Wall clock time and date at job start Tue Mar 31 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48503 * 109.47231 * 239.99657 * 3 2 1 5 5 H 1.48496 * 109.47168 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46980 * 120.00012 * 3 2 1 7 7 C 1.38815 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99361 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00014 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.65106 * 359.95856 * 9 7 2 11 11 C 1.54370 * 107.28981 * 181.12881 * 10 9 7 12 12 C 1.55157 * 102.91971 * 22.13901 * 11 10 9 13 13 H 1.09003 * 111.00698 * 82.64157 * 12 11 10 14 14 C 1.53005 * 111.00667 * 206.45077 * 12 11 10 15 15 N 1.46496 * 109.47059 * 181.81873 * 14 12 11 16 16 C 1.34774 * 119.99544 * 180.02562 * 15 14 12 17 17 O 1.21279 * 120.00472 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00020 * 180.02562 * 16 15 14 19 19 H 1.09004 * 109.51937 * 299.99710 * 18 16 15 20 20 C 1.53174 * 109.52218 * 179.87395 * 18 16 15 21 21 C 1.53190 * 109.03170 * 183.17264 * 20 18 16 22 22 C 1.53097 * 109.21100 * 56.88522 * 21 20 18 23 23 O 1.42905 * 109.41651 * 302.42571 * 22 21 20 24 24 C 1.42899 * 114.09789 * 61.15699 * 23 22 21 25 25 C 1.47431 * 125.64586 * 180.02562 * 9 7 2 26 26 H 0.97001 * 120.00262 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.88278 * 300.51364 * 10 9 7 28 28 H 1.09001 * 109.88274 * 61.52187 * 10 9 7 29 29 H 1.08992 * 110.70734 * 263.79661 * 11 10 9 30 30 H 1.08997 * 110.75527 * 140.50413 * 11 10 9 31 31 H 1.08996 * 109.46524 * 61.81979 * 14 12 11 32 32 H 1.08992 * 109.46876 * 301.82312 * 14 12 11 33 33 H 0.96994 * 120.00700 * 0.02562 * 15 14 12 34 34 H 1.08992 * 109.54688 * 302.97922 * 20 18 16 35 35 H 1.09005 * 109.54717 * 63.24588 * 20 18 16 36 36 H 1.09002 * 109.47016 * 296.98332 * 21 20 18 37 37 H 1.08997 * 109.57690 * 176.85792 * 21 20 18 38 38 H 1.08997 * 109.47534 * 182.44402 * 22 21 20 39 39 H 1.09003 * 109.48798 * 62.41576 * 22 21 20 40 40 H 1.08994 * 109.48328 * 178.86150 * 24 23 22 41 41 H 1.09003 * 109.48365 * 58.82426 * 24 23 22 42 42 H 1.09000 * 110.36510 * 36.98897 * 25 9 7 43 43 H 1.09005 * 110.45267 * 274.71667 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1375 -2.5327 -0.0014 11 6 -0.4490 -4.0444 0.0262 12 6 0.8520 -4.6561 0.6097 13 1 0.8576 -4.5970 1.6981 14 6 1.0370 -6.1009 0.1412 15 7 2.2496 -6.6586 0.7451 16 6 2.6157 -7.9269 0.4733 17 8 1.9416 -8.6062 -0.2717 18 6 3.8627 -8.5009 1.0950 19 1 4.7262 -7.9078 0.7935 20 6 4.0477 -9.9481 0.6284 21 6 5.2726 -10.5458 1.3279 22 6 5.0876 -10.4418 2.8441 23 8 4.8906 -9.0734 3.2059 24 6 3.7322 -8.4759 2.6201 25 6 1.9335 -3.7312 -0.0017 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5574 -2.0522 0.8823 28 1 -0.5547 -2.0819 -0.9018 29 1 -0.6330 -4.4184 -0.9809 30 1 -1.2984 -4.2520 0.6769 31 1 1.1293 -6.1216 -0.9447 32 1 0.1743 -6.6942 0.4439 33 1 2.7889 -6.1153 1.3406 34 1 3.1625 -10.5299 0.8850 35 1 4.1978 -9.9670 -0.4511 36 1 6.1651 -9.9949 1.0312 37 1 5.3800 -11.5929 1.0450 38 1 5.9756 -10.8262 3.3457 39 1 4.2181 -11.0262 3.1453 40 1 3.6438 -7.4442 2.9604 41 1 2.8449 -9.0345 2.9182 42 1 2.8330 -3.7405 0.6138 43 1 2.1678 -4.0431 -1.0196 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028436848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:16 Heat of formation + Delta-G solvation = -96.503799 kcal Electronic energy + Delta-G solvation = -22438.667323 eV Core-core repulsion = 19096.815394 eV Total energy + Delta-G solvation = -3341.851928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.37879 -39.77228 -39.09187 -36.09000 -34.61198 -34.33089 -32.54316 -31.44376 -29.82959 -27.37793 -26.09193 -25.68544 -24.57734 -22.24777 -21.70213 -21.40011 -20.69758 -18.90627 -18.25619 -17.37713 -17.29239 -16.94925 -16.61283 -16.36301 -16.00548 -15.61925 -15.33623 -15.10774 -14.65205 -14.48271 -13.97789 -13.94884 -13.79678 -13.49742 -13.38877 -13.02489 -12.78300 -12.60947 -12.56432 -12.12783 -12.06815 -11.93577 -11.87605 -11.84263 -11.54585 -11.46083 -11.35756 -10.89147 -10.69487 -10.48658 -10.09081 -8.89678 -7.84743 -5.20383 1.46204 1.49401 1.55674 1.56526 2.14697 2.50028 2.89782 3.33419 3.57460 3.61208 3.73584 3.78029 3.86789 3.98957 4.02621 4.04570 4.16079 4.27879 4.44877 4.45931 4.61968 4.63608 4.70734 4.72696 4.80843 4.82736 4.91907 4.93680 5.04661 5.07200 5.08148 5.13201 5.31023 5.36277 5.45781 5.47436 5.67861 5.78398 6.17166 6.20549 6.51743 7.10698 7.19310 7.78643 8.42885 9.25569 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027260 B = 0.003186 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.909326 B = 8785.280995 C = 9401.432307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.123 4.123 12 C -0.095 4.095 13 H 0.092 0.908 14 C 0.144 3.856 15 N -0.716 5.716 16 C 0.519 3.481 17 O -0.580 6.580 18 C -0.138 4.138 19 H 0.117 0.883 20 C -0.103 4.103 21 C -0.150 4.150 22 C 0.050 3.950 23 O -0.391 6.391 24 C 0.074 3.926 25 C 0.138 3.862 26 H 0.246 0.754 27 H 0.013 0.987 28 H 0.003 0.997 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.413 0.587 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.056 0.944 40 H 0.112 0.888 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.634 -21.165 5.887 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.102 0.898 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.115 4.115 13 H 0.110 0.890 14 C 0.019 3.981 15 N -0.368 5.368 16 C 0.306 3.694 17 O -0.460 6.460 18 C -0.159 4.159 19 H 0.135 0.865 20 C -0.141 4.141 21 C -0.187 4.187 22 C -0.026 4.026 23 O -0.310 6.310 24 C -0.004 4.004 25 C 0.013 3.987 26 H 0.056 0.944 27 H 0.031 0.969 28 H 0.021 0.979 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.250 0.750 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.130 0.870 39 H 0.075 0.925 40 H 0.130 0.870 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 8.235 -21.319 5.482 23.503 hybrid contribution 0.060 1.498 -0.332 1.536 sum 8.295 -19.821 5.149 22.095 Atomic orbital electron populations 1.70187 1.06347 1.25322 1.58297 1.25674 0.96615 1.01119 1.02662 0.85148 0.77125 0.78749 0.78288 1.20436 1.22189 1.19999 1.19452 0.91074 0.83799 1.43010 0.89842 1.44803 1.02502 1.01247 1.87015 1.20929 0.83832 0.91857 0.97639 1.22725 0.97260 0.94940 1.01226 1.22420 0.95879 0.92365 1.00811 0.89015 1.21157 0.87342 0.92052 0.97507 1.46046 1.27586 1.13603 1.49530 1.20844 0.86544 0.81338 0.80673 1.90682 1.55985 1.60645 1.38712 1.22023 0.96265 0.99394 0.98226 0.86468 1.21399 0.98930 0.93018 1.00734 1.22202 0.97867 1.02870 0.95789 1.22842 1.02692 0.82180 0.94878 1.87961 1.45859 1.26816 1.70350 1.22540 0.88550 1.00288 0.88974 1.21753 0.95430 0.84416 0.97137 0.94449 0.96918 0.97894 0.91195 0.89544 0.92468 0.90697 0.75039 0.91947 0.91627 0.90646 0.88829 0.86978 0.92520 0.87029 0.92519 0.93235 0.96572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.66 10.31 21.65 0.22 -57.43 16 2 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 3 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.24 -13.64 10.28 84.04 0.86 -12.78 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 9 N -0.63 -31.95 3.39 -691.92 -2.35 -34.30 16 10 C 0.18 8.96 5.38 86.75 0.47 9.43 16 11 C -0.12 -4.27 6.43 31.80 0.20 -4.07 16 12 C -0.10 -2.88 3.07 -9.41 -0.03 -2.91 16 13 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 14 C 0.14 3.70 5.12 86.38 0.44 4.15 16 15 N -0.72 -15.71 5.35 -463.07 -2.48 -18.18 16 16 C 0.52 12.31 7.16 87.66 0.63 12.94 16 17 O -0.58 -18.39 15.97 -3.02 -0.05 -18.44 16 18 C -0.14 -2.42 2.72 -11.45 -0.03 -2.45 16 19 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 20 C -0.10 -1.77 4.63 30.72 0.14 -1.62 16 21 C -0.15 -1.82 6.13 30.69 0.19 -1.63 16 22 C 0.05 0.62 6.84 72.01 0.49 1.12 16 23 O -0.39 -6.75 10.77 -148.98 -1.60 -8.35 16 24 C 0.07 1.16 6.01 72.01 0.43 1.59 16 25 C 0.14 5.26 6.56 86.85 0.57 5.83 16 26 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.01 0.69 7.38 -2.39 -0.02 0.67 16 28 H 0.00 0.16 7.50 -2.39 -0.02 0.14 16 29 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 30 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.06 1.65 8.03 -2.39 -0.02 1.63 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.41 7.36 7.91 -92.71 -0.73 6.63 16 34 H 0.06 1.19 8.03 -2.39 -0.02 1.17 16 35 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 38 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.11 1.46 7.65 -2.39 -0.02 1.44 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.02 0.64 7.95 -2.38 -0.02 0.63 16 Total: -1.00 -71.45 340.66 0.86 -70.60 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.25 Total: 12.23 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 4.84 Total: 6.19 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -4.60 Total: -109.92 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.65 Total: -26.79 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.45 0.86 -70.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028436848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.906 kcal (2) G-P(sol) polarization free energy of solvation -71.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds