Wall clock time and date at job start Tue Mar 31 2020 06:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86808 * 119.99887 * 2 1 4 4 H 1.48505 * 109.46848 * 269.99921 * 3 2 1 5 5 H 1.48502 * 109.46801 * 29.99913 * 3 2 1 6 6 H 1.48495 * 109.47447 * 150.00023 * 3 2 1 7 7 C 1.38811 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99916 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64766 * 345.75491 * 9 7 2 11 11 C 1.54906 * 104.83427 * 204.17464 * 10 9 7 12 12 C 1.55154 * 101.58080 * 322.99675 * 11 10 9 13 13 C 1.47023 * 125.64968 * 165.81649 * 9 7 2 14 14 H 1.08996 * 110.01395 * 59.40034 * 13 9 7 15 15 C 1.53004 * 109.87974 * 298.31034 * 13 9 7 16 16 N 1.46490 * 109.47145 * 176.74346 * 15 13 9 17 17 C 1.34773 * 120.00372 * 174.96989 * 16 15 13 18 18 O 1.21286 * 119.99678 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00456 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.47948 * 55.02408 * 19 17 16 21 21 C 1.53087 * 109.48158 * 294.99927 * 19 17 16 22 22 C 1.53183 * 109.21798 * 182.37323 * 21 19 17 23 23 C 1.53315 * 108.96118 * 56.95191 * 22 21 19 24 24 C 1.53091 * 109.19879 * 303.05988 * 23 22 21 25 25 O 1.42900 * 109.41447 * 57.60926 * 24 23 22 26 26 H 0.96998 * 120.00289 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.36170 * 85.33819 * 10 9 7 28 28 H 1.09001 * 110.46079 * 323.06452 * 10 9 7 29 29 H 1.08997 * 111.00764 * 204.91445 * 11 10 9 30 30 H 1.09002 * 111.03280 * 81.08070 * 11 10 9 31 31 H 1.09001 * 110.71988 * 277.13457 * 12 11 10 32 32 H 1.09008 * 110.71841 * 153.86612 * 12 11 10 33 33 H 1.08997 * 109.47386 * 56.73809 * 15 13 9 34 34 H 1.09006 * 109.47013 * 296.74354 * 15 13 9 35 35 H 0.97007 * 120.00297 * 354.96777 * 16 15 13 36 36 H 1.08992 * 109.52666 * 302.31544 * 21 19 17 37 37 H 1.09008 * 109.52047 * 62.44294 * 21 19 17 38 38 H 1.08994 * 109.54577 * 176.88333 * 22 21 19 39 39 H 1.08997 * 109.54032 * 297.15152 * 22 21 19 40 40 H 1.09006 * 109.50389 * 183.14142 * 23 22 21 41 41 H 1.09000 * 109.55559 * 63.01189 * 23 22 21 42 42 H 1.08999 * 109.48084 * 297.62594 * 24 23 22 43 43 H 1.08998 * 109.48711 * 177.59461 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1097 -2.5516 0.2948 11 6 -0.2519 -4.0181 0.7728 12 6 0.7660 -4.7451 -0.1451 13 6 1.9005 -3.7093 -0.2917 14 1 2.7000 -3.9327 0.4146 15 6 2.4468 -3.7345 -1.7207 16 7 3.0862 -5.0275 -1.9762 17 6 3.5520 -5.3174 -3.2072 18 8 3.4415 -4.5078 -4.1036 19 6 4.2103 -6.6472 -3.4700 20 1 3.5353 -7.4512 -3.1767 21 6 5.5046 -6.7455 -2.6583 22 6 6.1987 -8.0739 -2.9750 23 6 6.4502 -8.1569 -4.4851 24 6 5.1194 -8.0040 -5.2263 25 8 4.5127 -6.7626 -4.8620 26 1 -0.4850 0.8400 0.0004 27 1 -0.7025 -2.3867 -0.6049 28 1 -0.4178 -1.8642 1.0826 29 1 -1.2634 -4.3877 0.6044 30 1 0.0281 -4.1166 1.8217 31 1 0.3202 -4.9685 -1.1144 32 1 1.1332 -5.6546 0.3305 33 1 3.1789 -2.9365 -1.8440 34 1 1.6280 -3.5885 -2.4253 35 1 3.1743 -5.6752 -1.2594 36 1 6.1635 -5.9183 -2.9218 37 1 5.2715 -6.7010 -1.5944 38 1 7.1481 -8.1252 -2.4423 39 1 5.5603 -8.9015 -2.6660 40 1 6.8935 -9.1227 -4.7277 41 1 7.1288 -7.3588 -4.7864 42 1 4.4564 -8.8259 -4.9561 43 1 5.2982 -8.0195 -6.3014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027828215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:45 Heat of formation + Delta-G solvation = -70.009176 kcal Electronic energy + Delta-G solvation = -22821.979373 eV Core-core repulsion = 19481.276338 eV Total energy + Delta-G solvation = -3340.703035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20403 -38.55268 -37.46856 -34.39276 -33.73166 -32.50291 -31.70042 -29.63300 -28.64476 -26.00946 -24.72923 -24.15433 -23.46914 -20.79164 -20.41287 -20.04041 -19.51368 -17.51903 -16.66993 -16.60414 -15.78352 -15.46067 -15.23133 -14.66335 -14.58924 -14.53079 -14.00988 -13.90838 -13.55130 -13.09160 -12.87271 -12.65478 -12.08833 -11.89073 -11.80046 -11.63259 -11.50266 -11.34284 -11.28682 -10.94015 -10.79292 -10.70660 -10.24814 -10.10272 -9.93806 -9.84490 -9.74006 -9.71000 -9.37626 -8.66896 -8.57279 -6.84692 -5.76795 -3.13523 2.84139 2.98820 3.40987 3.46642 3.47292 3.99104 4.45906 4.50488 4.52524 4.56951 4.69156 4.86947 4.96495 5.16189 5.28537 5.33446 5.39364 5.41235 5.49398 5.50748 5.61275 5.62510 5.72419 5.75710 5.80358 5.97951 6.05426 6.12530 6.23623 6.45095 6.54175 6.61797 6.69981 6.80009 6.94598 7.07275 7.51373 7.60514 7.78662 7.79214 8.25232 8.50454 9.17189 9.77801 10.44780 11.35121 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.003833 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.528124 B = 7303.803149 C = 7938.048263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.110 3.890 16 N -0.720 5.720 17 C 0.512 3.488 18 O -0.521 6.521 19 C 0.075 3.925 20 H 0.081 0.919 21 C -0.147 4.147 22 C -0.120 4.120 23 C -0.159 4.159 24 C 0.059 3.941 25 O -0.354 6.354 26 H 0.254 0.746 27 H 0.026 0.974 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.395 0.605 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.606 -19.291 -2.898 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.015 4.015 16 N -0.373 5.373 17 C 0.296 3.704 18 O -0.396 6.396 19 C 0.014 3.986 20 H 0.098 0.902 21 C -0.185 4.185 22 C -0.158 4.158 23 C -0.197 4.197 24 C -0.018 4.018 25 O -0.271 6.271 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.401 -18.259 -3.670 20.431 hybrid contribution 0.591 0.331 0.392 0.783 sum 8.993 -17.927 -3.278 20.323 Atomic orbital electron populations 1.69932 1.05033 1.25334 1.55830 1.24908 0.95676 0.97875 1.01340 0.86148 0.78697 0.83343 0.77746 1.21358 1.21638 1.20573 1.18986 0.90408 0.82183 1.44743 0.90630 1.44488 1.06141 1.00885 1.79787 1.21463 0.84722 0.90233 0.98881 1.23005 0.97523 0.99616 0.98578 1.22613 0.97121 0.96945 0.99769 1.21124 0.94465 0.88091 0.91931 0.94502 1.22265 0.97201 0.82630 0.99365 1.46037 1.60607 1.20069 1.10628 1.20092 0.79130 0.88041 0.83142 1.90738 1.55683 1.49315 1.43837 1.21922 0.96313 0.96342 0.84063 0.90156 1.22148 0.96745 0.99230 1.00341 1.21610 1.01108 0.96972 0.96096 1.22248 0.98712 1.02814 0.95900 1.22645 0.92867 0.86308 0.99987 1.88092 1.80436 1.36716 1.21894 0.93581 0.95634 0.90853 0.92343 0.92306 0.91798 0.92414 0.91463 0.91552 0.77219 0.90285 0.90100 0.90988 0.91548 0.90792 0.90820 0.93110 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.56 55.49 0.59 -26.11 16 2 C 0.00 -0.02 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.44 9.75 -15.06 -0.15 -6.59 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.59 -14.59 3.13 -162.57 -0.51 -15.10 16 10 C 0.17 4.09 5.42 -2.53 -0.01 4.07 16 11 C -0.15 -2.69 7.08 -24.59 -0.17 -2.87 16 12 C -0.13 -2.07 6.14 -24.90 -0.15 -2.23 16 13 C 0.15 2.97 3.21 -66.95 -0.21 2.76 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 15 C 0.11 2.14 5.08 -4.05 -0.02 2.12 16 16 N -0.72 -10.80 5.30 -60.30 -0.32 -11.12 16 17 C 0.51 8.44 7.18 -10.99 -0.08 8.36 16 18 O -0.52 -11.37 16.50 -14.30 -0.24 -11.61 16 19 C 0.08 0.92 3.06 -27.84 -0.09 0.83 16 20 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 21 C -0.15 -1.41 5.37 -26.59 -0.14 -1.55 16 22 C -0.12 -0.88 6.04 -26.47 -0.16 -1.04 16 23 C -0.16 -1.21 6.14 -26.52 -0.16 -1.37 16 24 C 0.06 0.54 6.84 37.20 0.25 0.79 16 25 O -0.35 -4.92 9.94 -55.09 -0.55 -5.47 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 28 H 0.07 1.94 6.90 -51.93 -0.36 1.58 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.05 7.80 -51.93 -0.40 0.64 16 32 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.07 1.49 7.90 -51.93 -0.41 1.08 16 34 H 0.07 1.46 8.06 -51.93 -0.42 1.04 16 35 H 0.39 4.49 8.20 -40.82 -0.33 4.15 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.64 7.99 -51.92 -0.41 0.23 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -33.46 341.84 -9.47 -42.94 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.38 Total: 0.97 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.19 Total: 3.18 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.24 Total: -52.33 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.78 Total: -17.07 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.46 -9.47 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027828215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.074 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds