Wall clock time and date at job start Tue Mar 31 2020 06:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86791 * 120.00113 * 2 1 4 4 H 1.48500 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47221 * 300.00368 * 3 2 1 6 6 H 1.48499 * 109.47284 * 60.00666 * 3 2 1 7 7 C 1.38815 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00043 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64917 * 359.96353 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.16150 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 C 1.53001 * 110.87088 * 153.93501 * 12 11 10 15 15 N 1.46496 * 109.47222 * 177.54808 * 14 12 11 16 16 C 1.34779 * 119.99713 * 180.02562 * 15 14 12 17 17 O 1.21273 * 120.00438 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99721 * 179.97438 * 16 15 14 19 19 H 1.09004 * 109.47925 * 54.99634 * 18 16 15 20 20 C 1.53100 * 109.48228 * 294.97765 * 18 16 15 21 21 C 1.53175 * 109.16524 * 182.42150 * 20 18 16 22 22 C 1.53181 * 109.04455 * 56.96117 * 21 20 18 23 23 C 1.53091 * 109.16227 * 303.02690 * 22 21 20 24 24 O 1.42898 * 109.41796 * 57.60899 * 23 22 21 25 25 C 1.47018 * 125.64978 * 180.02562 * 9 7 2 26 26 H 0.96996 * 119.99991 * 359.97438 * 1 2 3 27 27 H 1.08998 * 110.36876 * 323.00467 * 10 9 7 28 28 H 1.09009 * 110.36320 * 85.21140 * 10 9 7 29 29 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 30 30 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 31 31 H 1.08999 * 109.47061 * 297.54951 * 14 12 11 32 32 H 1.09006 * 109.46767 * 57.54604 * 14 12 11 33 33 H 0.97003 * 120.00294 * 359.97438 * 15 14 12 34 34 H 1.09003 * 109.51542 * 302.31803 * 20 18 16 35 35 H 1.08997 * 109.52018 * 62.50050 * 20 18 16 36 36 H 1.08997 * 109.53247 * 297.09580 * 21 20 18 37 37 H 1.09000 * 109.61902 * 176.88057 * 21 20 18 38 38 H 1.08998 * 109.51859 * 183.12545 * 22 21 20 39 39 H 1.09000 * 109.57251 * 62.96478 * 22 21 20 40 40 H 1.09007 * 109.48143 * 297.62329 * 23 22 21 41 41 H 1.08998 * 109.48814 * 177.60149 * 23 22 21 42 42 H 1.08998 * 109.88222 * 59.49315 * 25 9 7 43 43 H 1.09004 * 109.88300 * 298.32681 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5332 0.0008 11 6 -0.4012 -3.9322 0.6132 12 6 0.7783 -4.7524 0.0272 13 1 0.5449 -5.0982 -0.9798 14 6 1.1256 -5.9333 0.9360 15 7 2.2014 -6.7188 0.3264 16 6 2.6739 -7.8146 0.9528 17 8 2.2088 -8.1501 2.0214 18 6 3.7802 -8.6231 0.3254 19 1 4.6296 -7.9737 0.1133 20 6 3.2785 -9.2495 -0.9784 21 6 4.3884 -10.1179 -1.5787 22 6 4.8088 -11.1728 -0.5506 23 6 5.2515 -10.4719 0.7364 24 8 4.1839 -9.6573 1.2250 25 6 1.9316 -3.7275 -0.0005 26 1 -0.4850 0.8400 0.0004 27 1 -0.5989 -1.7587 0.6165 28 1 -0.5284 -2.4851 -1.0172 29 1 -1.3589 -4.3327 0.2806 30 1 -0.3506 -3.8978 1.7014 31 1 1.4529 -5.5607 1.9067 32 1 0.2452 -6.5626 1.0665 33 1 2.5732 -6.4507 -0.5285 34 1 2.4040 -9.8669 -0.7729 35 1 3.0117 -8.4611 -1.6822 36 1 5.2448 -9.4923 -1.8303 37 1 4.0207 -10.6116 -2.4782 38 1 5.6364 -11.7598 -0.9488 39 1 3.9660 -11.8300 -0.3362 40 1 6.1203 -9.8468 0.5296 41 1 5.5114 -11.2189 1.4864 42 1 2.5585 -3.8507 0.8826 43 1 2.5276 -3.8647 -0.9029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028472669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:50 Heat of formation + Delta-G solvation = -69.485606 kcal Electronic energy + Delta-G solvation = -22445.983278 eV Core-core repulsion = 19105.302946 eV Total energy + Delta-G solvation = -3340.680332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37126 -38.71544 -37.53082 -34.73202 -33.90934 -32.63610 -31.68122 -29.76194 -28.28981 -26.25400 -25.15691 -24.22589 -23.30757 -20.96580 -20.55946 -19.95341 -19.64847 -17.56188 -16.86476 -16.75950 -15.91794 -15.59954 -15.45084 -14.87666 -14.72203 -14.58317 -14.28854 -13.85849 -13.64218 -13.10089 -12.95348 -12.63296 -12.51866 -11.81395 -11.78379 -11.70744 -11.58927 -11.49386 -11.40386 -10.96166 -10.83031 -10.79217 -10.41845 -10.12314 -10.01177 -9.88509 -9.81935 -9.63729 -9.45898 -8.96846 -8.66547 -6.84737 -5.66873 -3.08544 2.61586 2.80139 3.38740 3.44178 3.46729 3.84850 4.37284 4.44340 4.46078 4.47871 4.60218 4.78707 4.82226 5.08316 5.11916 5.22053 5.24969 5.34215 5.39275 5.42082 5.51514 5.54484 5.64007 5.67330 5.69323 5.87792 5.89609 6.06281 6.10748 6.33789 6.42644 6.53614 6.57970 6.70030 6.85046 6.89697 7.50171 7.53320 7.61852 7.84582 8.24733 8.35286 9.20838 9.81818 10.46526 11.37206 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.003111 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.790096 B = 8997.088890 C = 9378.164477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.076 0.924 14 C 0.134 3.866 15 N -0.722 5.722 16 C 0.517 3.483 17 O -0.523 6.523 18 C 0.074 3.926 19 H 0.084 0.916 20 C -0.146 4.146 21 C -0.121 4.121 22 C -0.159 4.159 23 C 0.059 3.941 24 O -0.354 6.354 25 C 0.141 3.859 26 H 0.252 0.748 27 H 0.107 0.893 28 H 0.012 0.988 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.401 0.599 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.024 0.976 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.379 -20.173 -3.854 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.011 3.989 15 N -0.375 5.375 16 C 0.302 3.698 17 O -0.398 6.398 18 C 0.013 3.987 19 H 0.102 0.898 20 C -0.184 4.184 21 C -0.159 4.159 22 C -0.196 4.196 23 C -0.018 4.018 24 O -0.272 6.272 25 C 0.015 3.985 26 H 0.062 0.938 27 H 0.125 0.875 28 H 0.030 0.970 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.235 0.765 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.116 0.884 42 H 0.042 0.958 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 6.919 -20.212 -2.877 21.557 hybrid contribution 0.830 0.978 -0.847 1.537 sum 7.749 -19.234 -3.723 21.068 Atomic orbital electron populations 1.69805 1.04896 1.24675 1.57698 1.24794 0.95742 0.97752 1.02450 0.85996 0.78640 0.83592 0.77258 1.20541 1.21766 1.21708 1.19125 0.90521 0.82487 1.42953 0.90485 1.44515 1.02010 0.99737 1.86834 1.21934 0.84660 0.92529 0.98206 1.23004 0.95514 0.98537 1.00365 1.22447 0.98335 0.93956 0.98629 0.90565 1.21470 0.88998 0.91563 0.96899 1.45976 1.39302 1.27324 1.24918 1.20094 0.83445 0.80918 0.85379 1.90718 1.58820 1.68970 1.21303 1.21908 0.96529 0.90262 0.90036 0.89840 1.22147 0.99773 1.00679 0.95805 1.21588 0.98415 0.97479 0.98399 1.22223 1.02365 0.98749 0.96310 1.22662 0.89111 0.93850 0.96201 1.88070 1.53401 1.44398 1.41345 1.21335 0.93487 0.85989 0.97692 0.93764 0.87543 0.96985 0.92089 0.91790 0.91132 0.91564 0.76497 0.90340 0.90036 0.91417 0.90927 0.90690 0.90844 0.92967 0.88405 0.95762 0.96442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.60 -15.35 3.39 -170.07 -0.58 -15.93 16 10 C 0.15 3.63 5.89 -2.53 -0.01 3.61 16 11 C -0.13 -2.48 6.54 -24.58 -0.16 -2.64 16 12 C -0.11 -1.87 2.98 -88.79 -0.26 -2.13 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 14 C 0.13 1.98 5.01 -4.04 -0.02 1.96 16 15 N -0.72 -9.23 5.39 -60.29 -0.33 -9.56 16 16 C 0.52 7.40 7.18 -10.98 -0.08 7.32 16 17 O -0.52 -9.86 16.51 -14.29 -0.24 -10.10 16 18 C 0.07 0.82 3.05 -27.83 -0.08 0.73 16 19 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 20 C -0.15 -1.22 5.37 -26.59 -0.14 -1.37 16 21 C -0.12 -0.80 6.03 -26.55 -0.16 -0.96 16 22 C -0.16 -1.07 6.14 -26.59 -0.16 -1.23 16 23 C 0.06 0.49 6.84 37.20 0.25 0.74 16 24 O -0.35 -4.49 9.94 -55.09 -0.55 -5.04 16 25 C 0.14 2.83 6.64 -3.07 -0.02 2.81 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.11 2.89 5.87 -51.93 -0.31 2.58 16 28 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 31 H 0.07 1.17 8.00 -51.93 -0.42 0.75 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.40 4.15 8.25 -40.82 -0.34 3.82 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.56 7.99 -51.93 -0.41 0.15 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.02 0.50 7.73 -51.93 -0.40 0.10 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -33.50 341.51 -9.44 -42.95 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.33 Total: -0.28 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.11 Total: 2.06 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.34 Total: -51.74 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.78 Total: -15.13 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.50 -9.44 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028472669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.538 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds