Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48503 * 109.47231 * 239.99657 * 3 2 1 5 5 H 1.48496 * 109.47168 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46980 * 120.00012 * 3 2 1 7 7 C 1.38815 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99361 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00014 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.65106 * 359.95856 * 9 7 2 11 11 C 1.54370 * 107.28981 * 181.12881 * 10 9 7 12 12 C 1.55157 * 102.91971 * 22.13901 * 11 10 9 13 13 H 1.09003 * 111.00698 * 82.64157 * 12 11 10 14 14 C 1.53005 * 111.00667 * 206.45077 * 12 11 10 15 15 N 1.46496 * 109.47059 * 181.81873 * 14 12 11 16 16 C 1.34774 * 119.99544 * 180.02562 * 15 14 12 17 17 O 1.21279 * 120.00472 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00020 * 180.02562 * 16 15 14 19 19 H 1.09004 * 109.51937 * 299.99710 * 18 16 15 20 20 C 1.53174 * 109.52218 * 179.87395 * 18 16 15 21 21 C 1.53190 * 109.03170 * 183.17264 * 20 18 16 22 22 C 1.53097 * 109.21100 * 56.88522 * 21 20 18 23 23 O 1.42905 * 109.41651 * 302.42571 * 22 21 20 24 24 C 1.42899 * 114.09789 * 61.15699 * 23 22 21 25 25 C 1.47431 * 125.64586 * 180.02562 * 9 7 2 26 26 H 0.97001 * 120.00262 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.88278 * 300.51364 * 10 9 7 28 28 H 1.09001 * 109.88274 * 61.52187 * 10 9 7 29 29 H 1.08992 * 110.70734 * 263.79661 * 11 10 9 30 30 H 1.08997 * 110.75527 * 140.50413 * 11 10 9 31 31 H 1.08996 * 109.46524 * 61.81979 * 14 12 11 32 32 H 1.08992 * 109.46876 * 301.82312 * 14 12 11 33 33 H 0.96994 * 120.00700 * 0.02562 * 15 14 12 34 34 H 1.08992 * 109.54688 * 302.97922 * 20 18 16 35 35 H 1.09005 * 109.54717 * 63.24588 * 20 18 16 36 36 H 1.09002 * 109.47016 * 296.98332 * 21 20 18 37 37 H 1.08997 * 109.57690 * 176.85792 * 21 20 18 38 38 H 1.08997 * 109.47534 * 182.44402 * 22 21 20 39 39 H 1.09003 * 109.48798 * 62.41576 * 22 21 20 40 40 H 1.08994 * 109.48328 * 178.86150 * 24 23 22 41 41 H 1.09003 * 109.48365 * 58.82426 * 24 23 22 42 42 H 1.09000 * 110.36510 * 36.98897 * 25 9 7 43 43 H 1.09005 * 110.45267 * 274.71667 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1375 -2.5327 -0.0014 11 6 -0.4490 -4.0444 0.0262 12 6 0.8520 -4.6561 0.6097 13 1 0.8576 -4.5970 1.6981 14 6 1.0370 -6.1009 0.1412 15 7 2.2496 -6.6586 0.7451 16 6 2.6157 -7.9269 0.4733 17 8 1.9416 -8.6062 -0.2717 18 6 3.8627 -8.5009 1.0950 19 1 4.7262 -7.9078 0.7935 20 6 4.0477 -9.9481 0.6284 21 6 5.2726 -10.5458 1.3279 22 6 5.0876 -10.4418 2.8441 23 8 4.8906 -9.0734 3.2059 24 6 3.7322 -8.4759 2.6201 25 6 1.9335 -3.7312 -0.0017 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5574 -2.0522 0.8823 28 1 -0.5547 -2.0819 -0.9018 29 1 -0.6330 -4.4184 -0.9809 30 1 -1.2984 -4.2520 0.6769 31 1 1.1293 -6.1216 -0.9447 32 1 0.1743 -6.6942 0.4439 33 1 2.7889 -6.1153 1.3406 34 1 3.1625 -10.5299 0.8850 35 1 4.1978 -9.9670 -0.4511 36 1 6.1651 -9.9949 1.0312 37 1 5.3800 -11.5929 1.0450 38 1 5.9756 -10.8262 3.3457 39 1 4.2181 -11.0262 3.1453 40 1 3.6438 -7.4442 2.9604 41 1 2.8449 -9.0345 2.9182 42 1 2.8330 -3.7405 0.6138 43 1 2.1678 -4.0431 -1.0196 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028436848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = -74.302344 kcal Electronic energy + Delta-G solvation = -22437.704595 eV Core-core repulsion = 19096.815394 eV Total energy + Delta-G solvation = -3340.889201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.46822 -38.81627 -37.62046 -34.74584 -33.84605 -32.63396 -31.65254 -29.74264 -28.26999 -25.82914 -25.21168 -24.58991 -23.30500 -21.18675 -20.33706 -19.97687 -19.57178 -17.48220 -16.80580 -16.59327 -16.28510 -15.90371 -15.43406 -15.06656 -14.63759 -14.31117 -14.22347 -13.92415 -13.62230 -13.20519 -12.98103 -12.77727 -12.36684 -12.07277 -11.86619 -11.73111 -11.44701 -11.42046 -11.23711 -10.91850 -10.78916 -10.73714 -10.43485 -10.18863 -10.05864 -9.92859 -9.88051 -9.67516 -9.62010 -9.00667 -8.60872 -6.84756 -5.72303 -3.06051 2.56121 3.12756 3.39760 3.43984 3.45347 3.54418 4.31797 4.48101 4.51145 4.52660 4.60390 4.79559 4.94488 5.05168 5.11573 5.21349 5.26131 5.36008 5.39972 5.45245 5.52465 5.54006 5.63367 5.67258 5.82062 5.87511 5.98525 6.02427 6.04159 6.32565 6.40928 6.47956 6.51474 6.66386 6.79866 6.89003 7.49035 7.54455 7.61693 7.81470 8.17923 8.25081 9.20960 9.81371 10.47380 11.39367 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027260 B = 0.003186 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.909326 B = 8785.280995 C = 9401.432307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.723 5.723 16 C 0.517 3.483 17 O -0.542 6.542 18 C -0.145 4.145 19 H 0.107 0.893 20 C -0.102 4.102 21 C -0.157 4.157 22 C 0.056 3.944 23 O -0.376 6.376 24 C 0.072 3.928 25 C 0.142 3.858 26 H 0.253 0.747 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.402 0.598 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.035 0.965 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.104 -19.799 4.944 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.008 3.992 15 N -0.374 5.374 16 C 0.303 3.697 17 O -0.419 6.419 18 C -0.167 4.167 19 H 0.125 0.875 20 C -0.140 4.140 21 C -0.195 4.195 22 C -0.020 4.020 23 O -0.295 6.295 24 C -0.006 4.006 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.237 0.763 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 6.664 -19.928 4.520 21.493 hybrid contribution 0.511 1.116 -0.012 1.228 sum 7.175 -18.811 4.508 20.632 Atomic orbital electron populations 1.69954 1.04895 1.25172 1.56950 1.24810 0.95727 0.97697 1.02203 0.86193 0.78450 0.83168 0.77902 1.21168 1.21586 1.21151 1.19012 0.90398 0.82461 1.44016 0.90525 1.44469 1.01732 0.99849 1.87200 1.21158 0.84313 0.88157 1.01145 1.22861 0.95413 0.99409 0.99680 1.22618 0.98650 0.91996 1.00515 0.90208 1.21415 0.86097 0.93534 0.98148 1.46143 1.28075 1.13525 1.49693 1.20377 0.86202 0.81724 0.81428 1.90694 1.54590 1.59723 1.36938 1.22034 0.97698 0.99225 0.97723 0.87501 1.21396 0.98261 0.93211 1.01094 1.22235 0.99061 1.02012 0.96143 1.22646 1.01616 0.83078 0.94681 1.87975 1.45713 1.25639 1.70150 1.22520 0.88619 0.99552 0.89859 1.21564 0.93949 0.86169 0.96723 0.93686 0.93573 0.93871 0.92215 0.91962 0.91340 0.91662 0.76334 0.90943 0.90610 0.90842 0.90449 0.88691 0.93011 0.88142 0.92466 0.94660 0.96374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.06 10.31 55.49 0.57 -26.49 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.61 -15.32 3.39 -170.05 -0.58 -15.89 16 10 C 0.18 4.25 5.38 -3.04 -0.02 4.23 16 11 C -0.13 -2.43 6.43 -24.87 -0.16 -2.59 16 12 C -0.12 -1.91 3.07 -88.48 -0.27 -2.18 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 14 C 0.13 1.85 5.12 -4.04 -0.02 1.83 16 15 N -0.72 -8.78 5.35 -60.30 -0.32 -9.10 16 16 C 0.52 6.58 7.16 -10.98 -0.08 6.50 16 17 O -0.54 -8.87 15.97 5.56 0.09 -8.78 16 18 C -0.15 -1.41 2.72 -91.63 -0.25 -1.66 16 19 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 20 C -0.10 -0.95 4.63 -26.54 -0.12 -1.07 16 21 C -0.16 -1.13 6.13 -26.58 -0.16 -1.29 16 22 C 0.06 0.42 6.84 37.21 0.25 0.67 16 23 O -0.38 -3.69 10.77 -35.23 -0.38 -4.07 16 24 C 0.07 0.65 6.01 37.21 0.22 0.87 16 25 C 0.14 2.82 6.56 -2.54 -0.02 2.80 16 26 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 28 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 29 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.40 4.16 7.91 -40.82 -0.32 3.84 16 34 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.79 7.65 -51.93 -0.40 0.40 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.02 0.37 7.95 -51.93 -0.41 -0.04 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -32.47 340.66 -8.73 -41.21 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.35 Total: -0.23 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -0.87 Total: 1.23 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.33 Total: -51.49 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.29 Total: -12.85 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.47 -8.73 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028436848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.096 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds