Wall clock time and date at job start Tue Mar 31 2020 06:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86791 * 120.00113 * 2 1 4 4 H 1.48500 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47221 * 300.00368 * 3 2 1 6 6 H 1.48499 * 109.47284 * 60.00666 * 3 2 1 7 7 C 1.38815 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00043 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64917 * 359.96353 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.16150 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 C 1.53001 * 110.87088 * 153.93501 * 12 11 10 15 15 N 1.46496 * 109.47222 * 177.54808 * 14 12 11 16 16 C 1.34779 * 119.99713 * 180.02562 * 15 14 12 17 17 O 1.21273 * 120.00438 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99721 * 179.97438 * 16 15 14 19 19 H 1.09004 * 109.47925 * 54.99634 * 18 16 15 20 20 C 1.53100 * 109.48228 * 294.97765 * 18 16 15 21 21 C 1.53175 * 109.16524 * 182.42150 * 20 18 16 22 22 C 1.53181 * 109.04455 * 56.96117 * 21 20 18 23 23 C 1.53091 * 109.16227 * 303.02690 * 22 21 20 24 24 O 1.42898 * 109.41796 * 57.60899 * 23 22 21 25 25 C 1.47018 * 125.64978 * 180.02562 * 9 7 2 26 26 H 0.96996 * 119.99991 * 359.97438 * 1 2 3 27 27 H 1.08998 * 110.36876 * 323.00467 * 10 9 7 28 28 H 1.09009 * 110.36320 * 85.21140 * 10 9 7 29 29 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 30 30 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 31 31 H 1.08999 * 109.47061 * 297.54951 * 14 12 11 32 32 H 1.09006 * 109.46767 * 57.54604 * 14 12 11 33 33 H 0.97003 * 120.00294 * 359.97438 * 15 14 12 34 34 H 1.09003 * 109.51542 * 302.31803 * 20 18 16 35 35 H 1.08997 * 109.52018 * 62.50050 * 20 18 16 36 36 H 1.08997 * 109.53247 * 297.09580 * 21 20 18 37 37 H 1.09000 * 109.61902 * 176.88057 * 21 20 18 38 38 H 1.08998 * 109.51859 * 183.12545 * 22 21 20 39 39 H 1.09000 * 109.57251 * 62.96478 * 22 21 20 40 40 H 1.09007 * 109.48143 * 297.62329 * 23 22 21 41 41 H 1.08998 * 109.48814 * 177.60149 * 23 22 21 42 42 H 1.08998 * 109.88222 * 59.49315 * 25 9 7 43 43 H 1.09004 * 109.88300 * 298.32681 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5332 0.0008 11 6 -0.4012 -3.9322 0.6132 12 6 0.7783 -4.7524 0.0272 13 1 0.5449 -5.0982 -0.9798 14 6 1.1256 -5.9333 0.9360 15 7 2.2014 -6.7188 0.3264 16 6 2.6739 -7.8146 0.9528 17 8 2.2088 -8.1501 2.0214 18 6 3.7802 -8.6231 0.3254 19 1 4.6296 -7.9737 0.1133 20 6 3.2785 -9.2495 -0.9784 21 6 4.3884 -10.1179 -1.5787 22 6 4.8088 -11.1728 -0.5506 23 6 5.2515 -10.4719 0.7364 24 8 4.1839 -9.6573 1.2250 25 6 1.9316 -3.7275 -0.0005 26 1 -0.4850 0.8400 0.0004 27 1 -0.5989 -1.7587 0.6165 28 1 -0.5284 -2.4851 -1.0172 29 1 -1.3589 -4.3327 0.2806 30 1 -0.3506 -3.8978 1.7014 31 1 1.4529 -5.5607 1.9067 32 1 0.2452 -6.5626 1.0665 33 1 2.5732 -6.4507 -0.5285 34 1 2.4040 -9.8669 -0.7729 35 1 3.0117 -8.4611 -1.6822 36 1 5.2448 -9.4923 -1.8303 37 1 4.0207 -10.6116 -2.4782 38 1 5.6364 -11.7598 -0.9488 39 1 3.9660 -11.8300 -0.3362 40 1 6.1203 -9.8468 0.5296 41 1 5.5114 -11.2189 1.4864 42 1 2.5585 -3.8507 0.8826 43 1 2.5276 -3.8647 -0.9029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028472669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:50 Heat of formation + Delta-G solvation = -91.724828 kcal Electronic energy + Delta-G solvation = -22446.947643 eV Core-core repulsion = 19105.302946 eV Total energy + Delta-G solvation = -3341.644697 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33729 -39.78541 -39.01027 -36.10868 -34.70389 -34.26108 -32.62439 -31.45595 -29.83698 -27.56262 -26.55307 -25.01150 -24.65860 -22.27293 -21.57116 -21.26061 -20.99611 -18.95301 -18.40829 -17.76808 -17.00870 -16.73352 -16.56626 -16.46100 -15.74932 -15.57469 -15.43777 -15.22862 -14.71396 -14.28116 -14.26308 -13.68189 -13.61710 -13.54311 -13.35437 -13.13794 -12.80658 -12.70117 -12.52065 -12.18582 -11.97598 -11.94852 -11.86261 -11.82102 -11.59011 -11.40599 -11.33602 -10.76630 -10.72500 -10.47072 -10.13150 -8.87343 -7.77343 -5.21287 1.46894 1.47785 1.52879 1.57970 1.83573 2.49783 3.04176 3.32554 3.56678 3.65797 3.77193 3.80850 3.91302 3.99243 4.03537 4.06376 4.07433 4.21207 4.45743 4.49848 4.64296 4.65724 4.70607 4.80743 4.81382 4.87042 4.91914 5.03389 5.05946 5.09830 5.13624 5.16967 5.32960 5.37626 5.42000 5.48966 5.67042 5.83633 6.11428 6.32615 6.53027 7.11806 7.18531 7.79806 8.43062 9.24828 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.003111 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.790096 B = 8997.088890 C = 9378.164477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.238 4.238 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.123 4.123 12 C -0.092 4.092 13 H 0.100 0.900 14 C 0.144 3.856 15 N -0.709 5.709 16 C 0.514 3.486 17 O -0.576 6.576 18 C 0.076 3.924 19 H 0.105 0.895 20 C -0.142 4.142 21 C -0.119 4.119 22 C -0.156 4.156 23 C 0.051 3.949 24 O -0.392 6.392 25 C 0.137 3.863 26 H 0.246 0.754 27 H 0.069 0.931 28 H -0.008 1.008 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.416 0.584 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.019 0.981 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.863 -21.514 -5.328 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.162 4.162 12 C -0.111 4.111 13 H 0.119 0.881 14 C 0.020 3.980 15 N -0.363 5.363 16 C 0.301 3.699 17 O -0.455 6.455 18 C 0.015 3.985 19 H 0.123 0.877 20 C -0.180 4.180 21 C -0.156 4.156 22 C -0.194 4.194 23 C -0.025 4.025 24 O -0.311 6.311 25 C 0.012 3.988 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.010 0.990 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.253 0.747 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.037 0.963 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.438 -21.577 -4.388 23.580 hybrid contribution 0.397 1.367 -0.372 1.471 sum 8.835 -20.210 -4.760 22.565 Atomic orbital electron populations 1.70062 1.06199 1.24913 1.58753 1.25633 0.96652 1.00996 1.02852 0.84990 0.78123 0.79404 0.76700 1.19078 1.21844 1.22006 1.19495 0.91019 0.83870 1.42276 0.90173 1.44839 1.02844 1.01040 1.86809 1.21726 0.84090 0.94808 0.96685 1.22849 0.97893 0.95544 0.99939 1.22283 0.95690 0.93120 1.00048 0.88134 1.21205 0.89916 0.91194 0.95635 1.45821 1.38575 1.26635 1.25250 1.20788 0.83637 0.80859 0.84663 1.90691 1.60736 1.70349 1.23689 1.21982 0.95874 0.90241 0.90377 0.87711 1.22157 0.99866 1.01218 0.94752 1.21621 0.98207 0.97308 0.98513 1.22211 1.02736 0.98758 0.95667 1.22911 0.88516 0.93891 0.97217 1.88018 1.54905 1.45262 1.42946 1.21521 0.94766 0.84617 0.97910 0.94372 0.91268 0.98982 0.89159 0.92125 0.93110 0.90716 0.74741 0.91868 0.88204 0.90037 0.89590 0.88516 0.91960 0.91561 0.87868 0.96273 0.94948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.63 10.09 21.65 0.22 -56.41 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 3 Si 0.98 45.62 29.55 68.60 2.03 47.65 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.24 -13.28 10.27 84.03 0.86 -12.41 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -31.99 3.39 -691.98 -2.35 -34.34 16 10 C 0.15 7.37 5.89 86.85 0.51 7.88 16 11 C -0.12 -4.38 6.54 31.99 0.21 -4.17 16 12 C -0.09 -2.81 2.98 -9.61 -0.03 -2.84 16 13 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 14 C 0.14 4.01 5.01 86.38 0.43 4.45 16 15 N -0.71 -16.65 5.39 -463.06 -2.50 -19.15 16 16 C 0.51 14.14 7.18 87.66 0.63 14.77 16 17 O -0.58 -21.80 16.51 15.98 0.26 -21.53 16 18 C 0.08 1.54 3.05 29.88 0.09 1.63 16 19 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 20 C -0.14 -2.02 5.37 30.69 0.16 -1.85 16 21 C -0.12 -1.18 6.03 30.71 0.19 -1.00 16 22 C -0.16 -1.72 6.14 30.69 0.19 -1.54 16 23 C 0.05 0.75 6.84 72.01 0.49 1.24 16 24 O -0.39 -9.60 9.94 -129.99 -1.29 -10.90 16 25 C 0.14 5.30 6.64 86.73 0.58 5.87 16 26 H 0.25 14.26 8.31 -92.71 -0.77 13.48 16 27 H 0.07 3.89 5.87 -2.39 -0.01 3.88 16 28 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 29 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.06 2.20 8.05 -2.39 -0.02 2.18 16 31 H 0.05 1.64 8.00 -2.39 -0.02 1.63 16 32 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.42 7.31 8.25 -92.71 -0.76 6.54 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 1.03 7.99 -2.39 -0.02 1.01 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 42 H 0.02 0.77 7.73 -2.39 -0.02 0.75 16 43 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -74.94 341.51 1.37 -73.56 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.22 Total: 12.53 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 4.78 Total: 8.58 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -4.63 Total: -109.90 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -1.03 Total: -32.43 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -74.94 1.37 -73.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028472669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.160 kcal (2) G-P(sol) polarization free energy of solvation -74.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds