Wall clock time and date at job start Tue Mar 31 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00027 * 2 1 4 4 H 1.48505 * 109.46892 * 95.01711 * 3 2 1 5 5 H 1.48503 * 109.46971 * 215.01297 * 3 2 1 6 6 H 1.48489 * 109.47387 * 335.01601 * 3 2 1 7 7 C 1.38816 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99827 * 173.15235 * 7 2 1 9 9 N 1.36929 * 120.00010 * 353.14196 * 7 2 1 10 10 C 1.47026 * 125.65001 * 5.74803 * 9 7 2 11 11 C 1.54335 * 107.26569 * 178.84843 * 10 9 7 12 12 C 1.55159 * 103.01839 * 338.13606 * 11 10 9 13 13 H 1.09000 * 111.00371 * 277.23005 * 12 11 10 14 14 C 1.53000 * 111.03055 * 153.39706 * 12 11 10 15 15 N 1.46497 * 109.46896 * 181.33285 * 14 12 11 16 16 C 1.34781 * 120.00311 * 180.02562 * 15 14 12 17 17 O 1.21281 * 119.99774 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00089 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.52325 * 300.00164 * 18 16 15 20 20 C 1.53181 * 109.51997 * 179.87524 * 18 16 15 21 21 C 1.53185 * 109.03653 * 183.11298 * 20 18 16 22 22 C 1.53095 * 109.15917 * 56.97982 * 21 20 18 23 23 O 1.42898 * 109.41702 * 302.39265 * 22 21 20 24 24 C 1.42912 * 114.15754 * 61.12561 * 23 22 21 25 25 C 1.47426 * 125.64878 * 186.05116 * 9 7 2 26 26 H 0.97008 * 119.99739 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.88107 * 298.39300 * 10 9 7 28 28 H 1.09000 * 109.88260 * 59.55559 * 10 9 7 29 29 H 1.09005 * 110.84313 * 219.67172 * 11 10 9 30 30 H 1.08994 * 110.66791 * 96.52194 * 11 10 9 31 31 H 1.09004 * 109.47556 * 301.33032 * 14 12 11 32 32 H 1.09004 * 109.47345 * 61.33759 * 14 12 11 33 33 H 0.96995 * 120.00073 * 359.97438 * 15 14 12 34 34 H 1.08991 * 109.54679 * 302.98200 * 20 18 16 35 35 H 1.09007 * 109.54299 * 63.25236 * 20 18 16 36 36 H 1.09000 * 109.52207 * 176.88589 * 21 20 18 37 37 H 1.09003 * 109.52228 * 297.07832 * 21 20 18 38 38 H 1.08995 * 109.47752 * 62.37698 * 22 21 20 39 39 H 1.09000 * 109.47620 * 182.40585 * 22 21 20 40 40 H 1.08996 * 109.53934 * 178.92767 * 24 23 22 41 41 H 1.08997 * 109.42660 * 58.89000 * 24 23 22 42 42 H 1.08999 * 110.36492 * 322.93369 * 25 9 7 43 43 H 1.08999 * 110.36307 * 85.14603 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6037 1.9852 1.3948 5 1 3.4908 1.4730 -0.8033 6 1 1.3988 2.6809 -0.5913 7 6 2.0102 -1.2022 -0.0005 8 1 3.0844 -1.2055 -0.1121 9 7 1.3328 -2.3838 0.1405 10 6 -0.1292 -2.5339 0.1813 11 6 -0.4312 -4.0408 0.3221 12 6 0.8655 -4.7082 -0.2076 13 1 0.8565 -4.7704 -1.2958 14 6 1.0657 -6.0909 0.4162 15 7 2.3131 -6.6754 -0.0821 16 6 2.6974 -7.8987 0.3333 17 8 2.0101 -8.5157 1.1194 18 6 3.9803 -8.5001 -0.1797 19 1 3.9300 -8.5948 -1.2645 20 6 4.1832 -9.8835 0.4461 21 6 5.5268 -10.4513 -0.0218 22 6 6.6436 -9.4740 0.3541 23 8 6.3775 -8.1993 -0.2345 24 6 5.1567 -7.5974 0.2009 25 6 1.9489 -3.7156 0.2830 26 1 -0.4850 0.8401 0.0004 27 1 -0.5338 -1.9913 1.0357 28 1 -0.5666 -2.1547 -0.7423 29 1 -1.2880 -4.3235 -0.2897 30 1 -0.6013 -4.3032 1.3662 31 1 1.1167 -5.9963 1.5009 32 1 0.2292 -6.7357 0.1466 33 1 2.8622 -6.1824 -0.7116 34 1 4.1829 -9.7959 1.5324 35 1 3.3777 -10.5474 0.1322 36 1 5.7048 -11.4116 0.4622 37 1 5.5088 -10.5853 -1.1034 38 1 6.6873 -9.3717 1.4384 39 1 7.5971 -9.8526 -0.0141 40 1 5.0385 -6.6253 -0.2776 41 1 5.1813 -7.4695 1.2831 42 1 2.8408 -3.7896 -0.3391 43 1 2.1980 -3.9086 1.3265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028436850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:20 Heat of formation + Delta-G solvation = -74.506114 kcal Electronic energy + Delta-G solvation = -22522.697245 eV Core-core repulsion = 19181.799208 eV Total energy + Delta-G solvation = -3340.898037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.45651 -38.79945 -37.62268 -34.74150 -33.82916 -32.63186 -31.63977 -29.75013 -28.27080 -25.83181 -25.18001 -24.58513 -23.30585 -21.18787 -20.33171 -19.96319 -19.55901 -17.48781 -16.80449 -16.59381 -16.26269 -15.87078 -15.38526 -15.01817 -14.69183 -14.53894 -13.99625 -13.89832 -13.58307 -13.26585 -12.98826 -12.76048 -12.36921 -12.01967 -11.87060 -11.74837 -11.43777 -11.42565 -11.22299 -10.92442 -10.80160 -10.71693 -10.44205 -10.17595 -10.04973 -9.91785 -9.88722 -9.66858 -9.61815 -9.00658 -8.59553 -6.84634 -5.74108 -3.06739 2.56142 3.13362 3.39479 3.44486 3.46063 3.57468 4.33152 4.47858 4.52248 4.54302 4.61883 4.81920 4.96052 5.07266 5.12041 5.21958 5.29930 5.37848 5.39993 5.46867 5.51500 5.54764 5.64453 5.67711 5.81856 5.87294 5.99063 6.02130 6.03956 6.31812 6.41516 6.46721 6.51080 6.65675 6.83673 6.88652 7.49201 7.53942 7.61970 7.80703 8.18050 8.24329 9.20074 9.80782 10.47208 11.38026 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024237 B = 0.003433 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.987166 B = 8154.668972 C = 9173.328556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.132 3.868 15 N -0.723 5.723 16 C 0.517 3.483 17 O -0.542 6.542 18 C -0.144 4.144 19 H 0.106 0.894 20 C -0.102 4.102 21 C -0.156 4.156 22 C 0.056 3.944 23 O -0.376 6.376 24 C 0.071 3.929 25 C 0.143 3.857 26 H 0.253 0.747 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.402 0.598 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.487 -19.172 -1.065 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.360 4.360 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.008 3.992 15 N -0.374 5.374 16 C 0.303 3.697 17 O -0.420 6.420 18 C -0.166 4.166 19 H 0.124 0.876 20 C -0.140 4.140 21 C -0.194 4.194 22 C -0.021 4.021 23 O -0.295 6.295 24 C -0.006 4.006 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.237 0.763 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.043 -19.272 -0.646 20.893 hybrid contribution 0.395 1.044 -0.151 1.127 sum 8.438 -18.228 -0.797 20.102 Atomic orbital electron populations 1.69976 1.04943 1.25135 1.56639 1.24829 0.95704 0.97703 1.02098 0.86160 0.78616 0.83436 0.77697 1.21518 1.20721 1.21715 1.19034 0.91082 0.82591 1.43263 0.90467 1.44470 1.01692 1.01079 1.86005 1.21158 0.84415 0.88262 1.00956 1.22855 0.95446 0.99128 0.99926 1.22621 0.98649 0.92389 1.00157 0.90223 1.21411 0.85213 0.93550 0.98994 1.46142 1.25466 1.18043 1.47787 1.20383 0.86869 0.81284 0.81206 1.90694 1.55551 1.61125 1.34588 1.22027 0.93725 0.97759 1.03083 0.87641 1.21401 0.97224 0.94166 1.01193 1.22235 0.95312 0.99427 1.02430 1.22645 0.98247 0.83494 0.97681 1.87970 1.39340 1.33540 1.68616 1.22540 0.82568 0.95559 0.99981 1.21554 0.93841 0.85953 0.97039 0.93709 0.93642 0.93865 0.91985 0.92220 0.91336 0.91689 0.76322 0.90876 0.90698 0.90468 0.90902 0.92968 0.88705 0.88009 0.92335 0.94708 0.96309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 10.36 55.49 0.57 -26.37 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.98 29.56 -169.99 -5.02 16.96 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.40 10.26 -15.06 -0.15 -6.56 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.61 -15.24 3.39 -170.06 -0.58 -15.82 16 10 C 0.18 4.23 5.38 -3.06 -0.02 4.22 16 11 C -0.13 -2.42 6.42 -24.89 -0.16 -2.58 16 12 C -0.12 -1.91 3.11 -88.47 -0.27 -2.19 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 14 C 0.13 1.85 5.13 -4.04 -0.02 1.83 16 15 N -0.72 -8.80 5.31 -60.29 -0.32 -9.12 16 16 C 0.52 6.59 7.16 -10.99 -0.08 6.51 16 17 O -0.54 -8.88 15.97 5.56 0.09 -8.79 16 18 C -0.14 -1.41 2.72 -91.63 -0.25 -1.66 16 19 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 20 C -0.10 -0.95 4.62 -26.54 -0.12 -1.07 16 21 C -0.16 -1.13 6.14 -26.59 -0.16 -1.30 16 22 C 0.06 0.44 6.84 37.21 0.25 0.69 16 23 O -0.38 -3.86 10.76 -35.23 -0.38 -4.24 16 24 C 0.07 0.68 6.01 37.20 0.22 0.91 16 25 C 0.14 2.79 6.40 -2.53 -0.02 2.78 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.05 1.21 7.39 -51.93 -0.38 0.83 16 28 H 0.04 1.14 7.53 -51.93 -0.39 0.75 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 31 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.40 4.19 7.81 -40.82 -0.32 3.87 16 34 H 0.07 0.75 8.03 -51.93 -0.42 0.34 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.89 7.65 -51.93 -0.40 0.50 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.02 0.38 8.01 -51.93 -0.42 -0.03 16 LS Contribution 340.62 15.07 5.13 5.13 Total: -1.00 -32.37 340.62 -8.74 -41.10 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.36 Total: -0.13 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -0.87 Total: 1.28 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.32 Total: -51.31 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.29 Total: -13.03 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.37 -8.74 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028436850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.403 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds