Wall clock time and date at job start Tue Mar 31 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99904 * 2 1 4 4 H 1.48494 * 109.47389 * 264.60771 * 3 2 1 5 5 H 1.48503 * 109.46968 * 24.61090 * 3 2 1 6 6 H 1.48502 * 109.46685 * 144.60645 * 3 2 1 7 7 C 1.38812 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00023 * 339.71474 * 7 2 1 9 9 N 1.36941 * 119.99581 * 159.71658 * 7 2 1 10 10 C 1.47741 * 125.82737 * 335.93898 * 9 7 2 11 11 C 1.54910 * 104.84382 * 204.25136 * 10 9 7 12 12 C 1.55155 * 101.57974 * 322.90429 * 11 10 9 13 13 C 1.47023 * 125.64327 * 155.94085 * 9 7 2 14 14 H 1.08997 * 109.88803 * 59.32094 * 13 9 7 15 15 C 1.53008 * 109.88311 * 298.30699 * 13 9 7 16 16 N 1.46502 * 109.46548 * 61.90293 * 15 13 9 17 17 C 1.34772 * 119.99635 * 186.04173 * 16 15 13 18 18 O 1.21282 * 120.00464 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00073 * 180.02562 * 17 16 15 20 20 C 1.53175 * 109.54344 * 60.17514 * 19 17 16 21 21 C 1.53286 * 109.06218 * 176.85375 * 20 19 17 22 22 O 1.42899 * 109.46158 * 302.44847 * 21 20 19 23 23 C 1.42896 * 114.10164 * 61.15494 * 22 21 20 24 24 C 1.53091 * 109.41676 * 298.84279 * 23 22 21 25 25 H 0.96996 * 120.00214 * 359.97438 * 1 2 3 26 26 H 1.08992 * 110.43832 * 85.36761 * 10 9 7 27 27 H 1.09003 * 110.37886 * 323.10093 * 10 9 7 28 28 H 1.08997 * 111.00549 * 204.82950 * 11 10 9 29 29 H 1.09001 * 111.00100 * 80.97587 * 11 10 9 30 30 H 1.09005 * 110.71728 * 277.13946 * 12 11 10 31 31 H 1.08998 * 110.87435 * 153.93834 * 12 11 10 32 32 H 1.08995 * 109.47487 * 301.90413 * 15 13 9 33 33 H 1.08998 * 109.47017 * 181.89995 * 15 13 9 34 34 H 0.96999 * 120.00513 * 6.03565 * 16 15 13 35 35 H 1.09002 * 109.54048 * 299.99292 * 19 17 16 36 36 H 1.08999 * 109.51970 * 296.83848 * 20 19 17 37 37 H 1.08999 * 109.52392 * 57.03240 * 20 19 17 38 38 H 1.08994 * 109.45685 * 182.44615 * 21 20 19 39 39 H 1.09004 * 109.45725 * 62.44240 * 21 20 19 40 40 H 1.09002 * 109.47993 * 178.85958 * 23 22 21 41 41 H 1.09001 * 109.48813 * 58.83172 * 23 22 21 42 42 H 1.09003 * 109.52513 * 297.70707 * 24 23 22 43 43 H 1.08995 * 109.57573 * 177.54257 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6117 1.9807 -1.3938 5 1 1.3953 2.6829 0.5831 6 1 3.4861 1.4757 0.8109 7 6 2.0103 -1.2022 -0.0005 8 1 1.5205 -2.1086 0.3233 9 7 3.3160 -1.2387 -0.4117 10 6 3.9645 -0.2693 -1.3186 11 6 5.1497 -1.0446 -1.9462 12 6 5.6268 -1.9074 -0.7482 13 6 4.3084 -2.2515 -0.0234 14 1 3.9663 -3.2411 -0.3262 15 6 4.5229 -2.2161 1.4912 16 7 3.2658 -2.5407 2.1699 17 6 3.1822 -2.4515 3.5121 18 8 4.1477 -2.1030 4.1580 19 6 1.8893 -2.7860 4.2104 20 6 1.5095 -4.2405 3.9164 21 6 0.2364 -4.5925 4.6943 22 8 0.4560 -4.3761 6.0896 23 6 0.7693 -3.0236 6.4282 24 6 2.0627 -2.6087 5.7221 25 1 -0.4850 0.8400 0.0004 26 1 4.3286 0.5916 -0.7580 27 1 3.2677 0.0506 -2.0933 28 1 5.9341 -0.3618 -2.2727 29 1 4.8127 -1.6729 -2.7706 30 1 6.2861 -1.3329 -0.0975 31 1 6.1237 -2.8133 -1.0955 32 1 4.8497 -1.2198 1.7887 33 1 5.2839 -2.9459 1.7675 34 1 2.4936 -2.8198 1.6534 35 1 1.1004 -2.1237 3.8538 36 1 1.3311 -4.3614 2.8479 37 1 2.3202 -4.8989 4.2282 38 1 -0.0154 -5.6391 4.5239 39 1 -0.5839 -3.9609 4.3532 40 1 0.9012 -2.9402 7.5070 41 1 -0.0440 -2.3714 6.1099 42 1 2.8846 -3.2343 6.0702 43 1 2.2808 -1.5640 5.9436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027719425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:54 Heat of formation + Delta-G solvation = -70.513631 kcal Electronic energy + Delta-G solvation = -23599.273091 eV Core-core repulsion = 20258.548181 eV Total energy + Delta-G solvation = -3340.724910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.94865 -38.55739 -37.72814 -33.96382 -33.48752 -32.71627 -31.02289 -30.04658 -29.40496 -26.07321 -24.72365 -23.68091 -23.31020 -21.28555 -20.57793 -19.79693 -19.16713 -17.32884 -16.59793 -16.00947 -15.81572 -15.71175 -15.20136 -15.15253 -14.75688 -14.41251 -13.75375 -13.50043 -13.42395 -13.05681 -13.00816 -12.59037 -12.39134 -12.27456 -11.73582 -11.42320 -11.28408 -11.23513 -11.20272 -10.98618 -10.79196 -10.57244 -10.55204 -10.34659 -10.10760 -10.03702 -9.71927 -9.54125 -9.09704 -8.78619 -8.33464 -7.12852 -6.08006 -3.41885 3.17493 3.28430 3.42626 3.46873 3.75714 3.94324 4.45489 4.77784 4.83102 4.90767 4.97677 5.07540 5.14316 5.21204 5.29025 5.34757 5.44143 5.51355 5.59661 5.68990 5.70159 5.77969 5.80729 5.88198 5.91890 6.05228 6.06158 6.11676 6.20404 6.21457 6.28921 6.35497 6.39969 6.59427 6.72285 6.80329 7.11222 7.21237 7.60188 8.12640 8.21629 8.65685 8.83264 9.55569 10.08502 11.07104 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.005693 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.300063 B = 4917.261986 C = 5637.666291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.030 3.970 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.088 0.912 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.130 4.130 12 C -0.123 4.123 13 C 0.145 3.855 14 H 0.049 0.951 15 C 0.114 3.886 16 N -0.700 5.700 17 C 0.517 3.483 18 O -0.563 6.563 19 C -0.111 4.111 20 C -0.144 4.144 21 C 0.062 3.938 22 O -0.386 6.386 23 C 0.061 3.939 24 C -0.132 4.132 25 H 0.264 0.736 26 H 0.024 0.976 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.409 0.591 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.360 -7.149 4.367 9.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.170 4.170 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.202 1.202 7 C -0.368 4.368 8 H 0.105 0.895 9 N -0.328 5.328 10 C -0.013 4.013 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.037 3.963 14 H 0.067 0.933 15 C -0.012 4.012 16 N -0.352 5.352 17 C 0.303 3.697 18 O -0.443 6.443 19 C -0.132 4.132 20 C -0.182 4.182 21 C -0.014 4.014 22 O -0.305 6.305 23 C -0.016 4.016 24 C -0.171 4.171 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.248 0.752 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.766 -6.953 4.957 9.779 hybrid contribution 0.101 1.351 -0.492 1.442 sum 4.866 -5.602 4.465 8.660 Atomic orbital electron populations 1.69802 1.05504 1.26782 1.52669 1.25079 0.95139 0.97488 0.99305 0.86919 0.79298 0.84491 0.77812 1.21207 1.23112 1.20169 1.18362 0.83172 0.94337 1.40923 0.89514 1.44934 1.07399 1.28770 1.51667 1.21994 0.93655 0.92703 0.92991 1.22709 0.98039 0.98775 0.97365 1.22517 0.96542 0.99809 0.97316 1.21326 0.89748 0.94289 0.90895 0.93350 1.21901 0.85477 0.99988 0.93829 1.46057 1.15643 1.67239 1.06253 1.20389 0.89443 0.77235 0.82659 1.90620 1.39022 1.48729 1.65942 1.21352 0.97081 0.98369 0.96441 1.22188 0.99304 0.95169 1.01549 1.22612 0.95916 1.01776 0.81144 1.87892 1.90615 1.27855 1.24131 1.22626 0.95756 0.83306 0.99926 1.21974 0.98586 1.03183 0.93312 0.92611 0.95841 0.92413 0.91704 0.91218 0.91426 0.91298 0.92061 0.93117 0.75207 0.87952 0.90051 0.90822 0.88705 0.92592 0.88824 0.92968 0.90493 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 13.97 55.49 0.78 -25.32 16 2 C 0.03 0.81 5.45 -17.43 -0.09 0.72 16 3 Si 0.88 22.26 24.34 -169.99 -4.14 18.12 16 4 H -0.29 -6.94 6.68 56.52 0.38 -6.56 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 6 H -0.28 -7.08 6.74 56.52 0.38 -6.69 16 7 C -0.24 -6.10 8.87 -15.06 -0.13 -6.23 16 8 H 0.09 2.24 6.55 -52.49 -0.34 1.90 16 9 N -0.60 -13.26 2.87 -162.31 -0.47 -13.73 16 10 C 0.11 2.30 4.75 -2.35 -0.01 2.28 16 11 C -0.13 -2.04 7.09 -24.58 -0.17 -2.22 16 12 C -0.12 -1.84 6.48 -24.90 -0.16 -2.00 16 13 C 0.14 2.60 3.33 -66.95 -0.22 2.38 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 15 C 0.11 2.11 5.18 -4.04 -0.02 2.09 16 16 N -0.70 -13.11 4.71 -60.29 -0.28 -13.39 16 17 C 0.52 9.78 7.16 -10.99 -0.08 9.70 16 18 O -0.56 -12.26 15.96 5.56 0.09 -12.17 16 19 C -0.11 -1.73 2.61 -91.59 -0.24 -1.97 16 20 C -0.14 -1.89 5.31 -26.49 -0.14 -2.03 16 21 C 0.06 0.75 6.85 37.31 0.26 1.00 16 22 O -0.39 -5.21 10.77 -35.23 -0.38 -5.59 16 23 C 0.06 0.74 6.84 37.20 0.25 1.00 16 24 C -0.13 -1.90 4.73 -26.59 -0.13 -2.03 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.02 0.52 5.47 -51.93 -0.28 0.24 16 27 H 0.06 1.27 7.16 -51.93 -0.37 0.90 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.29 8.12 -51.93 -0.42 0.87 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.41 7.63 5.44 -40.82 -0.22 7.41 16 35 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.08 1.02 7.68 -51.93 -0.40 0.62 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.16 8.03 -51.93 -0.42 0.75 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 330.09 15.07 4.97 4.97 Total: -1.00 -30.97 330.09 -7.44 -38.41 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.12 Total: 5.99 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.89 Total: 2.70 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.02 Total: -52.44 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.29 Total: -17.76 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.12 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.97 -7.44 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027719425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.101 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds