Wall clock time and date at job start Tue Mar 31 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99904 * 2 1 4 4 H 1.48494 * 109.47389 * 264.60771 * 3 2 1 5 5 H 1.48503 * 109.46968 * 24.61090 * 3 2 1 6 6 H 1.48502 * 109.46685 * 144.60645 * 3 2 1 7 7 C 1.38812 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00023 * 339.71474 * 7 2 1 9 9 N 1.36941 * 119.99581 * 159.71658 * 7 2 1 10 10 C 1.47741 * 125.82737 * 335.93898 * 9 7 2 11 11 C 1.54910 * 104.84382 * 204.25136 * 10 9 7 12 12 C 1.55155 * 101.57974 * 322.90429 * 11 10 9 13 13 C 1.47023 * 125.64327 * 155.94085 * 9 7 2 14 14 H 1.08997 * 109.88803 * 59.32094 * 13 9 7 15 15 C 1.53008 * 109.88311 * 298.30699 * 13 9 7 16 16 N 1.46502 * 109.46548 * 61.90293 * 15 13 9 17 17 C 1.34772 * 119.99635 * 186.04173 * 16 15 13 18 18 O 1.21282 * 120.00464 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00073 * 180.02562 * 17 16 15 20 20 C 1.53175 * 109.54344 * 60.17514 * 19 17 16 21 21 C 1.53286 * 109.06218 * 176.85375 * 20 19 17 22 22 O 1.42899 * 109.46158 * 302.44847 * 21 20 19 23 23 C 1.42896 * 114.10164 * 61.15494 * 22 21 20 24 24 C 1.53091 * 109.41676 * 298.84279 * 23 22 21 25 25 H 0.96996 * 120.00214 * 359.97438 * 1 2 3 26 26 H 1.08992 * 110.43832 * 85.36761 * 10 9 7 27 27 H 1.09003 * 110.37886 * 323.10093 * 10 9 7 28 28 H 1.08997 * 111.00549 * 204.82950 * 11 10 9 29 29 H 1.09001 * 111.00100 * 80.97587 * 11 10 9 30 30 H 1.09005 * 110.71728 * 277.13946 * 12 11 10 31 31 H 1.08998 * 110.87435 * 153.93834 * 12 11 10 32 32 H 1.08995 * 109.47487 * 301.90413 * 15 13 9 33 33 H 1.08998 * 109.47017 * 181.89995 * 15 13 9 34 34 H 0.96999 * 120.00513 * 6.03565 * 16 15 13 35 35 H 1.09002 * 109.54048 * 299.99292 * 19 17 16 36 36 H 1.08999 * 109.51970 * 296.83848 * 20 19 17 37 37 H 1.08999 * 109.52392 * 57.03240 * 20 19 17 38 38 H 1.08994 * 109.45685 * 182.44615 * 21 20 19 39 39 H 1.09004 * 109.45725 * 62.44240 * 21 20 19 40 40 H 1.09002 * 109.47993 * 178.85958 * 23 22 21 41 41 H 1.09001 * 109.48813 * 58.83172 * 23 22 21 42 42 H 1.09003 * 109.52513 * 297.70707 * 24 23 22 43 43 H 1.08995 * 109.57573 * 177.54257 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6117 1.9807 -1.3938 5 1 1.3953 2.6829 0.5831 6 1 3.4861 1.4757 0.8109 7 6 2.0103 -1.2022 -0.0005 8 1 1.5205 -2.1086 0.3233 9 7 3.3160 -1.2387 -0.4117 10 6 3.9645 -0.2693 -1.3186 11 6 5.1497 -1.0446 -1.9462 12 6 5.6268 -1.9074 -0.7482 13 6 4.3084 -2.2515 -0.0234 14 1 3.9663 -3.2411 -0.3262 15 6 4.5229 -2.2161 1.4912 16 7 3.2658 -2.5407 2.1699 17 6 3.1822 -2.4515 3.5121 18 8 4.1477 -2.1030 4.1580 19 6 1.8893 -2.7860 4.2104 20 6 1.5095 -4.2405 3.9164 21 6 0.2364 -4.5925 4.6943 22 8 0.4560 -4.3761 6.0896 23 6 0.7693 -3.0236 6.4282 24 6 2.0627 -2.6087 5.7221 25 1 -0.4850 0.8400 0.0004 26 1 4.3286 0.5916 -0.7580 27 1 3.2677 0.0506 -2.0933 28 1 5.9341 -0.3618 -2.2727 29 1 4.8127 -1.6729 -2.7706 30 1 6.2861 -1.3329 -0.0975 31 1 6.1237 -2.8133 -1.0955 32 1 4.8497 -1.2198 1.7887 33 1 5.2839 -2.9459 1.7675 34 1 2.4936 -2.8198 1.6534 35 1 1.1004 -2.1237 3.8538 36 1 1.3311 -4.3614 2.8479 37 1 2.3202 -4.8989 4.2282 38 1 -0.0154 -5.6391 4.5239 39 1 -0.5839 -3.9609 4.3532 40 1 0.9012 -2.9402 7.5070 41 1 -0.0440 -2.3714 6.1099 42 1 2.8846 -3.2343 6.0702 43 1 2.2808 -1.5640 5.9436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027719425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:54 Heat of formation + Delta-G solvation = -92.143914 kcal Electronic energy + Delta-G solvation = -23600.211050 eV Core-core repulsion = 20258.548181 eV Total energy + Delta-G solvation = -3341.662870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30248 -39.89005 -39.16081 -35.51494 -34.74403 -34.58005 -32.07683 -31.79581 -30.86412 -27.37009 -26.34529 -25.20849 -24.43958 -22.72105 -21.83010 -21.33813 -20.57590 -19.05009 -18.06142 -17.40908 -17.16337 -16.96589 -16.91408 -16.58981 -15.94538 -15.64657 -15.25926 -15.07072 -14.90354 -14.62585 -14.42865 -14.12412 -13.84919 -13.43691 -13.28926 -13.04637 -12.81860 -12.73750 -12.49260 -12.35561 -12.31720 -12.06939 -11.79105 -11.70440 -11.61969 -11.48056 -11.33111 -10.91273 -10.79185 -10.42365 -9.91009 -9.00514 -8.17930 -5.44638 1.24265 1.35240 1.40825 1.66297 2.32913 2.40859 2.95888 3.09562 3.27911 3.60394 3.73031 3.77252 3.85400 3.98926 4.01178 4.13800 4.26314 4.28345 4.31768 4.44974 4.53384 4.58634 4.65698 4.68542 4.73019 4.77626 4.79162 4.83543 5.00705 5.01417 5.05281 5.07812 5.14237 5.22851 5.27167 5.47038 5.59451 5.71957 6.10620 6.22419 6.65589 6.75983 7.29881 7.54930 8.15584 9.00601 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.005693 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.300063 B = 4917.261986 C = 5637.666291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.023 4.023 3 Si 0.927 3.073 4 H -0.275 1.275 5 H -0.316 1.316 6 H -0.287 1.287 7 C -0.209 4.209 8 H 0.080 0.920 9 N -0.618 5.618 10 C 0.099 3.901 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.141 3.859 14 H 0.063 0.937 15 C 0.116 3.884 16 N -0.702 5.702 17 C 0.511 3.489 18 O -0.595 6.595 19 C -0.110 4.110 20 C -0.137 4.137 21 C 0.062 3.938 22 O -0.396 6.396 23 C 0.064 3.936 24 C -0.128 4.128 25 H 0.259 0.741 26 H 0.009 0.991 27 H 0.039 0.961 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.409 0.591 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.058 0.942 40 H 0.115 0.885 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 -8.730 3.861 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.218 4.218 3 Si 0.758 3.242 4 H -0.201 1.201 5 H -0.245 1.245 6 H -0.214 1.214 7 C -0.338 4.338 8 H 0.097 0.903 9 N -0.344 5.344 10 C -0.025 4.025 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.035 3.965 14 H 0.080 0.920 15 C -0.010 4.010 16 N -0.353 5.353 17 C 0.298 3.702 18 O -0.477 6.477 19 C -0.131 4.131 20 C -0.175 4.175 21 C -0.015 4.015 22 O -0.315 6.315 23 C -0.013 4.013 24 C -0.167 4.167 25 H 0.068 0.932 26 H 0.027 0.973 27 H 0.057 0.943 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.248 0.752 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.076 0.924 40 H 0.133 0.867 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.168 -8.549 4.424 11.433 hybrid contribution -0.240 1.770 -0.340 1.818 sum 5.928 -6.779 4.084 9.888 Atomic orbital electron populations 1.69881 1.06446 1.26660 1.56228 1.25493 0.95530 0.99451 1.01374 0.86223 0.77562 0.82486 0.77880 1.20118 1.24540 1.21362 1.18468 0.84519 0.93509 1.37297 0.90281 1.45148 1.07236 1.29742 1.52282 1.22099 0.95231 0.92853 0.92342 1.22670 0.96376 0.98795 0.97624 1.22561 0.94797 1.01420 0.96500 1.21570 0.90615 0.93591 0.90713 0.91953 1.21888 0.85893 0.98961 0.94222 1.46134 1.15809 1.66928 1.06403 1.20988 0.90197 0.76389 0.82641 1.90595 1.40458 1.50171 1.66506 1.21388 0.94878 0.99941 0.96904 1.22166 1.00030 0.93132 1.02163 1.22739 0.95075 1.03318 0.80337 1.87886 1.90519 1.28252 1.24841 1.22687 0.94579 0.83068 1.00929 1.21947 0.99614 1.02487 0.92621 0.93204 0.97331 0.94309 0.88953 0.89937 0.90997 0.87474 0.95022 0.90884 0.75209 0.88834 0.89537 0.90798 0.86319 0.92354 0.86715 0.92329 0.91407 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.82 13.97 21.65 0.30 -55.51 16 2 C -0.02 -1.28 5.45 84.86 0.46 -0.81 16 3 Si 0.93 46.94 24.34 68.60 1.67 48.61 16 4 H -0.27 -13.22 6.68 99.48 0.66 -12.56 16 5 H -0.32 -16.53 7.11 99.48 0.71 -15.82 16 6 H -0.29 -14.82 6.74 99.48 0.67 -14.15 16 7 C -0.21 -10.58 8.87 84.03 0.75 -9.84 16 8 H 0.08 4.09 6.55 -2.91 -0.02 4.07 16 9 N -0.62 -26.55 2.87 -667.44 -1.92 -28.47 16 10 C 0.10 3.95 4.75 86.79 0.41 4.36 16 11 C -0.12 -3.21 7.09 31.99 0.23 -2.98 16 12 C -0.11 -2.94 6.48 31.78 0.21 -2.73 16 13 C 0.14 4.73 3.33 45.34 0.15 4.88 16 14 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 15 C 0.12 4.15 5.18 86.38 0.45 4.59 16 16 N -0.70 -25.98 4.71 -463.06 -2.18 -28.16 16 17 C 0.51 19.38 7.16 87.66 0.63 20.01 16 18 O -0.60 -26.16 15.96 -3.04 -0.05 -26.21 16 19 C -0.11 -3.41 2.61 -11.42 -0.03 -3.44 16 20 C -0.14 -3.43 5.31 30.75 0.16 -3.27 16 21 C 0.06 1.37 6.85 72.08 0.49 1.86 16 22 O -0.40 -9.94 10.77 -148.98 -1.60 -11.55 16 23 C 0.06 1.49 6.84 72.01 0.49 1.98 16 24 C -0.13 -3.66 4.73 30.69 0.15 -3.51 16 25 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 26 H 0.01 0.39 5.47 -2.39 -0.01 0.37 16 27 H 0.04 1.67 7.16 -2.39 -0.02 1.65 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 1.82 7.85 -2.38 -0.02 1.80 16 31 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.03 1.32 8.12 -2.39 -0.02 1.30 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.41 15.08 5.44 -92.71 -0.50 14.58 16 35 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.09 2.07 7.68 -2.39 -0.02 2.05 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 2.04 8.03 -2.39 -0.02 2.02 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -67.85 330.09 1.17 -66.68 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.41 Total: 23.52 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 4.54 Total: 11.10 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -3.80 Total: -112.15 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.65 Total: -37.76 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.67 Total: 48.61 kcal Total: -67.85 1.17 -66.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027719425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.462 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds