Wall clock time and date at job start Tue Mar 31 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00016 * 2 1 4 4 H 1.48500 * 109.47099 * 239.99838 * 3 2 1 5 5 H 1.48494 * 109.46820 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46846 * 119.99646 * 3 2 1 7 7 C 1.38811 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00359 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99916 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.64672 * 345.90155 * 9 7 2 11 11 C 1.54915 * 104.82991 * 204.09421 * 10 9 7 12 12 C 1.55157 * 101.58084 * 322.99033 * 11 10 9 13 13 C 1.47016 * 125.65051 * 165.85993 * 9 7 2 14 14 H 1.09004 * 109.88091 * 59.40467 * 13 9 7 15 15 C 1.53001 * 109.88469 * 298.39253 * 13 9 7 16 16 N 1.46497 * 109.47352 * 174.60434 * 15 13 9 17 17 C 1.34776 * 119.99862 * 176.21216 * 16 15 13 18 18 O 1.21273 * 120.00312 * 0.27378 * 17 16 15 19 19 C 1.50703 * 119.99913 * 180.27442 * 17 16 15 20 20 H 1.08995 * 109.52186 * 300.12495 * 19 17 16 21 21 C 1.53171 * 109.52212 * 179.97438 * 19 17 16 22 22 C 1.53183 * 109.03962 * 183.11209 * 21 19 17 23 23 C 1.53095 * 109.15555 * 56.98317 * 22 21 19 24 24 O 1.42898 * 109.41732 * 302.38904 * 23 22 21 25 25 C 1.42902 * 114.09542 * 61.16303 * 24 23 22 26 26 H 0.96997 * 120.00113 * 0.02562 * 1 2 3 27 27 H 1.09005 * 110.36320 * 322.92747 * 10 9 7 28 28 H 1.08994 * 110.36655 * 85.25038 * 10 9 7 29 29 H 1.08998 * 111.00144 * 81.06245 * 11 10 9 30 30 H 1.08996 * 110.99864 * 204.87486 * 11 10 9 31 31 H 1.09001 * 110.71617 * 277.13634 * 12 11 10 32 32 H 1.09002 * 110.71725 * 153.86889 * 12 11 10 33 33 H 1.09006 * 109.46812 * 54.60599 * 15 13 9 34 34 H 1.09000 * 109.47074 * 294.60351 * 15 13 9 35 35 H 0.97006 * 120.00188 * 356.48278 * 16 15 13 36 36 H 1.09002 * 109.54993 * 302.98236 * 21 19 17 37 37 H 1.09000 * 109.54413 * 63.16344 * 21 19 17 38 38 H 1.08992 * 109.52371 * 176.88569 * 22 21 19 39 39 H 1.09000 * 109.51994 * 297.01882 * 22 21 19 40 40 H 1.08996 * 109.48631 * 62.37868 * 23 22 21 41 41 H 1.09007 * 109.47616 * 182.40111 * 23 22 21 42 42 H 1.09009 * 109.48032 * 178.86053 * 25 24 23 43 43 H 1.08997 * 109.48282 * 58.82647 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1104 -2.5512 0.2919 11 6 -0.2540 -4.0178 0.7695 12 6 0.7655 -4.7450 -0.1466 13 6 1.9006 -3.7094 -0.2908 14 1 2.6992 -3.9304 0.4173 15 6 2.4496 -3.7347 -1.7187 16 7 3.1337 -5.0082 -1.9564 17 6 3.6332 -5.2872 -3.1766 18 8 3.5208 -4.4821 -4.0766 19 6 4.3314 -6.5999 -3.4228 20 1 5.1918 -6.6849 -2.7592 21 6 4.7997 -6.6652 -4.8797 22 6 5.4380 -8.0334 -5.1386 23 6 4.4251 -9.1316 -4.8041 24 8 4.0077 -8.9947 -3.4444 25 6 3.3614 -7.7535 -3.1547 26 1 -0.4850 0.8400 -0.0004 27 1 -0.4180 -1.8637 1.0799 28 1 -0.7013 -2.3859 -0.6089 29 1 0.0242 -4.1160 1.8188 30 1 -1.2655 -4.3867 0.5995 31 1 0.3215 -4.9681 -1.1167 32 1 1.1315 -5.6546 0.3296 33 1 3.1541 -2.9135 -1.8516 34 1 1.6275 -3.6263 -2.4260 35 1 3.2236 -5.6522 -1.2366 36 1 3.9459 -6.5296 -5.5437 37 1 5.5324 -5.8792 -5.0628 38 1 5.7243 -8.1092 -6.1876 39 1 6.3215 -8.1478 -4.5106 40 1 3.5600 -9.0407 -5.4609 41 1 4.8880 -10.1083 -4.9458 42 1 3.0579 -7.7373 -2.1078 43 1 2.4824 -7.6445 -3.7898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027779568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:09 Heat of formation + Delta-G solvation = -96.248807 kcal Electronic energy + Delta-G solvation = -22851.133250 eV Core-core repulsion = 19509.292379 eV Total energy + Delta-G solvation = -3341.840871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.38801 -39.78611 -39.09537 -35.82289 -34.60713 -34.42183 -32.55052 -31.37797 -30.19061 -26.84057 -26.20936 -25.76261 -24.69904 -22.15579 -21.82184 -21.30976 -20.75756 -18.92230 -18.16885 -17.46161 -17.30428 -16.86929 -16.58430 -16.22010 -15.93162 -15.72494 -15.44565 -15.04933 -14.65547 -14.45812 -13.97824 -13.94048 -13.65821 -13.48712 -13.39849 -12.99668 -12.88043 -12.67293 -12.57157 -12.14271 -12.07282 -11.90129 -11.86858 -11.72491 -11.48737 -11.40946 -11.36832 -10.93496 -10.69043 -10.49441 -10.09377 -8.87482 -7.89721 -5.27371 1.42906 1.46298 1.51910 1.56798 2.12136 2.48559 2.89747 3.29683 3.55470 3.68635 3.78190 3.83268 3.95382 3.98929 3.99784 4.15652 4.24935 4.30123 4.43958 4.46114 4.54699 4.63384 4.72668 4.73134 4.81570 4.92429 4.96949 5.00373 5.04990 5.12166 5.14833 5.22067 5.30856 5.36459 5.45962 5.56987 5.66161 5.77455 6.16567 6.21960 6.56013 7.07730 7.24533 7.75211 8.40722 9.20825 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025012 B = 0.003843 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.215059 B = 7283.327102 C = 8140.958099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.612 5.612 10 C 0.173 3.827 11 C -0.134 4.134 12 C -0.112 4.112 13 C 0.148 3.852 14 H 0.053 0.947 15 C 0.128 3.872 16 N -0.705 5.705 17 C 0.511 3.489 18 O -0.590 6.590 19 C -0.132 4.132 20 H 0.124 0.876 21 C -0.106 4.106 22 C -0.147 4.147 23 C 0.051 3.949 24 O -0.386 6.386 25 C 0.075 3.925 26 H 0.248 0.752 27 H 0.036 0.964 28 H -0.010 1.010 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.030 0.970 34 H 0.035 0.965 35 H 0.416 0.584 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.926 -21.115 -4.647 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.337 5.337 10 C 0.048 3.952 11 C -0.172 4.172 12 C -0.150 4.150 13 C 0.040 3.960 14 H 0.070 0.930 15 C 0.002 3.998 16 N -0.358 5.358 17 C 0.299 3.701 18 O -0.470 6.470 19 C -0.153 4.153 20 H 0.142 0.858 21 C -0.144 4.144 22 C -0.185 4.185 23 C -0.026 4.026 24 O -0.305 6.305 25 C -0.002 4.002 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.008 0.992 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.254 0.746 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.810 -20.450 -5.105 22.478 hybrid contribution 0.142 1.833 -0.215 1.851 sum 7.952 -18.617 -5.320 20.931 Atomic orbital electron populations 1.70132 1.06280 1.25478 1.57448 1.25677 0.96511 1.00998 1.02107 0.85263 0.77350 0.79236 0.78175 1.20955 1.21874 1.19832 1.19264 0.90738 0.83689 1.43440 0.90615 1.44762 1.06549 1.02070 1.80277 1.21285 0.84013 0.93648 0.96292 1.22873 0.99659 0.95213 0.99453 1.22611 0.95005 0.97406 0.99981 1.21357 0.96084 0.86686 0.91835 0.92956 1.21685 0.94837 0.84636 0.98676 1.45913 1.57308 1.19973 1.12582 1.21127 0.78100 0.89019 0.81904 1.90696 1.59696 1.51609 1.45022 1.22010 1.00925 0.91502 1.00901 0.85816 1.21420 1.00886 0.98436 0.93683 1.22190 0.99387 0.93250 1.03655 1.22837 0.97161 1.00079 0.82483 1.87950 1.77837 1.35706 1.28990 1.22541 0.92688 0.81805 1.03174 0.94291 0.94508 0.99185 0.91069 0.89914 0.91632 0.87426 0.95117 0.94603 0.74646 0.92528 0.91982 0.88998 0.90200 0.92840 0.86596 0.86246 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.33 10.55 21.65 0.23 -57.10 16 2 C -0.06 -3.40 5.47 84.86 0.46 -2.94 16 3 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.24 -13.57 9.71 84.03 0.82 -12.75 16 8 H 0.08 4.11 7.83 -2.92 -0.02 4.09 16 9 N -0.61 -30.70 3.13 -668.25 -2.09 -32.79 16 10 C 0.17 8.38 5.42 86.86 0.47 8.85 16 11 C -0.13 -4.53 7.09 31.99 0.23 -4.30 16 12 C -0.11 -3.28 6.23 31.78 0.20 -3.08 16 13 C 0.15 5.55 3.19 45.34 0.14 5.69 16 14 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 15 C 0.13 4.92 5.11 86.38 0.44 5.36 16 16 N -0.71 -19.37 5.29 -463.06 -2.45 -21.82 16 17 C 0.51 15.04 7.16 87.66 0.63 15.66 16 18 O -0.59 -23.72 15.97 -3.01 -0.05 -23.77 16 19 C -0.13 -2.64 2.73 -11.45 -0.03 -2.67 16 20 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 21 C -0.11 -2.16 4.62 30.71 0.14 -2.01 16 22 C -0.15 -2.00 6.14 30.69 0.19 -1.81 16 23 C 0.05 0.67 6.84 72.01 0.49 1.16 16 24 O -0.39 -6.66 10.77 -148.98 -1.60 -8.27 16 25 C 0.08 1.26 6.01 72.01 0.43 1.70 16 26 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 27 H 0.04 2.02 6.89 -2.38 -0.02 2.00 16 28 H -0.01 -0.54 8.07 -2.39 -0.02 -0.56 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.06 1.92 7.76 -2.39 -0.02 1.90 16 32 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.03 1.39 7.84 -2.38 -0.02 1.38 16 34 H 0.04 1.57 8.01 -2.39 -0.02 1.55 16 35 H 0.42 7.98 7.89 -92.70 -0.73 7.25 16 36 H 0.06 1.32 8.03 -2.39 -0.02 1.30 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.12 1.51 7.66 -2.38 -0.02 1.49 16 43 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -74.06 340.10 0.93 -73.13 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.25 Total: 13.13 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 4.61 Total: 8.86 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -4.31 Total: -111.70 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.65 Total: -32.04 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -74.06 0.93 -73.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027779568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.118 kcal (2) G-P(sol) polarization free energy of solvation -74.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds