Wall clock time and date at job start Tue Mar 31 2020 06:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86808 * 119.99887 * 2 1 4 4 H 1.48505 * 109.46848 * 269.99921 * 3 2 1 5 5 H 1.48502 * 109.46801 * 29.99913 * 3 2 1 6 6 H 1.48495 * 109.47447 * 150.00023 * 3 2 1 7 7 C 1.38811 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99916 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64766 * 345.75491 * 9 7 2 11 11 C 1.54906 * 104.83427 * 204.17464 * 10 9 7 12 12 C 1.55154 * 101.58080 * 322.99675 * 11 10 9 13 13 C 1.47023 * 125.64968 * 165.81649 * 9 7 2 14 14 H 1.08996 * 110.01395 * 59.40034 * 13 9 7 15 15 C 1.53004 * 109.87974 * 298.31034 * 13 9 7 16 16 N 1.46490 * 109.47145 * 176.74346 * 15 13 9 17 17 C 1.34773 * 120.00372 * 174.96989 * 16 15 13 18 18 O 1.21286 * 119.99678 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00456 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.47948 * 55.02408 * 19 17 16 21 21 C 1.53087 * 109.48158 * 294.99927 * 19 17 16 22 22 C 1.53183 * 109.21798 * 182.37323 * 21 19 17 23 23 C 1.53315 * 108.96118 * 56.95191 * 22 21 19 24 24 C 1.53091 * 109.19879 * 303.05988 * 23 22 21 25 25 O 1.42900 * 109.41447 * 57.60926 * 24 23 22 26 26 H 0.96998 * 120.00289 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.36170 * 85.33819 * 10 9 7 28 28 H 1.09001 * 110.46079 * 323.06452 * 10 9 7 29 29 H 1.08997 * 111.00764 * 204.91445 * 11 10 9 30 30 H 1.09002 * 111.03280 * 81.08070 * 11 10 9 31 31 H 1.09001 * 110.71988 * 277.13457 * 12 11 10 32 32 H 1.09008 * 110.71841 * 153.86612 * 12 11 10 33 33 H 1.08997 * 109.47386 * 56.73809 * 15 13 9 34 34 H 1.09006 * 109.47013 * 296.74354 * 15 13 9 35 35 H 0.97007 * 120.00297 * 354.96777 * 16 15 13 36 36 H 1.08992 * 109.52666 * 302.31544 * 21 19 17 37 37 H 1.09008 * 109.52047 * 62.44294 * 21 19 17 38 38 H 1.08994 * 109.54577 * 176.88333 * 22 21 19 39 39 H 1.08997 * 109.54032 * 297.15152 * 22 21 19 40 40 H 1.09006 * 109.50389 * 183.14142 * 23 22 21 41 41 H 1.09000 * 109.55559 * 63.01189 * 23 22 21 42 42 H 1.08999 * 109.48084 * 297.62594 * 24 23 22 43 43 H 1.08998 * 109.48711 * 177.59461 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1097 -2.5516 0.2948 11 6 -0.2519 -4.0181 0.7728 12 6 0.7660 -4.7451 -0.1451 13 6 1.9005 -3.7093 -0.2917 14 1 2.7000 -3.9327 0.4146 15 6 2.4468 -3.7345 -1.7207 16 7 3.0862 -5.0275 -1.9762 17 6 3.5520 -5.3174 -3.2072 18 8 3.4415 -4.5078 -4.1036 19 6 4.2103 -6.6472 -3.4700 20 1 3.5353 -7.4512 -3.1767 21 6 5.5046 -6.7455 -2.6583 22 6 6.1987 -8.0739 -2.9750 23 6 6.4502 -8.1569 -4.4851 24 6 5.1194 -8.0040 -5.2263 25 8 4.5127 -6.7626 -4.8620 26 1 -0.4850 0.8400 0.0004 27 1 -0.7025 -2.3867 -0.6049 28 1 -0.4178 -1.8642 1.0826 29 1 -1.2634 -4.3877 0.6044 30 1 0.0281 -4.1166 1.8217 31 1 0.3202 -4.9685 -1.1144 32 1 1.1332 -5.6546 0.3305 33 1 3.1789 -2.9365 -1.8440 34 1 1.6280 -3.5885 -2.4253 35 1 3.1743 -5.6752 -1.2594 36 1 6.1635 -5.9183 -2.9218 37 1 5.2715 -6.7010 -1.5944 38 1 7.1481 -8.1252 -2.4423 39 1 5.5603 -8.9015 -2.6660 40 1 6.8935 -9.1227 -4.7277 41 1 7.1288 -7.3588 -4.7864 42 1 4.4564 -8.8259 -4.9561 43 1 5.2982 -8.0195 -6.3014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027828215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:44 Heat of formation + Delta-G solvation = -93.041514 kcal Electronic energy + Delta-G solvation = -22822.978130 eV Core-core repulsion = 19481.276338 eV Total energy + Delta-G solvation = -3341.701792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32560 -39.79022 -39.00177 -35.85304 -34.62633 -34.36253 -32.63160 -31.38265 -30.23123 -27.14742 -26.50626 -25.16005 -24.72975 -22.10605 -21.65312 -21.25150 -21.06472 -18.99919 -18.24394 -17.78241 -17.01204 -16.68903 -16.44266 -16.36587 -15.73609 -15.62259 -15.43914 -15.15482 -14.80868 -14.41255 -13.99152 -13.72570 -13.64428 -13.59811 -13.37022 -12.99732 -12.85679 -12.70246 -12.50979 -12.16996 -12.01567 -11.93323 -11.86245 -11.73057 -11.48670 -11.40243 -11.36723 -10.77033 -10.69298 -10.46599 -10.11190 -8.87154 -7.89518 -5.27056 1.42883 1.46091 1.53221 1.54962 1.83849 2.47677 3.05363 3.30431 3.56505 3.76596 3.79037 3.92057 3.95646 3.98706 4.04394 4.07540 4.21286 4.27729 4.44857 4.50282 4.54557 4.66009 4.72905 4.82143 4.87373 4.96154 5.00304 5.04466 5.10325 5.14868 5.18485 5.21437 5.34542 5.38831 5.46691 5.56499 5.66527 5.78103 6.14141 6.22295 6.59131 7.08168 7.24984 7.75503 8.40943 9.21326 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.003833 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.528124 B = 7303.803149 C = 7938.048263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.971 3.029 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.612 5.612 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.113 4.113 13 C 0.149 3.851 14 H 0.057 0.943 15 C 0.129 3.871 16 N -0.699 5.699 17 C 0.507 3.493 18 O -0.585 6.585 19 C 0.083 3.917 20 H 0.116 0.884 21 C -0.144 4.144 22 C -0.116 4.116 23 C -0.158 4.158 24 C 0.051 3.949 25 O -0.396 6.396 26 H 0.248 0.752 27 H -0.011 1.011 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.418 0.582 36 H 0.053 0.947 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.983 -22.971 -1.643 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.799 3.201 4 H -0.220 1.220 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.336 5.336 10 C 0.047 3.953 11 C -0.171 4.171 12 C -0.151 4.151 13 C 0.042 3.958 14 H 0.074 0.926 15 C 0.003 3.997 16 N -0.353 5.353 17 C 0.293 3.707 18 O -0.464 6.464 19 C 0.022 3.978 20 H 0.134 0.866 21 C -0.182 4.182 22 C -0.153 4.153 23 C -0.195 4.195 24 C -0.025 4.025 25 O -0.315 6.315 26 H 0.057 0.943 27 H 0.007 0.993 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.256 0.744 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.814 -22.017 -2.376 24.222 hybrid contribution 0.197 1.426 -0.055 1.440 sum 10.011 -20.592 -2.431 23.025 Atomic orbital electron populations 1.70136 1.06298 1.25389 1.57536 1.25678 0.96510 1.01006 1.02149 0.85197 0.78054 0.79594 0.77238 1.21981 1.21699 1.19055 1.19314 0.90782 0.83651 1.43246 0.90500 1.44767 1.06625 1.02096 1.80129 1.21283 0.84006 0.93727 0.96270 1.22867 0.99642 0.95122 0.99494 1.22616 0.95059 0.97479 0.99906 1.21355 0.96185 0.86700 0.91594 0.92561 1.21708 0.95319 0.83918 0.98756 1.45690 1.59527 1.18784 1.11324 1.21075 0.78027 0.89278 0.82307 1.90709 1.58136 1.51736 1.45835 1.21963 0.97825 0.93816 0.84225 0.86635 1.22181 0.95060 0.99974 1.01006 1.21638 1.01913 0.95980 0.95767 1.22248 0.97548 1.03556 0.96170 1.22919 0.93870 0.85089 1.00619 1.88038 1.81271 1.39408 1.22824 0.94313 0.99321 0.94447 0.89966 0.90892 0.91853 0.87216 0.95034 0.94868 0.74407 0.92792 0.87929 0.89657 0.89289 0.88246 0.92514 0.90967 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.66 10.56 21.65 0.23 -57.43 16 2 C -0.06 -3.45 5.47 84.86 0.46 -2.99 16 3 Si 0.97 46.91 29.55 68.60 2.03 48.94 16 4 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.24 -13.53 9.75 84.03 0.82 -12.71 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 N -0.61 -30.80 3.13 -668.27 -2.09 -32.89 16 10 C 0.17 8.39 5.42 86.85 0.47 8.86 16 11 C -0.13 -4.50 7.08 31.98 0.23 -4.27 16 12 C -0.11 -3.31 6.14 31.78 0.20 -3.11 16 13 C 0.15 5.61 3.21 45.34 0.15 5.76 16 14 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 15 C 0.13 5.09 5.08 86.38 0.44 5.53 16 16 N -0.70 -19.90 5.30 -463.07 -2.46 -22.35 16 17 C 0.51 16.47 7.18 87.66 0.63 17.10 16 18 O -0.58 -26.56 16.50 15.94 0.26 -26.30 16 19 C 0.08 1.83 3.06 29.88 0.09 1.92 16 20 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 21 C -0.14 -2.36 5.37 30.68 0.16 -2.19 16 22 C -0.12 -1.23 6.04 30.76 0.19 -1.04 16 23 C -0.16 -1.94 6.14 30.73 0.19 -1.75 16 24 C 0.05 0.81 6.84 72.01 0.49 1.31 16 25 O -0.40 -10.65 9.94 -130.00 -1.29 -11.94 16 26 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 27 H -0.01 -0.62 8.07 -2.39 -0.02 -0.64 16 28 H 0.04 2.06 6.90 -2.39 -0.02 2.04 16 29 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.06 1.90 7.80 -2.39 -0.02 1.88 16 32 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.03 1.45 7.90 -2.39 -0.02 1.43 16 34 H 0.03 1.52 8.06 -2.38 -0.02 1.50 16 35 H 0.42 7.90 8.20 -92.70 -0.76 7.14 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.20 7.99 -2.38 -0.02 1.18 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -79.75 341.84 1.42 -78.34 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.22 Total: 11.23 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 4.51 Total: 12.41 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -4.32 Total: -112.67 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.03 Total: -38.24 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -79.75 1.42 -78.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027828215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.705 kcal (2) G-P(sol) polarization free energy of solvation -79.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds