Wall clock time and date at job start Tue Mar 31 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48495 * 109.47229 * 239.99624 * 3 2 1 5 5 H 1.48501 * 109.47156 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47134 * 119.99295 * 3 2 1 7 7 C 1.38810 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99940 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00146 * 0.02562 * 7 2 1 10 10 C 1.47745 * 125.82113 * 14.23687 * 9 7 2 11 11 C 1.54906 * 104.83973 * 155.82536 * 10 9 7 12 12 C 1.55161 * 101.58244 * 37.09343 * 11 10 9 13 13 C 1.47022 * 125.64908 * 194.32403 * 9 7 2 14 14 H 1.09001 * 109.88522 * 300.60221 * 13 9 7 15 15 C 1.53000 * 109.88180 * 61.61095 * 13 9 7 16 16 N 1.46501 * 109.46880 * 182.57452 * 15 13 9 17 17 C 1.34776 * 119.99844 * 185.13524 * 16 15 13 18 18 O 1.21285 * 120.00110 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00025 * 180.02562 * 17 16 15 20 20 H 1.08994 * 109.51953 * 60.12561 * 19 17 16 21 21 C 1.53178 * 109.57330 * 180.28359 * 19 17 16 22 22 C 1.53179 * 109.03826 * 176.91713 * 21 19 17 23 23 C 1.53094 * 109.16041 * 303.01593 * 22 21 19 24 24 O 1.42906 * 109.41222 * 57.60723 * 23 22 21 25 25 C 1.42904 * 114.09936 * 298.84230 * 24 23 22 26 26 H 0.96995 * 119.99984 * 0.02562 * 1 2 3 27 27 H 1.09002 * 110.29332 * 37.02140 * 10 9 7 28 28 H 1.08999 * 110.52880 * 274.75027 * 10 9 7 29 29 H 1.09001 * 111.00570 * 279.01666 * 11 10 9 30 30 H 1.09006 * 111.00393 * 155.16508 * 11 10 9 31 31 H 1.08997 * 110.71587 * 206.13170 * 12 11 10 32 32 H 1.09003 * 110.71868 * 82.85934 * 12 11 10 33 33 H 1.09001 * 109.47261 * 62.57350 * 15 13 9 34 34 H 1.09002 * 109.47228 * 302.57313 * 15 13 9 35 35 H 0.96998 * 120.00475 * 5.13815 * 16 15 13 36 36 H 1.09004 * 109.54237 * 296.78534 * 21 19 17 37 37 H 1.08998 * 109.54842 * 56.95856 * 21 19 17 38 38 H 1.08998 * 109.52223 * 183.11154 * 22 21 19 39 39 H 1.09000 * 109.52094 * 62.91981 * 22 21 19 40 40 H 1.08992 * 109.48255 * 297.62898 * 23 22 21 41 41 H 1.09003 * 109.47849 * 177.58715 * 23 22 21 42 42 H 1.08998 * 109.47766 * 181.14082 * 25 24 23 43 43 H 1.09001 * 109.47581 * 301.16140 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1123 -2.5564 -0.2946 11 6 -0.2503 -4.0239 -0.7712 12 6 0.7678 -4.7475 0.1494 13 6 1.8995 -3.7088 0.2966 14 1 2.7008 -3.9313 -0.4081 15 6 2.4434 -3.7311 1.7265 16 7 3.0677 -5.0298 1.9913 17 6 3.5265 -5.3178 3.2254 18 8 3.4230 -4.5016 4.1166 19 6 4.1691 -6.6534 3.4977 20 1 5.0443 -6.7734 2.8592 21 6 4.5936 -6.7285 4.9676 22 6 5.1745 -8.1176 5.2495 23 6 4.1324 -9.1803 4.8907 24 8 3.7586 -9.0348 3.5191 25 6 3.1660 -7.7725 3.2066 26 1 -0.4850 0.8400 -0.0004 27 1 -0.4189 -1.8706 -1.0844 28 1 -0.7086 -2.3913 0.6028 29 1 0.0320 -4.1224 -1.8194 30 1 -1.2613 -4.3956 -0.6038 31 1 1.1378 -5.6566 -0.3246 32 1 0.3208 -4.9707 1.1182 33 1 1.6254 -3.5712 2.4290 34 1 3.1845 -2.9407 1.8457 35 1 3.1508 -5.6823 1.2785 36 1 5.3499 -5.9695 5.1679 37 1 3.7273 -6.5576 5.6066 38 1 5.4283 -8.1986 6.3065 39 1 6.0699 -8.2672 4.6464 40 1 3.2531 -9.0550 5.5224 41 1 4.5556 -10.1723 5.0489 42 1 2.8929 -7.7505 2.1516 43 1 2.2738 -7.6290 3.8161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027779569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:11 Heat of formation + Delta-G solvation = -96.288732 kcal Electronic energy + Delta-G solvation = -22860.431925 eV Core-core repulsion = 19518.589323 eV Total energy + Delta-G solvation = -3341.842602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.38716 -39.78113 -39.08135 -35.81806 -34.60588 -34.41662 -32.55092 -31.38176 -30.17652 -26.84457 -26.20890 -25.76021 -24.70545 -22.16798 -21.81359 -21.28537 -20.76217 -18.92377 -18.16737 -17.45661 -17.29898 -16.86995 -16.58227 -16.22189 -15.93876 -15.72443 -15.44868 -15.03866 -14.65817 -14.46389 -13.97178 -13.93690 -13.65896 -13.48453 -13.41335 -12.98377 -12.88045 -12.66903 -12.56934 -12.14313 -12.07319 -11.89698 -11.86514 -11.72490 -11.49157 -11.40696 -11.36792 -10.93643 -10.69292 -10.49351 -10.09297 -8.87505 -7.89894 -5.27346 1.43022 1.46326 1.51967 1.56805 2.12055 2.48611 2.89753 3.29831 3.55521 3.68481 3.78139 3.83206 3.95276 3.98481 3.99822 4.15783 4.24956 4.30135 4.44113 4.46298 4.54429 4.63470 4.72693 4.73315 4.81663 4.92433 4.96934 5.00122 5.04934 5.12215 5.14674 5.21532 5.31018 5.36966 5.45762 5.56766 5.65671 5.77052 6.16599 6.21561 6.56034 7.07172 7.24589 7.74697 8.40993 9.21002 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025302 B = 0.003839 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.373772 B = 7291.532554 C = 8133.885344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.612 5.612 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.112 4.112 13 C 0.147 3.853 14 H 0.052 0.948 15 C 0.129 3.871 16 N -0.705 5.705 17 C 0.511 3.489 18 O -0.590 6.590 19 C -0.132 4.132 20 H 0.124 0.876 21 C -0.106 4.106 22 C -0.147 4.147 23 C 0.051 3.949 24 O -0.386 6.386 25 C 0.075 3.925 26 H 0.248 0.752 27 H 0.036 0.964 28 H -0.009 1.009 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.031 0.969 35 H 0.416 0.584 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.513 -21.254 4.817 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.337 5.337 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.150 4.150 13 C 0.040 3.960 14 H 0.070 0.930 15 C 0.002 3.998 16 N -0.358 5.358 17 C 0.298 3.702 18 O -0.470 6.470 19 C -0.153 4.153 20 H 0.142 0.858 21 C -0.144 4.144 22 C -0.185 4.185 23 C -0.026 4.026 24 O -0.305 6.305 25 C -0.002 4.002 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.009 0.991 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.254 0.746 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.401 -20.582 5.270 22.498 hybrid contribution 0.155 1.840 0.211 1.858 sum 7.556 -18.742 5.481 20.938 Atomic orbital electron populations 1.70126 1.06294 1.25485 1.57448 1.25678 0.96509 1.01004 1.02119 0.85261 0.77347 0.79225 0.78182 1.19839 1.21893 1.20929 1.19267 0.90730 0.83666 1.43439 0.90582 1.44828 1.06620 1.02100 1.80128 1.21331 0.84002 0.93647 0.96287 1.22867 0.99683 0.95170 0.99442 1.22607 0.95054 0.97401 0.99940 1.21354 0.96122 0.86748 0.91781 0.92986 1.21677 0.95546 0.84033 0.98543 1.45909 1.60001 1.18006 1.11841 1.21131 0.77602 0.89485 0.81932 1.90700 1.58400 1.51826 1.46114 1.22007 1.01408 0.91225 1.00687 0.85791 1.21420 1.01193 0.98303 0.93509 1.22191 0.99535 0.93203 1.03546 1.22839 0.97273 1.00343 0.82115 1.87951 1.80723 1.33865 1.27948 1.22540 0.93033 0.81656 1.02997 0.94295 0.94566 0.99130 0.91049 0.89890 0.87394 0.91638 0.94694 0.95097 0.74640 0.91971 0.92539 0.88991 0.90184 0.92854 0.86595 0.86243 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.37 10.58 21.65 0.23 -57.14 16 2 C -0.06 -3.41 5.47 84.86 0.46 -2.95 16 3 Si 0.97 46.60 29.55 68.60 2.03 48.62 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 7 C -0.24 -13.55 9.76 84.03 0.82 -12.73 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.61 -30.72 3.14 -667.46 -2.09 -32.81 16 10 C 0.17 8.35 5.43 86.79 0.47 8.82 16 11 C -0.13 -4.51 7.08 31.99 0.23 -4.28 16 12 C -0.11 -3.27 6.10 31.78 0.19 -3.08 16 13 C 0.15 5.53 3.21 45.34 0.15 5.68 16 14 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 15 C 0.13 4.94 5.07 86.38 0.44 5.37 16 16 N -0.71 -19.33 5.23 -463.05 -2.42 -21.76 16 17 C 0.51 15.02 7.16 87.66 0.63 15.65 16 18 O -0.59 -23.74 15.97 -3.05 -0.05 -23.79 16 19 C -0.13 -2.63 2.73 -11.45 -0.03 -2.66 16 20 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 21 C -0.11 -2.15 4.62 30.71 0.14 -2.01 16 22 C -0.15 -1.99 6.14 30.69 0.19 -1.80 16 23 C 0.05 0.67 6.84 72.01 0.49 1.16 16 24 O -0.39 -6.66 10.77 -148.98 -1.60 -8.26 16 25 C 0.08 1.26 6.00 72.01 0.43 1.69 16 26 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 27 H 0.04 1.99 6.92 -2.39 -0.02 1.97 16 28 H -0.01 -0.51 8.08 -2.39 -0.02 -0.53 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.11 2.17 8.14 -2.39 -0.02 2.16 16 32 H 0.06 1.92 7.81 -2.39 -0.02 1.90 16 33 H 0.03 1.55 8.08 -2.39 -0.02 1.53 16 34 H 0.03 1.39 7.91 -2.39 -0.02 1.37 16 35 H 0.42 7.95 7.80 -92.71 -0.72 7.23 16 36 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.06 1.32 8.03 -2.39 -0.02 1.30 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.12 1.51 7.64 -2.39 -0.02 1.49 16 43 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -74.15 340.15 0.96 -73.18 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.26 Total: 13.07 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 4.61 Total: 8.87 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -4.29 Total: -111.71 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.65 Total: -32.05 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -74.15 0.96 -73.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027779569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.104 kcal (2) G-P(sol) polarization free energy of solvation -74.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds