Wall clock time and date at job start Tue Mar 31 2020 06:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.47067 * 136.05626 * 359.63192 * 9 7 2 11 11 C 1.53760 * 87.88554 * 152.96394 * 10 9 7 12 12 C 1.53006 * 114.08424 * 139.77927 * 11 10 9 13 13 N 1.46499 * 109.46931 * 91.56218 * 12 11 10 14 14 C 1.34775 * 119.99835 * 180.02562 * 13 12 11 15 15 O 1.21273 * 120.00257 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99816 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.54057 * 300.16140 * 16 14 13 18 18 C 1.54209 * 109.53747 * 179.97438 * 16 14 13 19 19 C 1.46285 * 111.98583 * 162.60214 * 18 16 14 20 20 C 1.54111 * 112.20042 * 61.42082 * 19 18 16 21 21 O 1.40325 * 108.70326 * 280.43240 * 20 19 18 22 22 C 1.43993 * 116.57809 * 95.04362 * 21 20 19 23 23 C 1.50623 * 109.53970 * 60.41024 * 16 14 13 24 24 C 1.47065 * 136.05658 * 180.02562 * 9 7 2 25 25 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 26 26 H 1.09001 * 113.46603 * 267.69372 * 10 9 7 27 27 H 1.08995 * 113.46768 * 38.13227 * 10 9 7 28 28 H 1.08999 * 114.39588 * 272.67216 * 11 10 9 29 29 H 1.08995 * 109.46611 * 211.55720 * 12 11 10 30 30 H 1.08997 * 109.47158 * 331.56461 * 12 11 10 31 31 H 0.97000 * 120.00113 * 359.97438 * 13 12 11 32 32 H 1.08995 * 108.98090 * 283.25260 * 18 16 14 33 33 H 1.09001 * 108.97665 * 42.04177 * 18 16 14 34 34 H 1.09001 * 108.93264 * 182.11461 * 19 18 16 35 35 H 1.08993 * 108.93713 * 300.71605 * 19 18 16 36 36 H 1.08998 * 109.60567 * 40.20091 * 20 19 18 37 37 H 1.09002 * 109.60257 * 160.51916 * 20 19 18 38 38 H 1.09007 * 108.69389 * 78.90878 * 22 21 20 39 39 H 1.08998 * 108.69697 * 196.87749 * 22 21 20 40 40 H 1.09001 * 108.88125 * 330.97265 * 23 16 14 41 41 H 1.09004 * 108.88582 * 89.43011 * 23 16 14 42 42 H 1.08997 * 113.46865 * 321.86117 * 24 9 7 43 43 H 1.09001 * 113.46857 * 92.24672 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 -0.0878 -2.7948 0.0181 11 6 0.3384 -4.0935 -0.6862 12 6 -0.3821 -5.3443 -0.1787 13 7 -1.5826 -5.5774 -0.9854 14 6 -2.3799 -6.6307 -0.7183 15 8 -2.1033 -7.3858 0.1895 16 6 -3.6145 -6.8708 -1.5484 17 1 -4.2786 -6.0099 -1.4715 18 6 -4.3420 -8.1311 -1.0382 19 6 -5.7253 -8.1936 -1.5097 20 6 -5.8142 -8.2570 -3.0470 21 8 -5.6415 -6.9629 -3.5614 22 6 -4.3076 -6.6040 -3.9679 23 6 -3.2213 -7.0788 -2.9875 24 6 1.6798 -3.8154 0.0065 25 1 -0.4849 0.8401 0.0004 26 1 -0.4840 -2.9547 1.0208 27 1 -0.7284 -2.1583 -0.5923 28 1 0.3739 -4.0253 -1.7735 29 1 0.2826 -6.2043 -0.2596 30 1 -0.6669 -5.2018 0.8637 31 1 -1.8041 -4.9732 -1.7112 32 1 -3.8080 -9.0146 -1.3878 33 1 -4.3403 -8.1245 0.0518 34 1 -6.2020 -9.0800 -1.0911 35 1 -6.2583 -7.3092 -1.1608 36 1 -5.0317 -8.9109 -3.4319 37 1 -6.7904 -8.6425 -3.3413 38 1 -4.1107 -7.0423 -4.9464 39 1 -4.2491 -5.5191 -4.0560 40 1 -2.3022 -6.5273 -3.1853 41 1 -3.0361 -8.1403 -3.1527 42 1 2.5452 -4.0486 -0.6137 43 1 1.7502 -4.2439 1.0063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031640998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:19 Heat of formation + Delta-G solvation = -36.655044 kcal Electronic energy + Delta-G solvation = -22429.195053 eV Core-core repulsion = 19089.938361 eV Total energy + Delta-G solvation = -3339.256692 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45115 -38.92716 -38.08794 -34.92798 -34.48726 -32.90182 -32.14862 -29.04321 -27.48323 -26.40990 -25.40814 -24.59251 -22.34158 -21.52034 -21.05558 -20.07255 -19.03056 -17.39283 -17.08146 -16.73312 -16.08626 -15.78907 -15.28360 -15.16541 -14.79266 -14.35166 -14.00516 -13.76600 -13.68072 -13.39704 -13.15431 -12.98837 -12.47246 -12.16086 -11.86891 -11.50701 -11.43922 -11.30093 -11.04878 -10.98021 -10.89388 -10.80132 -10.71887 -10.59953 -10.04170 -9.82799 -9.79723 -9.49623 -9.26171 -8.85860 -8.79921 -6.91205 -5.80142 -3.12703 2.72546 3.27031 3.36953 3.42230 3.44861 3.58773 4.33228 4.42679 4.47165 4.58918 4.69977 4.77381 4.98982 5.08422 5.20575 5.22254 5.24178 5.25227 5.35627 5.41362 5.46824 5.65270 5.68047 5.74382 5.78947 5.83137 5.86398 6.01446 6.06577 6.13150 6.21747 6.36750 6.50426 6.62791 6.73660 7.10649 7.17917 7.30684 7.51468 7.65175 7.94557 8.33964 9.00765 9.67142 10.60722 11.37407 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.003123 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.784293 B = 8963.533745 C = 9496.069328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.218 4.218 8 H 0.082 0.918 9 N -0.611 5.611 10 C 0.161 3.839 11 C -0.159 4.159 12 C 0.133 3.867 13 N -0.722 5.722 14 C 0.515 3.485 15 O -0.546 6.546 16 C -0.105 4.105 17 H 0.105 0.895 18 C -0.101 4.101 19 C -0.151 4.151 20 C 0.065 3.935 21 O -0.384 6.384 22 C 0.064 3.936 23 C -0.149 4.149 24 C 0.128 3.872 25 H 0.253 0.747 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.401 0.599 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.364 -16.677 -7.817 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.345 4.345 8 H 0.100 0.900 9 N -0.337 5.337 10 C 0.035 3.965 11 C -0.179 4.179 12 C 0.009 3.991 13 N -0.373 5.373 14 C 0.300 3.700 15 O -0.423 6.423 16 C -0.126 4.126 17 H 0.123 0.877 18 C -0.139 4.139 19 C -0.188 4.188 20 C -0.012 4.012 21 O -0.303 6.303 22 C -0.012 4.012 23 C -0.187 4.187 24 C 0.001 3.999 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.236 0.764 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.217 -16.701 -7.169 20.850 hybrid contribution 0.652 1.070 -0.093 1.256 sum -9.565 -15.631 -7.262 19.712 Atomic orbital electron populations 1.69834 1.05028 1.25264 1.56561 1.24807 0.95719 0.97566 1.02435 0.86022 0.78729 0.83582 0.77296 1.20430 1.21649 1.21704 1.18997 0.90192 0.81438 1.43888 0.90042 1.45576 1.02865 0.99323 1.85904 1.22216 0.88902 0.89123 0.96253 1.23666 0.98925 0.94797 1.00523 1.21363 0.85073 0.97569 0.95081 1.46086 1.26227 1.28633 1.36321 1.20547 0.84377 0.80639 0.84400 1.90674 1.73374 1.46495 1.31804 1.21070 0.95615 1.01422 0.94480 0.87710 1.20419 0.95075 0.96022 1.02362 1.21157 0.97588 1.03210 0.96874 1.22374 1.01241 0.84801 0.92802 1.87474 1.28048 1.32091 1.82659 1.22968 0.81486 1.01070 0.95695 1.21992 0.99871 1.03207 0.93636 1.22311 0.94152 0.86741 0.96700 0.93680 0.95706 0.91050 0.88888 0.91966 0.91425 0.76411 0.91873 0.90424 0.90994 0.90912 0.93016 0.89913 0.92817 0.88928 0.89914 0.91000 0.94051 0.94785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.16 11.50 55.49 0.64 -26.53 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.12 10.75 -15.06 -0.16 -6.29 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.61 -15.66 3.78 -184.58 -0.70 -16.35 16 10 C 0.16 3.68 6.99 -8.37 -0.06 3.62 16 11 C -0.16 -2.80 4.12 -89.96 -0.37 -3.17 16 12 C 0.13 2.04 5.59 -4.04 -0.02 2.02 16 13 N -0.72 -9.51 5.18 -60.30 -0.31 -9.83 16 14 C 0.51 7.03 7.07 -10.98 -0.08 6.95 16 15 O -0.55 -9.48 15.64 5.56 0.09 -9.40 16 16 C -0.10 -1.08 2.23 -92.33 -0.21 -1.28 16 17 H 0.10 1.07 7.83 -51.93 -0.41 0.66 16 18 C -0.10 -1.01 4.30 -29.29 -0.13 -1.13 16 19 C -0.15 -1.23 5.47 -29.34 -0.16 -1.39 16 20 C 0.07 0.50 6.38 37.74 0.24 0.74 16 21 O -0.38 -3.68 10.17 -33.69 -0.34 -4.02 16 22 C 0.06 0.50 6.67 37.60 0.25 0.75 16 23 C -0.15 -1.23 4.81 -27.48 -0.13 -1.37 16 24 C 0.13 2.58 8.25 -8.49 -0.07 2.51 16 25 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.03 0.59 7.87 -51.93 -0.41 0.19 16 27 H 0.07 1.80 7.10 -51.93 -0.37 1.43 16 28 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.14 7.80 -51.93 -0.40 0.74 16 31 H 0.40 4.52 7.96 -40.82 -0.32 4.19 16 32 H 0.06 0.62 7.59 -51.93 -0.39 0.23 16 33 H 0.08 0.90 7.43 -51.93 -0.39 0.52 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 36 H 0.05 0.36 6.98 -51.93 -0.36 0.00 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.65 6.98 -51.93 -0.36 0.29 16 41 H 0.07 0.58 6.83 -51.93 -0.35 0.22 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -33.04 339.00 -8.65 -41.70 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.12 Total: 0.66 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -0.99 Total: 1.63 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.37 Total: -52.71 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.26 Total: -13.42 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.04 -8.65 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031640998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.043 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds