Wall clock time and date at job start Tue Mar 31 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00113 * 2 1 4 4 H 1.48498 * 109.47339 * 94.92454 * 3 2 1 5 5 H 1.48507 * 109.47085 * 214.92706 * 3 2 1 6 6 H 1.48494 * 109.47033 * 334.92475 * 3 2 1 7 7 C 1.38812 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00013 * 9.83535 * 7 2 1 9 9 N 1.36936 * 120.00326 * 189.82895 * 7 2 1 10 10 C 1.47425 * 125.65214 * 226.63512 * 9 7 2 11 11 C 1.54912 * 104.83409 * 155.83005 * 10 9 7 12 12 C 1.55156 * 101.57755 * 37.01280 * 11 10 9 13 13 C 1.47024 * 125.64671 * 46.32349 * 9 7 2 14 14 H 1.09004 * 109.88058 * 300.51806 * 13 9 7 15 15 C 1.52999 * 109.88210 * 61.68019 * 13 9 7 16 16 N 1.46495 * 109.47157 * 300.18223 * 15 13 9 17 17 C 1.34779 * 120.00191 * 174.03478 * 16 15 13 18 18 O 1.21283 * 119.99769 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00338 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.47554 * 305.00045 * 19 17 16 21 21 C 1.53091 * 109.48472 * 65.02095 * 19 17 16 22 22 C 1.53174 * 109.16538 * 177.58095 * 21 19 17 23 23 C 1.53175 * 109.04621 * 303.03944 * 22 21 19 24 24 C 1.53091 * 109.16410 * 56.97600 * 23 22 21 25 25 O 1.42905 * 109.48081 * 184.98085 * 19 17 16 26 26 H 0.97003 * 119.99983 * 359.97438 * 1 2 3 27 27 H 1.08998 * 110.36549 * 274.67259 * 10 9 7 28 28 H 1.09003 * 110.36453 * 36.99314 * 10 9 7 29 29 H 1.09005 * 111.00182 * 155.08129 * 11 10 9 30 30 H 1.08996 * 111.00458 * 278.93723 * 11 10 9 31 31 H 1.08999 * 110.72328 * 82.86191 * 12 11 10 32 32 H 1.09007 * 110.71842 * 206.13299 * 12 11 10 33 33 H 1.09004 * 109.46976 * 60.18432 * 15 13 9 34 34 H 1.08997 * 109.47222 * 180.18053 * 15 13 9 35 35 H 0.97001 * 120.00180 * 354.04211 * 16 15 13 36 36 H 1.09000 * 109.52211 * 297.50436 * 21 19 17 37 37 H 1.09000 * 109.51996 * 57.68797 * 21 19 17 38 38 H 1.09001 * 109.54326 * 183.16689 * 22 21 19 39 39 H 1.09004 * 109.60489 * 62.95253 * 22 21 19 40 40 H 1.09001 * 109.52273 * 297.07020 * 23 22 21 41 41 H 1.08998 * 109.57482 * 176.90864 * 23 22 21 42 42 H 1.08995 * 109.48399 * 182.41166 * 24 23 22 43 43 H 1.09001 * 109.49271 * 62.37461 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6018 1.9863 1.3949 5 1 3.4919 1.4724 -0.8016 6 1 1.3995 2.6804 -0.5933 7 6 2.0102 -1.2021 0.0005 8 1 1.4821 -2.1306 -0.1588 9 7 3.3645 -1.2108 0.2030 10 6 4.3483 -1.9619 -0.5980 11 6 5.6813 -1.1955 -0.4095 12 6 5.5837 -0.7621 1.0772 13 6 4.0790 -0.4676 1.2512 14 1 3.8931 0.6008 1.1402 15 6 3.6155 -0.9387 2.6310 16 7 2.1750 -0.7091 2.7670 17 6 1.5211 -1.1574 3.8569 18 8 2.1252 -1.7506 4.7253 19 6 0.0392 -0.9218 3.9966 20 1 -0.1697 0.1440 3.9032 21 6 -0.7051 -1.6860 2.8986 22 6 -2.2130 -1.4905 3.0837 23 6 -2.6090 -1.9572 4.4878 24 6 -1.7912 -1.1821 5.5242 25 8 -0.3981 -1.3827 5.2766 26 1 -0.4850 0.8401 0.0004 27 1 4.4412 -2.9820 -0.2254 28 1 4.0583 -1.9658 -1.6487 29 1 6.5359 -1.8529 -0.5695 30 1 5.7293 -0.3276 -1.0671 31 1 5.9010 -1.5703 1.7361 32 1 6.1735 0.1369 1.2563 33 1 3.8259 -2.0026 2.7413 34 1 4.1467 -0.3815 3.4026 35 1 1.6919 -0.2345 2.0727 36 1 -0.4053 -1.3052 1.9224 37 1 -0.4646 -2.7470 2.9663 38 1 -2.7509 -2.0775 2.3391 39 1 -2.4623 -0.4359 2.9660 40 1 -2.4069 -3.0236 4.5878 41 1 -3.6709 -1.7711 4.6486 42 1 -2.0379 -1.5402 6.5237 43 1 -2.0242 -0.1198 5.4509 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027828216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:48 Heat of formation + Delta-G solvation = -67.699307 kcal Electronic energy + Delta-G solvation = -24205.565570 eV Core-core repulsion = 20864.962699 eV Total energy + Delta-G solvation = -3340.602872 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.68757 -38.43919 -37.42024 -33.93874 -33.12314 -32.77627 -31.18385 -30.13099 -29.11922 -25.75806 -24.72604 -23.58179 -23.10188 -20.77083 -20.12200 -20.00773 -19.40990 -17.21873 -16.61350 -16.18318 -15.77704 -15.30534 -14.86085 -14.74216 -14.32558 -13.99389 -13.87683 -13.55458 -13.28691 -13.16857 -12.59970 -12.34165 -12.23440 -12.15508 -11.91994 -11.32615 -11.29517 -11.10932 -10.94359 -10.77117 -10.74945 -10.62249 -10.50151 -10.41516 -10.08624 -9.98657 -9.66709 -9.17970 -8.92770 -8.75610 -8.14730 -6.83323 -6.26022 -3.79713 3.10025 3.26904 3.31383 3.34016 3.53916 4.21832 4.58640 4.83133 4.96901 5.11637 5.16109 5.20353 5.25546 5.39247 5.40499 5.46674 5.48084 5.60377 5.73013 5.83581 5.88655 5.92063 6.04690 6.10784 6.14701 6.19664 6.24287 6.24883 6.33400 6.39958 6.44888 6.62218 6.68167 6.78243 6.80635 6.97830 7.28684 7.50824 7.81390 8.15234 8.43663 8.63415 9.03587 9.34573 10.06231 10.85626 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020432 B = 0.006575 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.087008 B = 4257.253140 C = 4912.049262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.873 3.127 4 H -0.279 1.279 5 H -0.265 1.265 6 H -0.296 1.296 7 C -0.231 4.231 8 H 0.084 0.916 9 N -0.606 5.606 10 C 0.128 3.872 11 C -0.136 4.136 12 C -0.123 4.123 13 C 0.127 3.873 14 H 0.040 0.960 15 C 0.120 3.880 16 N -0.701 5.701 17 C 0.516 3.484 18 O -0.551 6.551 19 C 0.079 3.921 20 H 0.073 0.927 21 C -0.157 4.157 22 C -0.112 4.112 23 C -0.159 4.159 24 C 0.061 3.939 25 O -0.361 6.361 26 H 0.269 0.731 27 H 0.028 0.972 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.418 0.582 36 H 0.130 0.870 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 0.376 3.593 3.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.176 4.176 3 Si 0.703 3.297 4 H -0.206 1.206 5 H -0.190 1.190 6 H -0.223 1.223 7 C -0.361 4.361 8 H 0.101 0.899 9 N -0.333 5.333 10 C 0.003 3.997 11 C -0.174 4.174 12 C -0.162 4.162 13 C 0.021 3.979 14 H 0.057 0.943 15 C -0.006 4.006 16 N -0.359 5.359 17 C 0.301 3.699 18 O -0.430 6.430 19 C 0.018 3.982 20 H 0.091 0.909 21 C -0.195 4.195 22 C -0.150 4.150 23 C -0.196 4.196 24 C -0.016 4.016 25 O -0.279 6.279 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.262 0.738 36 H 0.148 0.852 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.906 -0.017 4.280 4.375 hybrid contribution -0.108 1.369 -0.486 1.457 sum 0.798 1.352 3.795 4.107 Atomic orbital electron populations 1.69663 1.05202 1.27098 1.51803 1.25724 0.95534 0.97888 0.98435 0.87016 0.80263 0.84005 0.78443 1.20597 1.19001 1.22344 1.18601 0.79626 0.93442 1.44423 0.89901 1.44700 1.02881 1.55570 1.30101 1.21785 0.87998 0.94249 0.95621 1.22767 0.98337 1.00304 0.95987 1.22507 0.95184 1.01113 0.97378 1.21598 0.91663 0.95999 0.88658 0.94301 1.21823 0.80789 1.00936 0.97016 1.46344 1.09687 1.57784 1.22048 1.20106 0.88316 0.79313 0.82172 1.90612 1.68929 1.41950 1.41464 1.21864 0.92516 0.98552 0.85279 0.90921 1.22355 0.94622 1.01161 1.01345 1.21482 0.96240 1.01511 0.95773 1.22243 0.99663 1.01252 0.96468 1.22577 0.81587 0.98735 0.98708 1.87996 1.23466 1.83232 1.33182 0.92106 0.95392 0.93135 0.91608 0.91705 0.90936 0.91595 0.91623 0.93229 0.73845 0.85243 0.91603 0.91220 0.91879 0.91227 0.91360 0.89080 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.80 12.34 55.49 0.69 -22.11 16 2 C 0.02 0.61 3.63 -17.43 -0.06 0.55 16 3 Si 0.87 20.24 23.99 -169.99 -4.08 16.16 16 4 H -0.28 -6.33 6.81 56.52 0.38 -5.94 16 5 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -5.78 8.94 -15.06 -0.13 -5.91 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 9 N -0.61 -13.39 2.52 -162.57 -0.41 -13.80 16 10 C 0.13 2.40 7.23 -2.53 -0.02 2.38 16 11 C -0.14 -2.11 7.08 -24.58 -0.17 -2.28 16 12 C -0.12 -1.97 6.47 -24.90 -0.16 -2.13 16 13 C 0.13 2.56 2.51 -66.96 -0.17 2.40 16 14 H 0.04 0.85 3.72 -51.93 -0.19 0.66 16 15 C 0.12 2.50 5.21 -4.05 -0.02 2.48 16 16 N -0.70 -15.77 4.77 -60.30 -0.29 -16.06 16 17 C 0.52 11.77 7.18 -10.99 -0.08 11.69 16 18 O -0.55 -13.90 16.49 -14.30 -0.24 -14.13 16 19 C 0.08 1.58 3.05 -27.84 -0.09 1.50 16 20 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 21 C -0.16 -3.05 5.37 -26.59 -0.14 -3.19 16 22 C -0.11 -1.78 6.03 -26.55 -0.16 -1.94 16 23 C -0.16 -2.16 6.14 -26.59 -0.16 -2.33 16 24 C 0.06 0.88 6.84 37.20 0.25 1.14 16 25 O -0.36 -7.01 9.94 -55.09 -0.55 -7.56 16 26 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.42 9.69 3.70 -40.82 -0.15 9.54 16 36 H 0.13 2.86 6.29 -51.93 -0.33 2.53 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -28.48 326.78 -8.06 -36.53 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.99 Total: 11.70 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.12 Total: 4.34 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.01 Total: -51.97 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.78 Total: -21.69 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.08 Total: 16.16 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.48 -8.06 -36.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027828216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.164 kcal (2) G-P(sol) polarization free energy of solvation -28.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds