Wall clock time and date at job start Tue Mar 31 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47538 * 240.00180 * 3 2 1 5 5 H 1.48506 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47145 * 120.00267 * 3 2 1 7 7 C 1.38811 * 120.00522 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00467 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99899 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46840 * 204.99684 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 14 14 N 1.46496 * 109.47487 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00072 * 275.00191 * 14 13 12 16 16 O 1.21273 * 120.00144 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99935 * 179.97438 * 15 14 13 18 18 H 1.09004 * 110.27508 * 305.63977 * 17 15 14 19 19 C 1.54945 * 110.30990 * 67.83135 * 17 15 14 20 20 C 1.55309 * 100.94213 * 155.36100 * 19 17 15 21 21 C 1.54389 * 102.25156 * 325.86805 * 20 19 17 22 22 O 1.43242 * 107.58429 * 21.35588 * 21 20 19 23 23 C 1.53005 * 109.47159 * 300.00546 * 13 12 11 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 13 12 25 25 H 0.97004 * 120.00344 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99534 * 359.97438 * 9 7 2 27 27 H 1.08992 * 109.47397 * 325.00020 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 30 30 H 1.08996 * 109.47853 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 32 32 H 1.09002 * 109.46716 * 60.00091 * 13 12 11 33 33 H 0.97007 * 119.99693 * 95.00333 * 14 13 12 34 34 H 1.09001 * 111.12775 * 273.27914 * 19 17 15 35 35 H 1.08998 * 111.12487 * 37.44418 * 19 17 15 36 36 H 1.08993 * 110.84777 * 207.68182 * 20 19 17 37 37 H 1.08996 * 110.84567 * 84.05525 * 20 19 17 38 38 H 1.08994 * 109.83079 * 261.84194 * 21 20 19 39 39 H 1.09003 * 109.90507 * 140.90850 * 21 20 19 40 40 H 1.09002 * 109.46935 * 299.99411 * 23 13 12 41 41 H 1.09001 * 109.46812 * 179.97438 * 23 13 12 42 42 H 1.08993 * 109.47194 * 179.97438 * 24 23 13 43 43 H 1.09002 * 109.46695 * 59.99734 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7466 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 6 1.1810 -4.7515 -0.6133 12 6 1.9457 -6.0767 -0.6139 13 6 2.3092 -6.4565 0.8229 14 7 3.0410 -7.7256 0.8224 15 6 2.3664 -8.8924 0.8217 16 8 1.1537 -8.8918 0.8220 17 6 3.1192 -10.1980 0.8206 18 1 3.8239 -10.2270 -0.0105 19 6 3.8631 -10.3909 2.1660 20 6 3.9866 -11.9383 2.2153 21 6 2.6787 -12.3933 1.5327 22 8 2.2035 -11.3014 0.7367 23 6 3.1864 -5.3616 1.4336 24 6 2.4216 -4.0365 1.4342 25 1 -0.4851 0.8401 0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 2.9688 -3.5500 -0.5920 28 1 0.2702 -4.8583 -0.0239 29 1 0.9217 -4.4808 -1.6368 30 1 1.3211 -6.8566 -1.0492 31 1 2.8567 -5.9702 -1.2030 32 1 1.3983 -6.5630 1.4120 33 1 4.0110 -7.7261 0.8226 34 1 4.8454 -9.9190 2.1431 35 1 3.2693 -10.0176 3.0003 36 1 4.0297 -12.2914 3.2455 37 1 4.8562 -12.2762 1.6515 38 1 1.9369 -12.6499 2.2889 39 1 2.8728 -13.2573 0.8971 40 1 4.0973 -5.2551 0.8445 41 1 3.4449 -5.6320 2.4574 42 1 3.0463 -3.2566 1.8696 43 1 1.5107 -4.1430 2.0233 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026448954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:29 Heat of formation + Delta-G solvation = -112.241536 kcal Electronic energy + Delta-G solvation = -22379.755155 eV Core-core repulsion = 19037.220787 eV Total energy + Delta-G solvation = -3342.534368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44913 -40.04150 -38.87563 -36.35993 -34.72088 -33.19537 -32.46736 -31.69836 -30.78382 -28.68053 -25.74142 -24.51073 -23.61133 -22.60365 -22.36359 -21.48033 -20.77781 -19.11274 -18.59740 -17.85577 -17.09588 -16.84809 -16.44061 -16.09835 -15.81263 -15.47920 -15.34313 -15.06732 -14.59488 -14.46016 -14.20636 -14.01312 -13.58410 -13.18032 -13.08907 -12.98138 -12.76731 -12.71316 -12.42948 -12.27277 -12.26108 -12.03895 -12.00950 -11.83161 -11.70205 -11.60511 -11.15023 -10.99173 -10.83909 -10.40200 -10.06000 -8.98601 -7.91573 -5.20367 1.47937 1.51299 1.54628 1.57243 1.91216 2.58145 2.98974 3.41184 3.43894 3.65976 3.75808 3.88223 3.89075 3.93794 4.14236 4.16787 4.24893 4.36207 4.39247 4.40189 4.53082 4.59501 4.66777 4.78250 4.81523 4.85242 4.90440 4.98825 5.00612 5.11205 5.12410 5.21115 5.22915 5.29601 5.46502 5.54054 5.55190 5.65917 5.92832 6.30388 6.59018 7.26422 7.35481 8.13062 8.35636 9.32276 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.052275 B = 0.002827 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.501610 B = 9901.227154 C =10191.654785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.742 5.742 10 C 0.173 3.827 11 C -0.114 4.114 12 C -0.111 4.111 13 C 0.152 3.848 14 N -0.702 5.702 15 C 0.505 3.495 16 O -0.580 6.580 17 C 0.062 3.938 18 H 0.126 0.874 19 C -0.140 4.140 20 C -0.144 4.144 21 C 0.036 3.964 22 O -0.397 6.397 23 C -0.105 4.105 24 C -0.124 4.124 25 H 0.249 0.751 26 H 0.369 0.631 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.419 0.581 34 H 0.127 0.873 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.253 -25.123 4.394 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.202 1.202 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.381 5.381 10 C 0.065 3.935 11 C -0.153 4.153 12 C -0.150 4.150 13 C 0.048 3.952 14 N -0.356 5.356 15 C 0.292 3.708 16 O -0.459 6.459 17 C 0.002 3.998 18 H 0.143 0.857 19 C -0.178 4.178 20 C -0.181 4.181 21 C -0.040 4.040 22 O -0.316 6.316 23 C -0.143 4.143 24 C -0.165 4.165 25 H 0.058 0.942 26 H 0.200 0.800 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.257 0.743 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.358 -25.022 4.268 29.163 hybrid contribution -0.323 1.236 0.042 1.278 sum 14.034 -23.786 4.311 27.952 Atomic orbital electron populations 1.69830 1.06776 1.25982 1.59951 1.25597 0.96341 1.01236 1.04173 0.85209 0.77130 0.79157 0.78265 1.20281 1.22583 1.20235 1.19626 0.91516 0.85124 1.40443 0.90240 1.42709 1.05405 1.01258 1.88691 1.20481 0.94207 0.84470 0.94307 1.21642 0.98501 0.94649 1.00469 1.21734 1.00733 0.95531 0.96972 1.20836 0.95505 0.82749 0.96150 1.45811 1.11085 1.04166 1.74497 1.21182 0.87900 0.86526 0.75187 1.90717 1.16552 1.88119 1.50494 1.23071 0.90543 0.84265 1.01929 0.85699 1.23305 1.02403 0.97907 0.94204 1.23141 0.97640 0.93955 1.03352 1.23446 0.96569 0.89422 0.94570 1.88510 1.48672 1.24365 1.70058 1.21663 0.98462 0.92266 1.01955 1.22017 0.99394 0.96400 0.98693 0.94199 0.79984 0.93151 0.93601 0.92630 0.93063 0.89840 0.92305 0.74281 0.85493 0.91202 0.88162 0.87875 0.91731 0.89640 0.89195 0.89955 0.92735 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.96 13.06 21.65 0.28 -60.68 16 2 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 3 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.24 -13.05 9.93 84.03 0.83 -12.21 16 8 H 0.08 4.15 7.83 -2.92 -0.02 4.13 16 9 N -0.74 -37.98 5.12 -322.95 -1.65 -39.64 16 10 C 0.17 6.74 2.77 44.99 0.12 6.86 16 11 C -0.11 -3.98 5.39 30.59 0.16 -3.81 16 12 C -0.11 -3.08 5.49 30.59 0.17 -2.91 16 13 C 0.15 3.83 2.45 44.99 0.11 3.94 16 14 N -0.70 -13.10 5.08 -442.54 -2.25 -15.35 16 15 C 0.51 12.35 7.14 87.66 0.63 12.98 16 16 O -0.58 -21.30 16.21 15.47 0.25 -21.05 16 17 C 0.06 1.04 3.86 30.51 0.12 1.15 16 18 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 19 C -0.14 -1.31 6.56 32.05 0.21 -1.10 16 20 C -0.14 -1.00 7.02 31.86 0.22 -0.77 16 21 C 0.04 0.50 7.80 72.45 0.56 1.06 16 22 O -0.40 -9.24 10.61 -130.50 -1.38 -10.63 16 23 C -0.10 -2.39 5.39 30.60 0.16 -2.22 16 24 C -0.12 -4.17 5.50 30.59 0.17 -4.01 16 25 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 26 H 0.37 20.73 7.80 -92.70 -0.72 20.01 16 27 H 0.05 1.92 8.08 -2.39 -0.02 1.91 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 1.86 7.58 -2.39 -0.02 1.85 16 33 H 0.42 4.18 8.60 -92.70 -0.80 3.39 16 34 H 0.13 0.32 8.14 -2.39 -0.02 0.31 16 35 H 0.07 0.89 8.05 -2.39 -0.02 0.87 16 36 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -78.04 345.99 0.70 -77.34 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.52 Total: 27.01 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 3.94 Total: -5.32 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -3.62 Total: -115.66 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -1.13 Total: -31.68 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -78.04 0.70 -77.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026448954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.904 kcal (2) G-P(sol) polarization free energy of solvation -78.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds