Wall clock time and date at job start Tue Mar 31 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48506 * 109.46550 * 354.58112 * 3 2 1 5 5 H 1.48494 * 109.47087 * 234.58235 * 3 2 1 6 6 H 1.48497 * 109.47145 * 114.57733 * 3 2 1 7 7 C 1.38820 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99500 * 8.16496 * 7 2 1 9 9 N 1.36931 * 120.00241 * 188.16346 * 7 2 1 10 10 C 1.47424 * 125.64548 * 29.02928 * 9 7 2 11 11 C 1.54910 * 104.83161 * 155.83780 * 10 9 7 12 12 C 1.55147 * 101.58325 * 37.00824 * 11 10 9 13 13 C 1.47016 * 125.65276 * 208.72317 * 9 7 2 14 14 H 1.09000 * 109.87938 * 300.51609 * 13 9 7 15 15 C 1.53005 * 109.87971 * 61.67585 * 13 9 7 16 16 N 1.46502 * 109.47274 * 300.59584 * 15 13 9 17 17 C 1.34772 * 119.99765 * 173.92357 * 16 15 13 18 18 O 1.21282 * 120.00115 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99853 * 180.02562 * 17 16 15 20 20 C 1.53177 * 109.54050 * 299.55435 * 19 17 16 21 21 C 1.53090 * 109.16266 * 183.15278 * 20 19 17 22 22 O 1.42909 * 109.41521 * 57.60789 * 21 20 19 23 23 C 1.42905 * 114.09618 * 298.84367 * 22 21 20 24 24 C 1.53086 * 109.41410 * 61.15656 * 23 22 21 25 25 H 0.97001 * 120.00018 * 184.72738 * 1 2 3 26 26 H 1.09006 * 110.36907 * 274.67190 * 10 9 7 27 27 H 1.09002 * 110.36853 * 36.99602 * 10 9 7 28 28 H 1.08996 * 111.00559 * 155.08543 * 11 10 9 29 29 H 1.09005 * 111.00332 * 278.89509 * 11 10 9 30 30 H 1.09001 * 110.72117 * 82.86435 * 12 11 10 31 31 H 1.09000 * 110.72445 * 205.95747 * 12 11 10 32 32 H 1.08994 * 109.47208 * 60.60335 * 15 13 9 33 33 H 1.09002 * 109.46957 * 180.60118 * 15 13 9 34 34 H 0.96996 * 119.99607 * 353.93041 * 16 15 13 35 35 H 1.08998 * 109.54378 * 59.82291 * 19 17 16 36 36 H 1.08993 * 109.52591 * 303.05757 * 20 19 17 37 37 H 1.09008 * 109.52150 * 63.24782 * 20 19 17 38 38 H 1.09001 * 109.47985 * 297.62991 * 21 20 19 39 39 H 1.08996 * 109.48518 * 177.59448 * 21 20 19 40 40 H 1.08997 * 109.48124 * 301.17495 * 23 22 21 41 41 H 1.08994 * 109.48036 * 181.13913 * 23 22 21 42 42 H 1.09004 * 109.52121 * 182.48254 * 24 23 22 43 43 H 1.09002 * 109.57573 * 62.33144 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2906 2.7433 -0.1322 5 1 3.2004 1.6406 -1.1409 6 1 3.0020 1.7552 1.2732 7 6 2.0103 -1.2022 -0.0005 8 1 1.4784 -2.1327 -0.1338 9 7 3.3692 -1.2083 0.1678 10 6 4.1458 -0.2089 0.9238 11 6 5.4424 -0.9468 1.3407 12 6 5.7147 -1.8275 0.0927 13 6 4.2948 -2.2161 -0.3699 14 1 4.0341 -3.2018 0.0154 15 6 4.2308 -2.2181 -1.8986 16 7 2.8639 -2.5213 -2.3298 17 6 2.5396 -2.4569 -3.6363 18 8 3.3792 -2.1476 -4.4550 19 6 1.1333 -2.7682 -4.0799 20 6 0.7802 -4.2072 -3.6913 21 6 -0.6195 -4.5400 -4.2147 22 8 -0.6535 -4.3541 -5.6312 23 6 -0.3777 -3.0162 -6.0509 24 6 1.0316 -2.6223 -5.6012 25 1 -0.4850 -0.8372 0.0692 26 1 4.3828 0.6458 0.2902 27 1 3.5924 0.1135 1.8058 28 1 6.2570 -0.2419 1.5067 29 1 5.2748 -1.5621 2.2248 30 1 6.2321 -1.2555 -0.6775 31 1 6.2885 -2.7137 0.3638 32 1 4.5218 -1.2378 -2.2757 33 1 4.9112 -2.9746 -2.2897 34 1 2.1923 -2.7682 -1.6749 35 1 0.4386 -2.0786 -3.6002 36 1 1.5056 -4.8916 -4.1308 37 1 0.7961 -4.3057 -2.6058 38 1 -1.3496 -3.8816 -3.7440 39 1 -0.8590 -5.5767 -3.9782 40 1 -1.1046 -2.3380 -5.6042 41 1 -0.4430 -2.9553 -7.1372 42 1 1.2275 -1.5873 -5.8818 43 1 1.7631 -3.2739 -6.0794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027719424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:51 Heat of formation + Delta-G solvation = -72.400045 kcal Electronic energy + Delta-G solvation = -23690.043244 eV Core-core repulsion = 20349.236533 eV Total energy + Delta-G solvation = -3340.806711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.94551 -38.56577 -37.73348 -33.94148 -33.49074 -32.85432 -31.03846 -29.92891 -29.41769 -26.07871 -24.57192 -23.52770 -23.21239 -21.31798 -20.58472 -19.71969 -19.12815 -17.70362 -16.77510 -16.01562 -15.85411 -15.71338 -15.17445 -15.07828 -14.75999 -14.40855 -13.75900 -13.51780 -13.48763 -13.23172 -13.02036 -12.44396 -12.37896 -12.24326 -11.75430 -11.45360 -11.28051 -11.23450 -11.12261 -10.99984 -10.77367 -10.55438 -10.50147 -10.34969 -10.01707 -9.72195 -9.48511 -9.22059 -9.07056 -8.77684 -8.30578 -7.07786 -6.43456 -3.49665 3.19094 3.35799 3.47717 3.64385 3.77568 3.93990 4.51363 4.77376 4.87047 4.91673 4.97891 5.07726 5.16199 5.25271 5.28307 5.38761 5.44016 5.50669 5.58841 5.68859 5.69639 5.77082 5.80102 5.87647 5.91543 6.04732 6.06772 6.11823 6.20376 6.21582 6.29080 6.35853 6.40176 6.58810 6.70967 6.80382 7.14054 7.20250 7.65783 8.20504 8.22333 8.82706 8.87402 9.40089 10.14723 11.02724 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018527 B = 0.005775 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.915592 B = 4847.015498 C = 5562.030704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 1.063 2.937 4 H -0.300 1.300 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.321 4.321 8 H 0.068 0.932 9 N -0.603 5.603 10 C 0.108 3.892 11 C -0.131 4.131 12 C -0.124 4.124 13 C 0.144 3.856 14 H 0.043 0.957 15 C 0.116 3.884 16 N -0.698 5.698 17 C 0.516 3.484 18 O -0.564 6.564 19 C -0.110 4.110 20 C -0.144 4.144 21 C 0.063 3.937 22 O -0.386 6.386 23 C 0.060 3.940 24 C -0.132 4.132 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.409 0.591 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.854 -6.880 -4.066 8.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.207 4.207 3 Si 0.895 3.105 4 H -0.228 1.228 5 H -0.219 1.219 6 H -0.212 1.212 7 C -0.449 4.449 8 H 0.085 0.915 9 N -0.330 5.330 10 C -0.017 4.017 11 C -0.170 4.170 12 C -0.162 4.162 13 C 0.037 3.963 14 H 0.061 0.939 15 C -0.010 4.010 16 N -0.350 5.350 17 C 0.302 3.698 18 O -0.444 6.444 19 C -0.132 4.132 20 C -0.182 4.182 21 C -0.014 4.014 22 O -0.305 6.305 23 C -0.016 4.016 24 C -0.170 4.170 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.248 0.752 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.098 -5.177 -4.806 8.167 hybrid contribution 0.013 -1.396 0.652 1.541 sum 4.112 -6.574 -4.154 8.796 Atomic orbital electron populations 1.70932 1.05822 1.29509 1.49739 1.26132 0.96420 1.01232 0.96886 0.83887 0.73894 0.76108 0.76652 1.22784 1.21948 1.21180 1.19814 0.79810 0.94243 1.51031 0.91466 1.44811 1.02697 1.27539 1.57943 1.22176 0.91719 0.92604 0.95153 1.22732 0.98030 0.98758 0.97462 1.22519 0.96086 0.99635 0.97995 1.21313 0.90196 0.94236 0.90575 0.93903 1.21875 0.82865 0.99900 0.96379 1.46074 1.13268 1.68108 1.07508 1.20383 0.89639 0.77087 0.82711 1.90615 1.51289 1.49505 1.53005 1.21338 0.95746 0.98417 0.97673 1.22147 0.98570 0.95505 1.01955 1.22570 0.95521 1.01882 0.81425 1.87895 1.91357 1.28992 1.22234 1.22632 0.95224 0.83684 1.00085 1.21969 0.97692 1.03345 0.94016 0.92775 0.95850 0.92165 0.91681 0.91420 0.91332 0.91482 0.92073 0.93307 0.75185 0.88066 0.90800 0.90318 0.92673 0.88735 0.92949 0.88766 0.90282 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 13.70 55.49 0.76 -25.97 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 1.06 25.99 24.70 -169.99 -4.20 21.80 16 4 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 5 H -0.29 -7.19 7.04 56.52 0.40 -6.79 16 6 H -0.28 -6.37 5.59 56.52 0.32 -6.05 16 7 C -0.32 -8.13 8.51 -15.06 -0.13 -8.26 16 8 H 0.07 1.75 6.77 -52.49 -0.36 1.39 16 9 N -0.60 -13.38 2.87 -162.58 -0.47 -13.84 16 10 C 0.11 2.21 4.51 -2.53 -0.01 2.20 16 11 C -0.13 -2.07 7.08 -24.59 -0.17 -2.24 16 12 C -0.12 -1.88 6.47 -24.91 -0.16 -2.04 16 13 C 0.14 2.66 3.38 -66.96 -0.23 2.43 16 14 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 15 C 0.12 2.20 5.22 -4.04 -0.02 2.18 16 16 N -0.70 -13.56 4.72 -60.29 -0.28 -13.84 16 17 C 0.52 10.08 7.16 -10.98 -0.08 10.00 16 18 O -0.56 -12.54 15.95 5.56 0.09 -12.46 16 19 C -0.11 -1.79 2.61 -91.59 -0.24 -2.03 16 20 C -0.14 -1.96 5.30 -26.59 -0.14 -2.10 16 21 C 0.06 0.78 6.84 37.20 0.25 1.03 16 22 O -0.39 -5.34 10.77 -35.23 -0.38 -5.72 16 23 C 0.06 0.77 6.84 37.20 0.25 1.02 16 24 C -0.13 -1.96 4.73 -26.60 -0.13 -2.08 16 25 H 0.26 7.45 8.73 -40.82 -0.36 7.09 16 26 H 0.02 0.51 5.44 -51.93 -0.28 0.23 16 27 H 0.06 1.30 6.60 -51.93 -0.34 0.96 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.01 7.84 -51.93 -0.41 0.60 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.41 8.01 5.33 -40.82 -0.22 7.79 16 35 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.04 7.70 -51.92 -0.40 0.64 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.08 1.20 8.02 -51.93 -0.42 0.78 16 LS Contribution 328.82 15.07 4.96 4.96 Total: -1.00 -30.74 328.82 -7.57 -38.32 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.16 Total: 6.87 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -0.89 Total: -0.11 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.01 Total: -53.66 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.29 Total: -18.17 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -4.20 Total: 21.80 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.74 -7.57 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027719424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.084 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds