Wall clock time and date at job start Tue Mar 31 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00016 * 2 1 4 4 H 1.48500 * 109.47099 * 239.99838 * 3 2 1 5 5 H 1.48494 * 109.46820 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46846 * 119.99646 * 3 2 1 7 7 C 1.38811 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00359 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99916 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.64672 * 345.90155 * 9 7 2 11 11 C 1.54915 * 104.82991 * 204.09421 * 10 9 7 12 12 C 1.55157 * 101.58084 * 322.99033 * 11 10 9 13 13 C 1.47016 * 125.65051 * 165.85993 * 9 7 2 14 14 H 1.09004 * 109.88091 * 59.40467 * 13 9 7 15 15 C 1.53001 * 109.88469 * 298.39253 * 13 9 7 16 16 N 1.46497 * 109.47352 * 174.60434 * 15 13 9 17 17 C 1.34776 * 119.99862 * 176.21216 * 16 15 13 18 18 O 1.21273 * 120.00312 * 0.27378 * 17 16 15 19 19 C 1.50703 * 119.99913 * 180.27442 * 17 16 15 20 20 H 1.08995 * 109.52186 * 300.12495 * 19 17 16 21 21 C 1.53171 * 109.52212 * 179.97438 * 19 17 16 22 22 C 1.53183 * 109.03962 * 183.11209 * 21 19 17 23 23 C 1.53095 * 109.15555 * 56.98317 * 22 21 19 24 24 O 1.42898 * 109.41732 * 302.38904 * 23 22 21 25 25 C 1.42902 * 114.09542 * 61.16303 * 24 23 22 26 26 H 0.96997 * 120.00113 * 0.02562 * 1 2 3 27 27 H 1.09005 * 110.36320 * 322.92747 * 10 9 7 28 28 H 1.08994 * 110.36655 * 85.25038 * 10 9 7 29 29 H 1.08998 * 111.00144 * 81.06245 * 11 10 9 30 30 H 1.08996 * 110.99864 * 204.87486 * 11 10 9 31 31 H 1.09001 * 110.71617 * 277.13634 * 12 11 10 32 32 H 1.09002 * 110.71725 * 153.86889 * 12 11 10 33 33 H 1.09006 * 109.46812 * 54.60599 * 15 13 9 34 34 H 1.09000 * 109.47074 * 294.60351 * 15 13 9 35 35 H 0.97006 * 120.00188 * 356.48278 * 16 15 13 36 36 H 1.09002 * 109.54993 * 302.98236 * 21 19 17 37 37 H 1.09000 * 109.54413 * 63.16344 * 21 19 17 38 38 H 1.08992 * 109.52371 * 176.88569 * 22 21 19 39 39 H 1.09000 * 109.51994 * 297.01882 * 22 21 19 40 40 H 1.08996 * 109.48631 * 62.37868 * 23 22 21 41 41 H 1.09007 * 109.47616 * 182.40111 * 23 22 21 42 42 H 1.09009 * 109.48032 * 178.86053 * 25 24 23 43 43 H 1.08997 * 109.48282 * 58.82647 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1104 -2.5512 0.2919 11 6 -0.2540 -4.0178 0.7695 12 6 0.7655 -4.7450 -0.1466 13 6 1.9006 -3.7094 -0.2908 14 1 2.6992 -3.9304 0.4173 15 6 2.4496 -3.7347 -1.7187 16 7 3.1337 -5.0082 -1.9564 17 6 3.6332 -5.2872 -3.1766 18 8 3.5208 -4.4821 -4.0766 19 6 4.3314 -6.5999 -3.4228 20 1 5.1918 -6.6849 -2.7592 21 6 4.7997 -6.6652 -4.8797 22 6 5.4380 -8.0334 -5.1386 23 6 4.4251 -9.1316 -4.8041 24 8 4.0077 -8.9947 -3.4444 25 6 3.3614 -7.7535 -3.1547 26 1 -0.4850 0.8400 -0.0004 27 1 -0.4180 -1.8637 1.0799 28 1 -0.7013 -2.3859 -0.6089 29 1 0.0242 -4.1160 1.8188 30 1 -1.2655 -4.3867 0.5995 31 1 0.3215 -4.9681 -1.1167 32 1 1.1315 -5.6546 0.3296 33 1 3.1541 -2.9135 -1.8516 34 1 1.6275 -3.6263 -2.4260 35 1 3.2236 -5.6522 -1.2366 36 1 3.9459 -6.5296 -5.5437 37 1 5.5324 -5.8792 -5.0628 38 1 5.7243 -8.1092 -6.1876 39 1 6.3215 -8.1478 -4.5106 40 1 3.5600 -9.0407 -5.4609 41 1 4.8880 -10.1083 -4.9458 42 1 3.0579 -7.7373 -2.1078 43 1 2.4824 -7.6445 -3.7898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027779568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:09 Heat of formation + Delta-G solvation = -73.891744 kcal Electronic energy + Delta-G solvation = -22850.163775 eV Core-core repulsion = 19509.292379 eV Total energy + Delta-G solvation = -3340.871396 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.30208 -38.67045 -37.57864 -34.34441 -33.73421 -32.52066 -31.67470 -29.62691 -28.60192 -25.45495 -24.97179 -24.50483 -23.42845 -21.02736 -20.28470 -19.97174 -19.39135 -17.43197 -16.63970 -16.50724 -16.13338 -15.73607 -15.24867 -14.88762 -14.52767 -14.39186 -13.84405 -13.83375 -13.71487 -13.10821 -12.89763 -12.67550 -12.12444 -11.92217 -11.86570 -11.64632 -11.35205 -11.33113 -11.16489 -10.96170 -10.78722 -10.64870 -10.26194 -10.14343 -9.99317 -9.87531 -9.83189 -9.72611 -9.48288 -8.70099 -8.58448 -6.86102 -5.78003 -3.14840 2.79264 3.33269 3.40579 3.44655 3.45613 3.63984 4.42611 4.47273 4.61653 4.63949 4.69283 4.90143 5.08168 5.14107 5.30690 5.34163 5.38557 5.45121 5.47839 5.54753 5.60739 5.61797 5.71583 5.79276 5.91945 6.03929 6.08895 6.11884 6.22414 6.43957 6.52611 6.60854 6.68866 6.78975 6.86270 7.04050 7.50236 7.58785 7.75261 7.77490 8.24091 8.44595 9.15898 9.76491 10.43550 11.33766 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025012 B = 0.003843 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.215059 B = 7283.327102 C = 8140.958099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.108 3.892 16 N -0.722 5.722 17 C 0.512 3.488 18 O -0.539 6.539 19 C -0.144 4.144 20 H 0.104 0.896 21 C -0.103 4.103 22 C -0.156 4.156 23 C 0.057 3.943 24 O -0.378 6.378 25 C 0.072 3.928 26 H 0.254 0.746 27 H 0.073 0.927 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.395 0.605 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 -18.047 -5.292 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.017 4.017 16 N -0.373 5.373 17 C 0.297 3.703 18 O -0.416 6.416 19 C -0.166 4.166 20 H 0.122 0.878 21 C -0.141 4.141 22 C -0.194 4.194 23 C -0.020 4.020 24 O -0.297 6.297 25 C -0.005 4.005 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.443 -17.311 -5.776 19.353 hybrid contribution 0.516 0.921 0.034 1.056 sum 6.959 -16.390 -5.742 18.709 Atomic orbital electron populations 1.69924 1.05025 1.25454 1.55767 1.24906 0.95678 0.97867 1.01333 0.86223 0.78604 0.83057 0.78035 1.20957 1.21526 1.21042 1.18937 0.90373 0.82210 1.44860 0.90709 1.44487 1.06070 1.00876 1.79906 1.21470 0.84702 0.90253 0.98866 1.23008 0.97513 0.99596 0.98624 1.22611 0.97080 0.96976 0.99741 1.21131 0.94468 0.88084 0.91992 0.94509 1.22260 0.96474 0.83560 0.99430 1.46204 1.58093 1.21274 1.11745 1.20356 0.79034 0.88112 0.82816 1.90711 1.57864 1.49623 1.43426 1.22021 1.00487 0.93787 1.00279 0.87816 1.21399 1.01621 0.96940 0.94114 1.22228 0.99444 0.95252 1.02444 1.22636 0.96960 0.99063 0.83326 1.87950 1.77821 1.36029 1.27858 1.22519 0.93491 0.82439 1.02054 0.93525 0.90849 0.95662 0.92286 0.92329 0.91853 0.92360 0.91406 0.91746 0.77132 0.90901 0.90649 0.90521 0.90941 0.92998 0.88781 0.88228 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.55 55.49 0.59 -26.03 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.44 9.71 -15.06 -0.15 -6.59 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -14.55 3.13 -162.57 -0.51 -15.06 16 10 C 0.17 4.07 5.42 -2.52 -0.01 4.06 16 11 C -0.15 -2.69 7.09 -24.58 -0.17 -2.86 16 12 C -0.13 -2.05 6.23 -24.90 -0.16 -2.21 16 13 C 0.15 2.95 3.19 -66.96 -0.21 2.74 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 15 C 0.11 2.06 5.11 -4.04 -0.02 2.04 16 16 N -0.72 -10.50 5.29 -60.29 -0.32 -10.82 16 17 C 0.51 7.74 7.16 -10.98 -0.08 7.66 16 18 O -0.54 -10.60 15.97 5.56 0.09 -10.51 16 19 C -0.14 -1.59 2.73 -91.63 -0.25 -1.84 16 20 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 21 C -0.10 -1.10 4.62 -26.55 -0.12 -1.23 16 22 C -0.16 -1.26 6.14 -26.59 -0.16 -1.42 16 23 C 0.06 0.46 6.84 37.21 0.25 0.72 16 24 O -0.38 -3.90 10.77 -35.23 -0.38 -4.28 16 25 C 0.07 0.71 6.01 37.21 0.22 0.94 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.07 1.94 6.89 -51.93 -0.36 1.58 16 28 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.02 7.76 -51.93 -0.40 0.62 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.49 7.84 -51.93 -0.41 1.09 16 34 H 0.06 1.37 8.01 -51.93 -0.42 0.96 16 35 H 0.40 4.49 7.89 -40.82 -0.32 4.17 16 36 H 0.07 0.86 8.03 -51.93 -0.42 0.44 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.84 7.66 -51.92 -0.40 0.44 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -32.01 340.10 -8.72 -40.73 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.34 Total: 1.88 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.95 Total: 1.89 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.24 Total: -51.90 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.29 Total: -14.79 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.01 -8.72 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027779568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.166 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds