Wall clock time and date at job start Tue Mar 31 2020 06:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99751 * 2 1 4 4 H 1.48506 * 109.46927 * 239.99814 * 3 2 1 5 5 H 1.48498 * 109.47316 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46970 * 120.00122 * 3 2 1 7 7 C 1.38809 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00100 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.64633 * 14.70544 * 9 7 2 11 11 C 1.54909 * 104.82793 * 155.83379 * 10 9 7 12 12 C 1.55156 * 101.58592 * 37.01535 * 11 10 9 13 13 C 1.47021 * 125.64929 * 194.40049 * 9 7 2 14 14 H 1.08997 * 109.88463 * 300.51303 * 13 9 7 15 15 C 1.53004 * 109.88288 * 61.67988 * 13 9 7 16 16 N 1.46503 * 109.46758 * 183.73941 * 15 13 9 17 17 C 1.34773 * 119.99727 * 185.65821 * 16 15 13 18 18 O 1.21282 * 119.99950 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99995 * 180.02562 * 17 16 15 20 20 H 1.08997 * 109.47912 * 54.99819 * 19 17 16 21 21 C 1.53085 * 109.47914 * 294.97602 * 19 17 16 22 22 C 1.53182 * 109.16328 * 182.42210 * 21 19 17 23 23 C 1.53169 * 109.04829 * 56.96310 * 22 21 19 24 24 C 1.53093 * 109.16241 * 303.03122 * 23 22 21 25 25 O 1.42897 * 109.42021 * 57.60327 * 24 23 22 26 26 H 0.97003 * 119.99953 * 359.97438 * 1 2 3 27 27 H 1.08994 * 110.36834 * 274.67427 * 10 9 7 28 28 H 1.08994 * 110.36572 * 36.89019 * 10 9 7 29 29 H 1.09002 * 111.00051 * 155.08687 * 11 10 9 30 30 H 1.08998 * 111.00497 * 278.89694 * 11 10 9 31 31 H 1.08999 * 110.72175 * 82.85365 * 12 11 10 32 32 H 1.08996 * 110.72144 * 206.13979 * 12 11 10 33 33 H 1.08999 * 109.46997 * 303.73756 * 15 13 9 34 34 H 1.08998 * 109.47010 * 63.73913 * 15 13 9 35 35 H 0.96998 * 120.00246 * 5.66079 * 16 15 13 36 36 H 1.08999 * 109.52571 * 302.31604 * 21 19 17 37 37 H 1.09005 * 109.52703 * 62.50519 * 21 19 17 38 38 H 1.09001 * 109.52836 * 297.09184 * 22 21 19 39 39 H 1.09006 * 109.61622 * 176.88452 * 22 21 19 40 40 H 1.09001 * 109.52535 * 183.12099 * 23 22 21 41 41 H 1.09000 * 109.57581 * 62.96023 * 23 22 21 42 42 H 1.09005 * 109.48017 * 297.62074 * 24 23 22 43 43 H 1.08998 * 109.49361 * 177.59864 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1077 -2.5527 -0.3041 11 6 -0.2466 -4.0213 -0.7771 12 6 0.7647 -4.7445 0.1512 13 6 1.8995 -3.7087 0.2961 14 1 2.6999 -3.9320 -0.4092 15 6 2.4413 -3.7313 1.7268 16 7 3.0899 -5.0196 1.9830 17 6 3.5427 -5.3123 3.2182 18 8 3.4127 -4.5092 4.1177 19 6 4.2105 -6.6373 3.4817 20 1 5.0400 -6.7707 2.7873 21 6 3.1961 -7.7675 3.2884 22 6 3.8657 -9.1056 3.6166 23 6 4.4128 -9.0535 5.0463 24 6 5.3802 -7.8735 5.1714 25 8 4.7026 -6.6646 4.8230 26 1 -0.4850 0.8401 0.0004 27 1 -0.7068 -2.3839 0.5906 28 1 -0.4088 -1.8673 -1.0963 29 1 -1.2593 -4.3900 -0.6141 30 1 0.0405 -4.1235 -1.8236 31 1 0.3120 -4.9637 1.1182 32 1 1.1352 -5.6559 -0.3180 33 1 3.1668 -2.9277 1.8532 34 1 1.6192 -3.5924 2.4288 35 1 3.1936 -5.6620 1.2636 36 1 2.3468 -7.6125 3.9538 37 1 2.8527 -7.7759 2.2539 38 1 4.6841 -9.2843 2.9191 39 1 3.1348 -9.9102 3.5349 40 1 4.9394 -9.9815 5.2689 41 1 3.5888 -8.9248 5.7481 42 1 6.2251 -8.0233 4.4992 43 1 5.7401 -7.8056 6.1980 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027828213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:39 Heat of formation + Delta-G solvation = -69.957008 kcal Electronic energy + Delta-G solvation = -22852.934008 eV Core-core repulsion = 19512.233235 eV Total energy + Delta-G solvation = -3340.700773 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.20654 -38.55304 -37.46969 -34.39269 -33.73611 -32.50066 -31.70467 -29.62766 -28.65011 -26.00490 -24.72244 -24.15845 -23.46844 -20.79909 -20.38512 -20.07363 -19.50458 -17.51845 -16.65238 -16.59846 -15.82043 -15.54873 -15.08540 -14.64039 -14.60293 -14.52200 -14.17327 -13.78657 -13.58437 -13.08038 -12.85820 -12.66871 -12.09406 -11.89588 -11.77589 -11.65265 -11.49451 -11.33443 -11.29743 -10.94556 -10.76823 -10.70534 -10.24996 -10.12561 -9.94570 -9.84481 -9.74252 -9.71087 -9.37512 -8.66281 -8.56550 -6.84295 -5.76609 -3.13388 2.84354 2.98978 3.41556 3.46394 3.47364 3.99218 4.45954 4.50366 4.52294 4.56864 4.68936 4.87132 4.96790 5.16150 5.28643 5.33673 5.39664 5.40815 5.49226 5.50693 5.61288 5.62228 5.71978 5.75362 5.80190 5.97597 6.05297 6.12587 6.23450 6.44864 6.54224 6.61778 6.70149 6.80097 6.94645 7.07473 7.51050 7.60576 7.78693 7.79279 8.25605 8.50650 9.17396 9.78011 10.45098 11.35368 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025058 B = 0.003851 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.134185 B = 7269.250327 C = 8124.427073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.110 3.890 16 N -0.720 5.720 17 C 0.512 3.488 18 O -0.521 6.521 19 C 0.075 3.925 20 H 0.081 0.919 21 C -0.146 4.146 22 C -0.121 4.121 23 C -0.159 4.159 24 C 0.059 3.941 25 O -0.353 6.353 26 H 0.254 0.746 27 H 0.026 0.974 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.395 0.605 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 -20.101 3.454 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.015 4.015 16 N -0.373 5.373 17 C 0.296 3.704 18 O -0.396 6.396 19 C 0.013 3.987 20 H 0.098 0.902 21 C -0.184 4.184 22 C -0.158 4.158 23 C -0.197 4.197 24 C -0.018 4.018 25 O -0.271 6.271 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.228 0.772 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.495 -19.061 4.232 20.577 hybrid contribution 0.564 0.310 -0.396 0.756 sum 7.059 -18.750 3.836 20.399 Atomic orbital electron populations 1.69927 1.05035 1.25460 1.55724 1.24913 0.95678 0.97882 1.01292 0.86223 0.78608 0.83039 0.78049 1.21058 1.21541 1.20906 1.18939 0.90378 0.82195 1.44903 0.90688 1.44474 1.06352 1.00933 1.79554 1.21459 0.84790 0.90165 0.98862 1.23007 0.97567 0.99636 0.98534 1.22607 0.97104 0.96933 0.99730 1.21131 0.94477 0.88101 0.91915 0.94496 1.22263 0.97088 0.82769 0.99332 1.46037 1.60616 1.20521 1.10168 1.20090 0.79394 0.87735 0.83180 1.90737 1.55434 1.49572 1.43829 1.21926 0.96691 0.93701 0.86359 0.90164 1.22143 0.98890 0.94119 1.03238 1.21586 1.00544 0.97051 0.96625 1.22221 1.00569 0.99087 0.97780 1.22648 0.93667 0.84215 1.01300 1.88091 1.74582 1.36895 1.27562 0.93530 0.95588 0.90949 0.92354 0.92312 0.91775 0.92448 0.91458 0.91528 0.77224 0.90293 0.90079 0.91562 0.91002 0.90788 0.90819 0.93114 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.57 55.49 0.59 -26.13 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.48 9.74 -15.06 -0.15 -6.62 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.59 -14.60 3.13 -162.57 -0.51 -15.10 16 10 C 0.17 4.09 5.42 -2.53 -0.01 4.07 16 11 C -0.15 -2.69 7.08 -24.58 -0.17 -2.86 16 12 C -0.13 -2.05 6.16 -24.90 -0.15 -2.20 16 13 C 0.15 2.97 3.20 -66.95 -0.21 2.76 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 15 C 0.11 2.15 5.09 -4.04 -0.02 2.13 16 16 N -0.72 -10.81 5.30 -60.29 -0.32 -11.13 16 17 C 0.51 8.45 7.18 -10.99 -0.08 8.37 16 18 O -0.52 -11.38 16.50 -14.30 -0.24 -11.61 16 19 C 0.07 0.91 3.05 -27.84 -0.09 0.83 16 20 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 21 C -0.15 -1.37 5.37 -26.59 -0.14 -1.51 16 22 C -0.12 -0.87 6.03 -26.55 -0.16 -1.03 16 23 C -0.16 -1.19 6.14 -26.60 -0.16 -1.36 16 24 C 0.06 0.54 6.84 37.21 0.25 0.79 16 25 O -0.35 -4.93 9.94 -55.09 -0.55 -5.47 16 26 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 28 H 0.07 1.91 6.93 -51.93 -0.36 1.55 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.05 7.79 -51.93 -0.40 0.64 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.50 7.88 -51.93 -0.41 1.09 16 34 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 35 H 0.39 4.49 8.23 -40.82 -0.34 4.15 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.62 7.99 -51.93 -0.41 0.21 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -33.48 341.86 -9.47 -42.95 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.38 Total: 0.92 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.19 Total: 3.25 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.24 Total: -52.36 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.78 Total: -17.09 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.48 -9.47 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027828213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.004 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds