Wall clock time and date at job start Tue Mar 31 2020 06:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47021 * 125.64958 * 359.96780 * 9 7 2 11 11 C 1.54331 * 107.26526 * 178.84865 * 10 9 7 12 12 C 1.55157 * 103.02099 * 338.14342 * 11 10 9 13 13 H 1.09007 * 111.00065 * 277.22946 * 12 11 10 14 14 C 1.53000 * 111.00451 * 153.38454 * 12 11 10 15 15 N 1.46498 * 109.46943 * 181.34924 * 14 12 11 16 16 C 1.34777 * 119.99530 * 179.97438 * 15 14 12 17 17 O 1.21276 * 120.00622 * 0.02562 * 16 15 14 18 18 C 1.50708 * 119.99708 * 179.97438 * 16 15 14 19 19 H 1.08998 * 109.48198 * 305.02134 * 18 16 15 20 20 C 1.53085 * 109.47999 * 65.06076 * 18 16 15 21 21 C 1.53179 * 109.16330 * 177.59175 * 20 18 16 22 22 C 1.53177 * 109.03544 * 303.01832 * 21 20 18 23 23 C 1.53089 * 109.16477 * 56.98069 * 22 21 20 24 24 O 1.42903 * 109.41250 * 302.38858 * 23 22 21 25 25 C 1.47423 * 125.64463 * 180.27811 * 9 7 2 26 26 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.88257 * 298.39786 * 10 9 7 28 28 H 1.09008 * 109.88006 * 59.55999 * 10 9 7 29 29 H 1.09003 * 110.84977 * 219.67319 * 11 10 9 30 30 H 1.08998 * 110.66654 * 96.52690 * 11 10 9 31 31 H 1.08998 * 109.46956 * 301.34619 * 14 12 11 32 32 H 1.09001 * 109.47574 * 61.34764 * 14 12 11 33 33 H 0.96993 * 120.00578 * 359.97438 * 15 14 12 34 34 H 1.08998 * 109.52080 * 297.49623 * 20 18 16 35 35 H 1.08998 * 109.52753 * 57.68601 * 20 18 16 36 36 H 1.09003 * 109.54697 * 183.14994 * 21 20 18 37 37 H 1.08994 * 109.61618 * 62.92724 * 21 20 18 38 38 H 1.09006 * 109.52279 * 297.07384 * 22 21 20 39 39 H 1.08999 * 109.57369 * 176.91979 * 22 21 20 40 40 H 1.09001 * 109.47996 * 182.40987 * 23 22 21 41 41 H 1.08993 * 109.48857 * 62.37607 * 23 22 21 42 42 H 1.09000 * 110.36923 * 322.92896 * 25 9 7 43 43 H 1.08995 * 110.37096 * 85.14705 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1374 -2.5328 0.0140 11 6 -0.4483 -4.0443 -0.0103 12 6 0.8518 -4.6592 -0.5925 13 1 0.8560 -4.6051 -1.6812 14 6 1.0371 -6.1015 -0.1167 15 7 2.2880 -6.6376 -0.6589 16 6 2.6612 -7.9001 -0.3701 17 8 1.9614 -8.5924 0.3382 18 6 3.9478 -8.4518 -0.9283 19 1 3.9468 -8.3492 -2.0135 20 6 5.1317 -7.6778 -0.3430 21 6 6.4372 -8.2830 -0.8682 22 6 6.4793 -9.7708 -0.5062 23 6 5.2433 -10.4641 -1.0852 24 8 4.0646 -9.8330 -0.5805 25 6 1.9336 -3.7310 0.0139 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5501 -2.0818 0.9165 28 1 -0.5616 -2.0547 -0.8691 29 1 -1.2987 -4.2551 -0.6587 30 1 -0.6326 -4.4153 0.9979 31 1 1.0746 -6.1228 0.9724 32 1 0.2010 -6.7089 -0.4634 33 1 2.8476 -6.0841 -1.2257 34 1 5.0679 -6.6322 -0.6442 35 1 5.1100 -7.7465 0.7446 36 1 7.2853 -7.7725 -0.4119 37 1 6.4833 -8.1699 -1.9513 38 1 6.4848 -9.8818 0.5782 39 1 7.3793 -10.2227 -0.9231 40 1 5.2461 -11.5146 -0.7943 41 1 5.2593 -10.3877 -2.1723 42 1 2.8328 -3.7437 -0.6020 43 1 2.1688 -4.0356 1.0337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028472673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:53 Heat of formation + Delta-G solvation = -93.152094 kcal Electronic energy + Delta-G solvation = -22517.940971 eV Core-core repulsion = 19176.234384 eV Total energy + Delta-G solvation = -3341.706588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32384 -39.77067 -39.00489 -36.08655 -34.69538 -34.25265 -32.62149 -31.44854 -29.86032 -27.54448 -26.54374 -25.01086 -24.67062 -22.19284 -21.55341 -21.35061 -20.99527 -18.94259 -18.37581 -17.72998 -17.05020 -16.65706 -16.62536 -16.14587 -15.95986 -15.59762 -15.40674 -15.18136 -14.76977 -14.42356 -14.00634 -13.82958 -13.67250 -13.61406 -13.38402 -13.00909 -12.78015 -12.61809 -12.50690 -12.19148 -12.01901 -11.95275 -11.88487 -11.82824 -11.53500 -11.45231 -11.37619 -10.73816 -10.69297 -10.46713 -10.11262 -8.88701 -7.83890 -5.19479 1.46948 1.48869 1.54071 1.57389 1.84592 2.50588 3.05207 3.34619 3.57955 3.61894 3.77457 3.85172 3.90754 4.01767 4.03554 4.04763 4.07647 4.21396 4.45237 4.50497 4.62348 4.64826 4.71682 4.80636 4.81406 4.86787 4.92815 5.03706 5.06729 5.08830 5.10183 5.17534 5.33719 5.37535 5.45913 5.47171 5.68560 5.78985 6.12314 6.21245 6.53893 7.11428 7.19407 7.79458 8.43842 9.26719 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.003398 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.072800 B = 8237.810216 C = 9223.767494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.284 1.284 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.095 4.095 13 H 0.093 0.907 14 C 0.145 3.855 15 N -0.710 5.710 16 C 0.515 3.485 17 O -0.575 6.575 18 C 0.078 3.922 19 H 0.111 0.889 20 C -0.145 4.145 21 C -0.119 4.119 22 C -0.157 4.157 23 C 0.052 3.948 24 O -0.391 6.391 25 C 0.138 3.862 26 H 0.246 0.754 27 H 0.002 0.998 28 H 0.013 0.987 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.415 0.585 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.296 -18.521 -5.835 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.370 4.370 8 H 0.103 0.897 9 N -0.356 5.356 10 C 0.058 3.942 11 C -0.163 4.163 12 C -0.114 4.114 13 H 0.111 0.889 14 C 0.021 3.979 15 N -0.363 5.363 16 C 0.301 3.699 17 O -0.454 6.454 18 C 0.017 3.983 19 H 0.129 0.871 20 C -0.183 4.183 21 C -0.156 4.156 22 C -0.195 4.195 23 C -0.024 4.024 24 O -0.310 6.310 25 C 0.013 3.987 26 H 0.055 0.945 27 H 0.020 0.980 28 H 0.032 0.968 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.252 0.748 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 11.629 -18.900 -5.208 22.794 hybrid contribution 0.337 1.616 0.021 1.650 sum 11.965 -17.284 -5.187 21.652 Atomic orbital electron populations 1.70192 1.06377 1.25209 1.58424 1.25673 0.96601 1.01133 1.02765 0.85076 0.77619 0.79088 0.77536 1.21068 1.22435 1.19297 1.19492 0.91105 0.83709 1.42742 0.89679 1.44817 1.02460 1.01295 1.86986 1.20912 0.83925 0.91739 0.97620 1.22727 0.97287 0.95026 1.01216 1.22418 0.96010 0.92105 1.00885 0.88877 1.21167 0.86101 0.92448 0.98196 1.45824 1.24636 1.13380 1.52490 1.20763 0.87190 0.81658 0.80283 1.90690 1.55981 1.59580 1.39133 1.21962 0.91994 0.83791 1.00512 0.87130 1.22164 0.94318 1.00659 1.01184 1.21614 0.96333 0.95318 1.02347 1.22218 0.99139 0.96413 1.01682 1.22903 0.83433 0.97354 0.98695 1.88020 1.43913 1.21696 1.77417 1.21747 0.95430 0.84295 0.97204 0.94498 0.97961 0.96824 0.89582 0.91295 0.92486 0.90801 0.74805 0.88586 0.92359 0.90055 0.89696 0.92252 0.88447 0.87794 0.91206 0.92869 0.96557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.46 10.31 21.65 0.22 -57.23 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 3 Si 0.98 45.31 29.55 68.60 2.03 47.34 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.24 -13.32 10.28 84.03 0.86 -12.45 16 8 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.63 -31.63 3.39 -691.96 -2.35 -33.98 16 10 C 0.18 8.97 5.38 86.73 0.47 9.44 16 11 C -0.12 -4.34 6.42 31.79 0.20 -4.14 16 12 C -0.09 -2.87 3.11 -9.40 -0.03 -2.90 16 13 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 14 C 0.14 3.88 5.12 86.38 0.44 4.33 16 15 N -0.71 -16.38 5.37 -463.06 -2.49 -18.87 16 16 C 0.51 13.87 7.18 87.66 0.63 14.50 16 17 O -0.58 -21.27 16.51 15.97 0.26 -21.01 16 18 C 0.08 1.56 3.05 29.88 0.09 1.65 16 19 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 20 C -0.15 -2.33 5.37 30.68 0.16 -2.16 16 21 C -0.12 -1.34 6.03 30.71 0.19 -1.15 16 22 C -0.16 -1.84 6.14 30.68 0.19 -1.65 16 23 C 0.05 0.75 6.84 72.01 0.49 1.24 16 24 O -0.39 -9.36 9.94 -129.99 -1.29 -10.65 16 25 C 0.14 5.20 6.40 86.86 0.56 5.76 16 26 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.00 0.12 7.51 -2.39 -0.02 0.10 16 28 H 0.01 0.74 7.38 -2.38 -0.02 0.72 16 29 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 31 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.42 7.37 8.19 -92.71 -0.76 6.61 16 34 H 0.10 1.26 7.99 -2.39 -0.02 1.24 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 39 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.02 0.64 8.01 -2.39 -0.02 0.62 16 Total: -1.00 -75.12 342.26 1.33 -73.79 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.22 Total: 11.61 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 4.72 Total: 9.00 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -4.61 Total: -110.08 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -1.03 Total: -31.66 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.12 1.33 -73.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028472673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.363 kcal (2) G-P(sol) polarization free energy of solvation -75.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds