Wall clock time and date at job start Tue Mar 31 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48499 * 109.46896 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47378 * 149.99559 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 C 1.52995 * 114.38874 * 139.66656 * 11 10 9 13 13 N 1.46504 * 109.47304 * 91.31420 * 12 11 10 14 14 C 1.34776 * 119.99953 * 180.02562 * 13 12 11 15 15 O 1.21283 * 120.00247 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99759 * 180.02562 * 14 13 12 17 17 C 1.53007 * 109.47030 * 299.99757 * 16 14 13 18 18 C 1.52998 * 109.47004 * 179.97438 * 17 16 14 19 19 C 1.53008 * 109.47197 * 60.00121 * 18 17 16 20 20 O 1.42894 * 109.47007 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.46899 * 299.99889 * 19 18 17 22 22 C 1.52995 * 109.47110 * 179.97438 * 16 14 13 23 23 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 24 24 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 25 25 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 26 26 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 27 27 H 1.09006 * 114.20377 * 272.47966 * 11 10 9 28 28 H 1.09001 * 109.46965 * 211.31494 * 12 11 10 29 29 H 1.09002 * 109.47141 * 331.31179 * 12 11 10 30 30 H 0.96997 * 119.99823 * 0.02562 * 13 12 11 31 31 H 1.09002 * 109.47447 * 59.99741 * 16 14 13 32 32 H 1.08992 * 109.47129 * 300.00190 * 17 16 14 33 33 H 1.08997 * 109.46956 * 60.00469 * 17 16 14 34 34 H 1.09002 * 109.47520 * 300.00013 * 18 17 16 35 35 H 1.09001 * 109.47110 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.46563 * 59.99889 * 19 18 17 37 37 H 0.96699 * 114.00250 * 299.99869 * 20 19 18 38 38 H 1.08992 * 109.47174 * 299.99702 * 21 19 18 39 39 H 1.08997 * 109.46810 * 179.97438 * 21 19 18 40 40 H 1.08997 * 109.47406 * 299.99701 * 22 16 14 41 41 H 1.09004 * 109.47469 * 60.00016 * 22 16 14 42 42 H 1.09005 * 113.46156 * 321.64040 * 23 9 7 43 43 H 1.08994 * 113.46837 * 92.01680 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 6 -0.3798 -5.3467 -0.1901 13 7 -1.5799 -5.5786 -0.9977 14 6 -2.3755 -6.6342 -0.7348 15 8 -2.0978 -7.3924 0.1701 16 6 -3.6097 -6.8730 -1.5659 17 6 -4.5445 -5.6673 -1.4490 18 6 -5.7972 -5.9095 -2.2933 19 6 -6.5164 -7.1631 -1.7910 20 8 -7.6866 -7.3889 -2.5792 21 6 -5.5816 -8.3686 -1.9079 22 6 -4.3283 -8.1267 -1.0634 23 6 1.6797 -3.8155 0.0005 24 1 -0.4849 0.8401 -0.0004 25 1 -0.4897 -2.9528 1.0077 26 1 -0.7251 -2.1596 -0.6083 27 1 0.3751 -4.0237 -1.7798 28 1 0.2863 -6.2055 -0.2742 29 1 -0.6648 -5.2088 0.8530 30 1 -1.8018 -4.9724 -1.7217 31 1 -3.3243 -7.0116 -2.6088 32 1 -4.8299 -5.5287 -0.4063 33 1 -4.0323 -4.7744 -1.8073 34 1 -5.5114 -6.0479 -3.3361 35 1 -6.4629 -5.0504 -2.2104 36 1 -6.8021 -7.0246 -0.7482 37 1 -8.3253 -6.6633 -2.5519 38 1 -5.2959 -8.5070 -2.9506 39 1 -6.0938 -9.2616 -1.5496 40 1 -3.6622 -8.9854 -1.1471 41 1 -4.6137 -7.9885 -0.0205 42 1 2.5452 -4.0479 -0.6200 43 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031635218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:51 Heat of formation + Delta-G solvation = -54.485454 kcal Electronic energy + Delta-G solvation = -22210.826408 eV Core-core repulsion = 18870.796532 eV Total energy + Delta-G solvation = -3340.029876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.28198 -38.69804 -38.02332 -35.62168 -34.45668 -32.25559 -31.09586 -30.31845 -28.64111 -25.95981 -24.61721 -23.39329 -22.97865 -21.92618 -20.60919 -19.99488 -19.00986 -17.52483 -17.10400 -16.68040 -16.10986 -15.67573 -15.05353 -14.84267 -14.69607 -14.38510 -14.03205 -13.75630 -13.42473 -13.28064 -12.78733 -12.61974 -12.53975 -12.37750 -11.86805 -11.59628 -11.48475 -11.35573 -11.30086 -11.03742 -10.98731 -10.81321 -10.60804 -10.45065 -10.07646 -10.03945 -9.81379 -9.58733 -9.26025 -8.85867 -8.79677 -6.91935 -5.80926 -3.13227 2.73280 3.31336 3.36604 3.41469 3.43409 3.87748 4.36065 4.42144 4.42388 4.63585 4.82475 4.91743 4.98678 5.11258 5.14017 5.20651 5.22095 5.25557 5.35265 5.48506 5.62192 5.66665 5.71656 5.74991 5.82964 5.86005 5.89934 6.00904 6.04179 6.15100 6.21940 6.36982 6.50707 6.62650 6.73837 7.16707 7.30470 7.34584 7.50199 7.66166 7.93784 8.34818 9.00101 9.66480 10.60205 11.36707 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026731 B = 0.003073 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.206855 B = 9108.062971 C = 9986.977783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.218 4.218 8 H 0.081 0.919 9 N -0.611 5.611 10 C 0.162 3.838 11 C -0.159 4.159 12 C 0.133 3.867 13 N -0.721 5.721 14 C 0.514 3.486 15 O -0.547 6.547 16 C -0.109 4.109 17 C -0.110 4.110 18 C -0.149 4.149 19 C 0.102 3.898 20 O -0.571 6.571 21 C -0.112 4.112 22 C -0.096 4.096 23 C 0.128 3.872 24 H 0.253 0.747 25 H 0.025 0.975 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.401 0.599 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.377 0.623 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.484 -13.858 -5.736 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.345 4.345 8 H 0.099 0.901 9 N -0.337 5.337 10 C 0.036 3.964 11 C -0.179 4.179 12 C 0.009 3.991 13 N -0.372 5.372 14 C 0.299 3.701 15 O -0.424 6.424 16 C -0.130 4.130 17 C -0.148 4.148 18 C -0.187 4.187 19 C 0.043 3.957 20 O -0.376 6.376 21 C -0.149 4.149 22 C -0.134 4.134 23 C 0.001 3.999 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.236 0.764 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.224 0.776 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.059 0.941 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.889 -14.566 -5.188 19.505 hybrid contribution 0.135 1.888 -0.073 1.894 sum -11.755 -12.678 -5.261 18.072 Atomic orbital electron populations 1.69825 1.05031 1.25348 1.56562 1.24802 0.95720 0.97557 1.02438 0.86094 0.78596 0.83287 0.77634 1.21483 1.21604 1.20647 1.18947 0.90174 0.81448 1.43953 0.90088 1.45554 1.02846 0.99319 1.85954 1.22143 0.88871 0.89096 0.96272 1.23602 0.98949 0.94793 1.00563 1.21353 0.85168 0.97550 0.95041 1.46102 1.26239 1.28458 1.36395 1.20572 0.84334 0.80680 0.84474 1.90685 1.73599 1.46334 1.31830 1.21396 0.93542 0.97432 1.00658 1.21491 0.95205 0.96863 1.01260 1.22256 0.97481 0.98165 1.00784 1.21882 0.85209 0.94841 0.93754 1.86502 1.31715 1.47197 1.72216 1.21510 0.94925 0.97261 1.01237 1.21309 0.95423 0.96738 0.99900 1.22310 0.94187 0.86707 0.96711 0.93662 0.95731 0.91155 0.88940 0.91938 0.91446 0.76430 0.88449 0.91002 0.90557 0.90822 0.91253 0.92599 0.77585 0.91148 0.90999 0.90488 0.90902 0.94052 0.94765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 11.51 55.49 0.64 -26.39 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.22 -6.11 10.75 -15.06 -0.16 -6.27 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -15.62 3.78 -184.77 -0.70 -16.32 16 10 C 0.16 3.68 6.98 -8.51 -0.06 3.62 16 11 C -0.16 -2.79 4.09 -90.12 -0.37 -3.16 16 12 C 0.13 2.03 5.60 -4.04 -0.02 2.00 16 13 N -0.72 -9.40 5.45 -60.29 -0.33 -9.73 16 14 C 0.51 6.87 7.15 -10.99 -0.08 6.79 16 15 O -0.55 -9.37 15.98 5.55 0.09 -9.28 16 16 C -0.11 -1.06 2.52 -91.77 -0.23 -1.29 16 17 C -0.11 -0.96 5.10 -26.73 -0.14 -1.09 16 18 C -0.15 -1.11 5.54 -26.73 -0.15 -1.26 16 19 C 0.10 0.83 3.47 -26.73 -0.09 0.73 16 20 O -0.57 -4.83 13.32 -35.23 -0.47 -5.29 16 21 C -0.11 -0.96 5.57 -26.70 -0.15 -1.10 16 22 C -0.10 -0.93 4.50 -26.70 -0.12 -1.05 16 23 C 0.13 2.57 8.26 -8.52 -0.07 2.50 16 24 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.58 7.89 -51.93 -0.41 0.17 16 26 H 0.07 1.75 7.12 -51.93 -0.37 1.38 16 27 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.13 7.82 -51.93 -0.41 0.72 16 30 H 0.40 4.46 7.89 -40.82 -0.32 4.14 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.64 7.56 -51.93 -0.39 0.25 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.38 1.68 9.08 45.56 0.41 2.10 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 41 H 0.07 0.78 8.10 -51.93 -0.42 0.35 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.67 8.11 -51.93 -0.42 0.25 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -33.60 345.17 -8.85 -42.45 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.52 Total: 2.33 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.74 Total: 0.08 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.39 Total: -52.43 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.38 Total: -14.58 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.60 -8.85 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031635218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.035 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds