Wall clock time and date at job start Tue Mar 31 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00027 * 2 1 4 4 H 1.48505 * 109.46892 * 95.01711 * 3 2 1 5 5 H 1.48503 * 109.46971 * 215.01297 * 3 2 1 6 6 H 1.48489 * 109.47387 * 335.01601 * 3 2 1 7 7 C 1.38816 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99827 * 173.15235 * 7 2 1 9 9 N 1.36929 * 120.00010 * 353.14196 * 7 2 1 10 10 C 1.47026 * 125.65001 * 5.74803 * 9 7 2 11 11 C 1.54335 * 107.26569 * 178.84843 * 10 9 7 12 12 C 1.55159 * 103.01839 * 338.13606 * 11 10 9 13 13 H 1.09000 * 111.00371 * 277.23005 * 12 11 10 14 14 C 1.53000 * 111.03055 * 153.39706 * 12 11 10 15 15 N 1.46497 * 109.46896 * 181.33285 * 14 12 11 16 16 C 1.34781 * 120.00311 * 180.02562 * 15 14 12 17 17 O 1.21281 * 119.99774 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00089 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.52325 * 300.00164 * 18 16 15 20 20 C 1.53181 * 109.51997 * 179.87524 * 18 16 15 21 21 C 1.53185 * 109.03653 * 183.11298 * 20 18 16 22 22 C 1.53095 * 109.15917 * 56.97982 * 21 20 18 23 23 O 1.42898 * 109.41702 * 302.39265 * 22 21 20 24 24 C 1.42912 * 114.15754 * 61.12561 * 23 22 21 25 25 C 1.47426 * 125.64878 * 186.05116 * 9 7 2 26 26 H 0.97008 * 119.99739 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.88107 * 298.39300 * 10 9 7 28 28 H 1.09000 * 109.88260 * 59.55559 * 10 9 7 29 29 H 1.09005 * 110.84313 * 219.67172 * 11 10 9 30 30 H 1.08994 * 110.66791 * 96.52194 * 11 10 9 31 31 H 1.09004 * 109.47556 * 301.33032 * 14 12 11 32 32 H 1.09004 * 109.47345 * 61.33759 * 14 12 11 33 33 H 0.96995 * 120.00073 * 359.97438 * 15 14 12 34 34 H 1.08991 * 109.54679 * 302.98200 * 20 18 16 35 35 H 1.09007 * 109.54299 * 63.25236 * 20 18 16 36 36 H 1.09000 * 109.52207 * 176.88589 * 21 20 18 37 37 H 1.09003 * 109.52228 * 297.07832 * 21 20 18 38 38 H 1.08995 * 109.47752 * 62.37698 * 22 21 20 39 39 H 1.09000 * 109.47620 * 182.40585 * 22 21 20 40 40 H 1.08996 * 109.53934 * 178.92767 * 24 23 22 41 41 H 1.08997 * 109.42660 * 58.89000 * 24 23 22 42 42 H 1.08999 * 110.36492 * 322.93369 * 25 9 7 43 43 H 1.08999 * 110.36307 * 85.14603 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6037 1.9852 1.3948 5 1 3.4908 1.4730 -0.8033 6 1 1.3988 2.6809 -0.5913 7 6 2.0102 -1.2022 -0.0005 8 1 3.0844 -1.2055 -0.1121 9 7 1.3328 -2.3838 0.1405 10 6 -0.1292 -2.5339 0.1813 11 6 -0.4312 -4.0408 0.3221 12 6 0.8655 -4.7082 -0.2076 13 1 0.8565 -4.7704 -1.2958 14 6 1.0657 -6.0909 0.4162 15 7 2.3131 -6.6754 -0.0821 16 6 2.6974 -7.8987 0.3333 17 8 2.0101 -8.5157 1.1194 18 6 3.9803 -8.5001 -0.1797 19 1 3.9300 -8.5948 -1.2645 20 6 4.1832 -9.8835 0.4461 21 6 5.5268 -10.4513 -0.0218 22 6 6.6436 -9.4740 0.3541 23 8 6.3775 -8.1993 -0.2345 24 6 5.1567 -7.5974 0.2009 25 6 1.9489 -3.7156 0.2830 26 1 -0.4850 0.8401 0.0004 27 1 -0.5338 -1.9913 1.0357 28 1 -0.5666 -2.1547 -0.7423 29 1 -1.2880 -4.3235 -0.2897 30 1 -0.6013 -4.3032 1.3662 31 1 1.1167 -5.9963 1.5009 32 1 0.2292 -6.7357 0.1466 33 1 2.8622 -6.1824 -0.7116 34 1 4.1829 -9.7959 1.5324 35 1 3.3777 -10.5474 0.1322 36 1 5.7048 -11.4116 0.4622 37 1 5.5088 -10.5853 -1.1034 38 1 6.6873 -9.3717 1.4384 39 1 7.5971 -9.8526 -0.0141 40 1 5.0385 -6.6253 -0.2776 41 1 5.1813 -7.4695 1.2831 42 1 2.8408 -3.7896 -0.3391 43 1 2.1980 -3.9086 1.3265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028436850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:19 Heat of formation + Delta-G solvation = -96.578483 kcal Electronic energy + Delta-G solvation = -22523.654375 eV Core-core repulsion = 19181.799208 eV Total energy + Delta-G solvation = -3341.855167 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38077 -39.77448 -39.09108 -36.08711 -34.61129 -34.32829 -32.54869 -31.44670 -29.82678 -27.38040 -26.09170 -25.68825 -24.58769 -22.26484 -21.67726 -21.39551 -20.68680 -18.91142 -18.27196 -17.42341 -17.24281 -16.93806 -16.61064 -16.32135 -16.05715 -15.62791 -15.44524 -14.99260 -14.60816 -14.50737 -14.07347 -13.90446 -13.77914 -13.50009 -13.37960 -13.04487 -12.77162 -12.64862 -12.55845 -12.13026 -12.02527 -11.95231 -11.87261 -11.84538 -11.54555 -11.44930 -11.36330 -10.89339 -10.68566 -10.48803 -10.09084 -8.88718 -7.86033 -5.20316 1.46279 1.48815 1.56223 1.56481 2.14835 2.49956 2.88671 3.32845 3.57255 3.60965 3.73214 3.78180 3.87053 3.99487 4.03002 4.03981 4.15696 4.27166 4.44397 4.46415 4.61546 4.62843 4.71034 4.73349 4.79946 4.83775 4.91556 4.94227 5.04939 5.07121 5.08158 5.12579 5.31389 5.36976 5.45942 5.48045 5.68222 5.77410 6.16539 6.20499 6.51650 7.10542 7.19243 7.78643 8.43401 9.24995 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024237 B = 0.003433 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.987166 B = 8154.668972 C = 9173.328556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.267 1.267 6 H -0.296 1.296 7 C -0.244 4.244 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.182 3.818 11 C -0.123 4.123 12 C -0.096 4.096 13 H 0.090 0.910 14 C 0.144 3.856 15 N -0.716 5.716 16 C 0.519 3.481 17 O -0.580 6.580 18 C -0.135 4.135 19 H 0.123 0.877 20 C -0.103 4.103 21 C -0.148 4.148 22 C 0.049 3.951 23 O -0.391 6.391 24 C 0.072 3.928 25 C 0.138 3.862 26 H 0.246 0.754 27 H 0.005 0.995 28 H 0.009 0.991 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.413 0.587 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.091 -20.696 -1.817 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.191 1.191 6 H -0.223 1.223 7 C -0.373 4.373 8 H 0.103 0.897 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.115 4.115 13 H 0.109 0.891 14 C 0.020 3.980 15 N -0.368 5.368 16 C 0.306 3.694 17 O -0.460 6.460 18 C -0.157 4.157 19 H 0.141 0.859 20 C -0.141 4.141 21 C -0.186 4.186 22 C -0.027 4.027 23 O -0.309 6.309 24 C -0.005 4.005 25 C 0.013 3.987 26 H 0.055 0.945 27 H 0.024 0.976 28 H 0.027 0.973 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.249 0.751 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.690 -20.822 -1.412 23.009 hybrid contribution -0.073 1.480 0.106 1.486 sum 9.617 -19.342 -1.306 21.640 Atomic orbital electron populations 1.70200 1.06387 1.25285 1.58089 1.25680 0.96577 1.01100 1.02645 0.85122 0.77701 0.79100 0.77601 1.21400 1.19130 1.22252 1.19468 0.91716 0.83900 1.42167 0.89748 1.44803 1.02460 1.02491 1.85810 1.20923 0.83965 0.91860 0.97529 1.22717 0.97311 0.94786 1.01356 1.22425 0.95953 0.92480 1.00691 0.89146 1.21158 0.86441 0.92272 0.98177 1.46047 1.24963 1.18033 1.47737 1.20850 0.87326 0.80887 0.80355 1.90682 1.56916 1.62086 1.36325 1.22008 0.92021 0.97755 1.03902 0.85934 1.21407 0.98392 0.93963 1.00339 1.22197 0.93670 0.99857 1.02867 1.22854 0.99280 0.82727 0.97877 1.87955 1.39322 1.34662 1.69003 1.22533 0.82442 0.95881 0.99662 1.21748 0.95294 0.84284 0.97357 0.94455 0.97627 0.97255 0.89626 0.91196 0.92356 0.90802 0.75054 0.92286 0.91236 0.88824 0.90308 0.92850 0.86909 0.87202 0.93059 0.93118 0.96412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.50 10.36 21.65 0.22 -57.28 16 2 C -0.07 -3.82 5.48 84.86 0.47 -3.35 16 3 Si 0.98 45.63 29.56 68.60 2.03 47.65 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.24 -13.53 10.26 84.04 0.86 -12.66 16 8 H 0.08 4.43 7.84 -2.91 -0.02 4.41 16 9 N -0.63 -31.77 3.39 -691.95 -2.35 -34.12 16 10 C 0.18 8.93 5.38 86.73 0.47 9.40 16 11 C -0.12 -4.28 6.42 31.79 0.20 -4.07 16 12 C -0.10 -2.90 3.11 -9.40 -0.03 -2.93 16 13 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 14 C 0.14 3.70 5.13 86.38 0.44 4.15 16 15 N -0.72 -15.74 5.31 -463.06 -2.46 -18.20 16 16 C 0.52 12.30 7.16 87.65 0.63 12.93 16 17 O -0.58 -18.37 15.97 -3.03 -0.05 -18.41 16 18 C -0.14 -2.37 2.72 -11.45 -0.03 -2.41 16 19 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 20 C -0.10 -1.76 4.62 30.72 0.14 -1.62 16 21 C -0.15 -1.79 6.14 30.69 0.19 -1.60 16 22 C 0.05 0.65 6.84 72.01 0.49 1.14 16 23 O -0.39 -7.18 10.76 -148.98 -1.60 -8.78 16 24 C 0.07 1.25 6.01 72.01 0.43 1.68 16 25 C 0.14 5.22 6.40 86.85 0.56 5.78 16 26 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 27 H 0.01 0.31 7.39 -2.38 -0.02 0.29 16 28 H 0.01 0.51 7.53 -2.39 -0.02 0.49 16 29 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 30 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 31 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 32 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.41 7.42 7.81 -92.71 -0.72 6.69 16 34 H 0.06 1.17 8.03 -2.39 -0.02 1.15 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.68 7.65 -2.39 -0.02 1.66 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.02 0.70 8.01 -2.39 -0.02 0.68 16 Total: -1.00 -71.21 340.62 0.87 -70.34 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.26 Total: 12.37 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 4.82 Total: 6.43 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.58 Total: -109.60 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -1.65 Total: -27.19 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.21 0.87 -70.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028436850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.235 kcal (2) G-P(sol) polarization free energy of solvation -71.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds