.15254 10.49715 11.49111 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.052275 B = 0.002827 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.501610 B = 9901.227154 C =10191.654785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.178 3.822 11 C -0.121 4.121 12 C -0.121 4.121 13 C 0.146 3.854 14 N -0.723 5.723 15 C 0.510 3.490 16 O -0.518 6.518 17 C 0.063 3.937 18 H 0.096 0.904 19 C -0.146 4.146 20 C -0.154 4.154 21 C 0.047 3.953 22 O -0.354 6.354 23 C -0.121 4.121 24 C -0.132 4.132 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.397 0.603 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.472 -23.749 4.028 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.068 3.932 11 C -0.160 4.160 12 C -0.160 4.160 13 C 0.042 3.958 14 N -0.375 5.375 15 C 0.294 3.706 16 O -0.393 6.393 17 C 0.002 3.998 18 H 0.114 0.886 19 C -0.184 4.184 20 C -0.192 4.192 21 C -0.029 4.029 22 O -0.272 6.272 23 C -0.159 4.159 24 C -0.173 4.173 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.231 0.769 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.474 -23.600 3.894 26.112 hybrid contribution 0.873 0.901 0.171 1.267 sum 11.347 -22.699 4.065 25.701 Atomic orbital electron populations 1.69651 1.05099 1.25719 1.57690 1.24744 0.95496 0.97655 1.03158 0.86289 0.78518 0.83714 0.77779 1.21322 1.21733 1.21339 1.19194 0.90908 0.84189 1.42637 0.91293 1.42441 1.05831 0.99781 1.88525 1.20231 0.94381 0.86054 0.92572 1.21765 0.98978 0.93614 1.01670 1.21842 1.00531 0.97896 0.95767 1.21126 0.95899 0.81256 0.97470 1.46094 1.10121 1.05671 1.75635 1.20399 0.88411 0.84996 0.76756 1.90741 1.13711 1.87229 1.47590 1.22863 0.91017 0.86873 0.99016 0.88640 1.23252 1.01565 0.96739 0.96797 1.23132 0.98487 0.95082 1.02470 1.23218 0.95264 0.89963 0.94475 1.88550 1.46765 1.22848 1.69077 1.21809 0.98676 0.95447 1.00008 1.22227 0.99721 0.94096 1.01238 0.93481 0.78267 0.93619 0.92050 0.91592 0.92009 0.92024 0.89460 0.76936 0.88907 0.89629 0.89536 0.90086 0.90994 0.90962 0.91815 0.92262 0.91549 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -18.24 5.12 -53.43 -0.27 -18.51 16 10 C 0.18 3.48 2.77 -67.93 -0.19 3.29 16 11 C -0.12 -2.09 5.39 -26.73 -0.14 -2.24 16 12 C -0.12 -1.75 5.49 -26.73 -0.15 -1.90 16 13 C 0.15 1.94 2.45 -67.93 -0.17 1.78 16 14 N -0.72 -7.68 5.08 -53.81 -0.27 -7.95 16 15 C 0.51 6.52 7.14 -10.98 -0.08 6.44 16 16 O -0.52 -9.28 16.21 -13.76 -0.22 -9.51 16 17 C 0.06 0.60 3.86 -26.85 -0.10 0.50 16 18 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 19 C -0.15 -0.92 6.56 -24.48 -0.16 -1.09 16 20 C -0.15 -0.80 7.02 -24.78 -0.17 -0.97 16 21 C 0.05 0.36 7.80 37.89 0.30 0.66 16 22 O -0.35 -4.25 10.61 -54.56 -0.58 -4.83 16 23 C -0.12 -1.55 5.39 -26.73 -0.14 -1.69 16 24 C -0.13 -2.27 5.50 -26.73 -0.15 -2.42 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.38 10.36 7.80 -40.82 -0.32 10.04 16 27 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 33 H 0.40 2.86 8.60 -40.82 -0.35 2.51 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.64 8.05 -51.93 -0.42 0.22 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -34.21 345.99 -9.20 -43.42 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.36 Total: 7.39 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -1.40 Total: -4.89 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.18 Total: -54.18 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.80 Total: -14.34 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.21 -9.20 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026448954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.712 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds