Wall clock time and date at job start Tue Mar 31 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00396 * 2 1 4 4 H 1.48501 * 109.47153 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47197 * 300.00219 * 3 2 1 6 6 H 1.48502 * 109.47002 * 60.00208 * 3 2 1 7 7 C 1.38820 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00080 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99493 * 359.97438 * 7 2 1 10 10 C 1.47418 * 125.65049 * 345.90617 * 9 7 2 11 11 C 1.54912 * 104.83358 * 204.09289 * 10 9 7 12 12 C 1.55407 * 101.66661 * 323.07903 * 11 10 9 13 13 C 1.47025 * 125.64576 * 165.86819 * 9 7 2 14 14 H 1.08998 * 109.88136 * 59.39989 * 13 9 7 15 15 C 1.52999 * 109.88115 * 298.39335 * 13 9 7 16 16 N 1.46508 * 109.47100 * 174.60258 * 15 13 9 17 17 C 1.34768 * 120.00004 * 174.70577 * 16 15 13 18 18 O 1.21284 * 120.00108 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00089 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.49247 * 305.03411 * 19 17 16 21 21 C 1.53093 * 109.47646 * 65.06231 * 19 17 16 22 22 C 1.53173 * 109.16421 * 177.59012 * 21 19 17 23 23 C 1.53182 * 109.03713 * 303.02188 * 22 21 19 24 24 C 1.53091 * 109.16390 * 56.97960 * 23 22 21 25 25 O 1.42906 * 109.41256 * 302.38922 * 24 23 22 26 26 H 0.97008 * 119.99658 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.37218 * 322.93563 * 10 9 7 28 28 H 1.09006 * 110.36614 * 85.14981 * 10 9 7 29 29 H 1.09007 * 111.00342 * 81.06298 * 11 10 9 30 30 H 1.08997 * 111.00676 * 204.91860 * 11 10 9 31 31 H 1.08999 * 110.69042 * 277.04481 * 12 11 10 32 32 H 1.08995 * 110.85135 * 153.69756 * 12 11 10 33 33 H 1.09004 * 109.47118 * 54.60365 * 15 13 9 34 34 H 1.08996 * 109.47239 * 294.59932 * 15 13 9 35 35 H 0.96996 * 119.99718 * 354.70727 * 16 15 13 36 36 H 1.09005 * 109.51971 * 297.49859 * 21 19 17 37 37 H 1.08997 * 109.52346 * 57.61881 * 21 19 17 38 38 H 1.09008 * 109.53972 * 62.88436 * 22 21 19 39 39 H 1.09002 * 109.54518 * 183.06062 * 22 21 19 40 40 H 1.08996 * 109.51985 * 176.88277 * 23 22 21 41 41 H 1.08998 * 109.51564 * 297.00864 * 23 22 21 42 42 H 1.09001 * 109.47637 * 182.41340 * 24 23 22 43 43 H 1.08999 * 109.48215 * 62.37115 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3253 -2.3881 -0.0005 10 6 -0.1104 -2.5511 0.2917 11 6 -0.2539 -4.0179 0.7688 12 6 0.7677 -4.7477 -0.1472 13 6 1.9000 -3.7094 -0.2928 14 1 2.6992 -3.9308 0.4147 15 6 2.4482 -3.7341 -1.7210 16 7 3.1320 -5.0076 -1.9597 17 6 3.6040 -5.2992 -3.1879 18 8 3.4631 -4.5071 -4.0955 19 6 4.3080 -6.6089 -3.4333 20 1 5.1336 -6.7154 -2.7297 21 6 3.3207 -7.7630 -3.2405 22 6 4.0274 -9.0862 -3.5501 23 6 4.5874 -9.0321 -4.9748 24 6 5.5258 -7.8290 -5.1007 25 8 4.8140 -6.6349 -4.7695 26 1 -0.4850 0.8401 -0.0004 27 1 -0.4175 -1.8640 1.0801 28 1 -0.7021 -2.3836 -0.6083 29 1 0.0251 -4.1166 1.8179 30 1 -1.2653 -4.3870 0.5986 31 1 0.3235 -4.9725 -1.1169 32 1 1.1362 -5.6561 0.3293 33 1 3.1525 -2.9129 -1.8541 34 1 1.6256 -3.6254 -2.4278 35 1 3.2451 -5.6409 -1.2337 36 1 2.9671 -7.7714 -2.2094 37 1 2.4741 -7.6346 -3.9148 38 1 4.8432 -9.2380 -2.8432 39 1 3.3157 -9.9077 -3.4675 40 1 5.1397 -9.9482 -5.1841 41 1 3.7668 -8.9311 -5.6851 42 1 5.8938 -7.7607 -6.1244 43 1 6.3673 -7.9515 -4.4189 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027828214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:42 Heat of formation + Delta-G solvation = -70.035570 kcal Electronic energy + Delta-G solvation = -22847.105260 eV Core-core repulsion = 19506.401080 eV Total energy + Delta-G solvation = -3340.704180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20642 -38.55023 -37.46295 -34.39382 -33.73684 -32.50194 -31.70418 -29.62280 -28.65626 -26.00890 -24.72472 -24.15919 -23.47127 -20.79714 -20.38186 -20.08960 -19.50689 -17.51828 -16.65463 -16.60228 -15.82070 -15.55101 -15.08875 -14.64177 -14.60398 -14.52418 -14.16660 -13.78335 -13.58657 -13.07897 -12.85892 -12.67020 -12.08745 -11.90592 -11.77716 -11.64977 -11.49442 -11.33874 -11.30766 -10.94199 -10.80375 -10.70610 -10.24720 -10.08504 -9.93739 -9.84492 -9.74375 -9.71440 -9.37655 -8.67182 -8.57149 -6.84912 -5.77081 -3.13678 2.84176 2.98884 3.40135 3.46819 3.48553 3.99077 4.45642 4.50087 4.52131 4.56760 4.68867 4.87051 4.96683 5.16091 5.28484 5.33340 5.39535 5.40695 5.49017 5.50340 5.61165 5.61938 5.71816 5.75260 5.80314 5.97452 6.05348 6.11962 6.23175 6.44774 6.53982 6.61798 6.69999 6.79620 6.94391 7.07274 7.51475 7.60546 7.78740 7.79336 8.25073 8.50446 9.17075 9.77617 10.44490 11.34824 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.003853 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.192310 B = 7265.248243 C = 8126.906845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.110 3.890 16 N -0.720 5.720 17 C 0.512 3.488 18 O -0.521 6.521 19 C 0.075 3.925 20 H 0.081 0.919 21 C -0.146 4.146 22 C -0.121 4.121 23 C -0.159 4.159 24 C 0.059 3.941 25 O -0.354 6.354 26 H 0.253 0.747 27 H 0.073 0.927 28 H 0.026 0.974 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.395 0.605 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.013 -20.062 -3.322 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.015 4.015 16 N -0.373 5.373 17 C 0.296 3.704 18 O -0.396 6.396 19 C 0.013 3.987 20 H 0.098 0.902 21 C -0.184 4.184 22 C -0.158 4.158 23 C -0.197 4.197 24 C -0.018 4.018 25 O -0.271 6.271 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.809 -19.040 -4.106 20.633 hybrid contribution 0.550 0.322 0.394 0.749 sum 7.359 -18.718 -3.712 20.452 Atomic orbital electron populations 1.69948 1.05032 1.25210 1.55926 1.24913 0.95689 0.97894 1.01370 0.86067 0.78941 0.83639 0.77258 1.20355 1.21570 1.21708 1.19037 0.90444 0.82162 1.44587 0.90554 1.44504 1.06109 1.00904 1.79807 1.21468 0.84721 0.90227 0.98912 1.23050 0.97489 0.99573 0.98592 1.22652 0.97083 0.96903 0.99762 1.21124 0.94475 0.88092 0.91938 0.94521 1.22273 0.96507 0.83274 0.99445 1.46038 1.59097 1.21829 1.10373 1.20089 0.79609 0.87476 0.83218 1.90736 1.56191 1.49643 1.43014 1.21930 0.96547 0.93711 0.86495 0.90158 1.22143 0.98937 0.94034 1.03281 1.21587 1.00344 0.97178 0.96699 1.22221 1.00637 0.98970 0.97823 1.22648 0.93359 0.84398 1.01419 1.88093 1.72763 1.38256 1.28021 0.93640 0.90848 0.95615 0.92321 0.92344 0.91819 0.92391 0.91376 0.91596 0.77222 0.90091 0.90297 0.91558 0.91003 0.90789 0.90820 0.88490 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 10.55 55.49 0.59 -26.09 16 2 C 0.00 -0.04 5.47 -17.43 -0.10 -0.13 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.42 9.71 -15.06 -0.15 -6.56 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.59 -14.58 3.13 -162.58 -0.51 -15.09 16 10 C 0.17 4.07 5.42 -2.53 -0.01 4.06 16 11 C -0.15 -2.68 7.09 -24.44 -0.17 -2.85 16 12 C -0.13 -2.05 6.26 -24.76 -0.16 -2.21 16 13 C 0.15 2.97 3.18 -66.95 -0.21 2.75 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 15 C 0.11 2.13 5.11 -4.04 -0.02 2.11 16 16 N -0.72 -10.80 5.33 -60.29 -0.32 -11.12 16 17 C 0.51 8.44 7.18 -10.99 -0.08 8.36 16 18 O -0.52 -11.36 16.50 -14.30 -0.24 -11.60 16 19 C 0.07 0.91 3.05 -27.83 -0.09 0.83 16 20 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 21 C -0.15 -1.37 5.37 -26.59 -0.14 -1.51 16 22 C -0.12 -0.87 6.03 -26.55 -0.16 -1.03 16 23 C -0.16 -1.19 6.14 -26.59 -0.16 -1.35 16 24 C 0.06 0.54 6.84 37.20 0.25 0.79 16 25 O -0.35 -4.92 9.94 -55.09 -0.55 -5.47 16 26 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.07 1.94 6.89 -51.93 -0.36 1.58 16 28 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.04 7.76 -51.93 -0.40 0.63 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.52 7.84 -51.93 -0.41 1.11 16 34 H 0.07 1.43 8.01 -51.93 -0.42 1.02 16 35 H 0.39 4.49 8.27 -40.82 -0.34 4.15 16 36 H 0.08 0.62 7.99 -51.93 -0.41 0.21 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -33.48 341.85 -9.47 -42.94 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.37 Total: 0.85 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.19 Total: 3.25 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.24 Total: -52.31 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.78 Total: -17.07 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.48 -9.47 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027828214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.093 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds