Wall clock time and date at job start Tue Mar 31 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48498 * 109.46914 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47113 * 300.00149 * 3 2 1 6 6 H 1.48498 * 109.47222 * 59.99982 * 3 2 1 7 7 C 1.38811 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 195.67720 * 7 2 1 9 9 N 1.36930 * 120.00248 * 15.67983 * 7 2 1 10 10 C 1.44577 * 118.64791 * 206.51596 * 9 7 2 11 11 C 1.54860 * 109.60699 * 270.70681 * 10 9 7 12 12 C 1.47095 * 110.32188 * 288.73428 * 11 10 9 13 13 C 1.52566 * 114.32730 * 62.79560 * 12 11 10 14 14 C 1.50888 * 109.35723 * 274.98979 * 13 12 11 15 15 H 1.08997 * 109.26384 * 331.76182 * 14 13 12 16 16 N 1.46496 * 109.36656 * 212.07937 * 14 13 12 17 17 C 1.34778 * 120.00309 * 154.36190 * 16 14 13 18 18 O 1.21279 * 119.99341 * 0.02562 * 17 16 14 19 19 C 1.50693 * 120.00140 * 180.02562 * 17 16 14 20 20 H 1.08998 * 110.43862 * 298.90404 * 19 17 16 21 21 C 1.54814 * 110.48874 * 176.22142 * 19 17 16 22 22 C 1.54986 * 102.09629 * 220.44178 * 21 19 17 23 23 O 1.44385 * 103.49256 * 37.02216 * 22 21 19 24 24 C 1.43753 * 106.97106 * 319.94268 * 23 22 21 25 25 C 1.47606 * 118.64438 * 26.49456 * 9 7 2 26 26 H 0.97000 * 120.00067 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.44630 * 30.74285 * 10 9 7 28 28 H 1.08999 * 109.45560 * 150.66128 * 10 9 7 29 29 H 1.09004 * 109.32967 * 48.98917 * 11 10 9 30 30 H 1.09001 * 109.33344 * 168.64273 * 11 10 9 31 31 H 1.08995 * 108.51571 * 184.05213 * 12 11 10 32 32 H 1.09001 * 108.50982 * 301.69976 * 12 11 10 33 33 H 1.08998 * 109.49139 * 155.02895 * 13 12 11 34 34 H 1.08998 * 109.49118 * 34.95524 * 13 12 11 35 35 H 0.97004 * 120.00318 * 334.64189 * 16 14 13 36 36 H 1.09001 * 110.90379 * 338.64338 * 21 19 17 37 37 H 1.09003 * 110.90958 * 102.23953 * 21 19 17 38 38 H 1.09000 * 110.61939 * 278.52563 * 22 21 19 39 39 H 1.08999 * 110.75986 * 155.58474 * 22 21 19 40 40 H 1.09000 * 109.87480 * 267.08944 * 24 23 22 41 41 H 1.08997 * 109.88062 * 145.93733 * 24 23 22 42 42 H 1.08995 * 108.94789 * 17.20926 * 25 9 7 43 43 H 1.08996 * 108.87955 * 258.52648 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0602 -1.2197 0.2522 9 7 1.3638 -2.3658 -0.3215 10 6 1.8689 -3.6099 0.2145 11 6 2.9226 -4.2029 -0.7532 12 6 2.2708 -4.7068 -1.9717 13 6 1.5629 -3.6349 -2.7949 14 6 0.1716 -3.4238 -2.2505 15 1 -0.1776 -4.3471 -1.7882 16 7 -0.7289 -3.0587 -3.3469 17 6 -2.0485 -3.3150 -3.2489 18 8 -2.4904 -3.8475 -2.2529 19 6 -2.9746 -2.9399 -4.3770 20 1 -2.9539 -1.8631 -4.5444 21 6 -4.4164 -3.4165 -4.0756 22 6 -4.8832 -3.9346 -5.4597 23 8 -3.6954 -4.5443 -6.0093 24 6 -2.5891 -3.6936 -5.6646 25 6 0.1797 -2.2983 -1.2002 26 1 -0.4850 0.8400 -0.0004 27 1 2.3302 -3.4263 1.1849 28 1 1.0463 -4.3153 0.3318 29 1 3.6413 -3.4288 -1.0223 30 1 3.4439 -5.0235 -0.2602 31 1 3.0265 -5.1810 -2.5977 32 1 1.5374 -5.4607 -1.6854 33 1 1.5016 -3.9563 -3.8347 34 1 2.1224 -2.7015 -2.7348 35 1 -0.3749 -2.6362 -4.1451 36 1 -4.4144 -4.2207 -3.3397 37 1 -5.0385 -2.5865 -3.7408 38 1 -5.2154 -3.1074 -6.0871 39 1 -5.6771 -4.6730 -5.3482 40 1 -2.4042 -2.9819 -6.4693 41 1 -1.6985 -4.2967 -5.4885 42 1 0.1735 -1.3362 -1.7124 43 1 -0.7187 -2.3788 -0.5882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034124716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:27 Heat of formation + Delta-G solvation = -65.530875 kcal Electronic energy + Delta-G solvation = -23538.225973 eV Core-core repulsion = 20197.717131 eV Total energy + Delta-G solvation = -3340.508842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27876 -38.68030 -37.45680 -34.41869 -33.54945 -32.35388 -30.79646 -30.29178 -28.93031 -26.05150 -24.35485 -23.75981 -22.95452 -21.95045 -20.23833 -19.57923 -19.21835 -17.30301 -16.64873 -16.57018 -15.99678 -15.47324 -15.26304 -14.94411 -14.33159 -14.03585 -13.84031 -13.50264 -13.26187 -13.00786 -12.80828 -12.43761 -12.10501 -12.05015 -11.54610 -11.45257 -11.32623 -11.13278 -11.02360 -10.96658 -10.71374 -10.43581 -10.24263 -10.16755 -9.96929 -9.96017 -9.79842 -9.51837 -9.35174 -8.55079 -8.38542 -6.65168 -5.77170 -3.22055 2.93051 3.34200 3.42749 3.44817 3.46806 3.79388 4.31839 4.49201 4.74835 4.82599 4.99719 5.10124 5.21103 5.32034 5.34338 5.46089 5.52152 5.52827 5.59188 5.63186 5.71216 5.81021 5.93034 6.02738 6.11522 6.21633 6.33654 6.48124 6.61663 6.65075 6.66034 6.67313 6.79054 6.91320 6.97467 7.10727 7.38194 7.74896 7.82899 7.90901 8.46512 8.58556 9.23680 9.90942 10.36315 11.29111 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018210 B = 0.005087 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.251522 B = 5502.400570 C = 6422.474900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.154 3.846 11 C -0.147 4.147 12 C -0.099 4.099 13 C -0.115 4.115 14 C 0.119 3.881 15 H 0.073 0.927 16 N -0.717 5.717 17 C 0.521 3.479 18 O -0.534 6.534 19 C -0.148 4.148 20 H 0.110 0.890 21 C -0.139 4.139 22 C 0.046 3.954 23 O -0.377 6.377 24 C 0.058 3.942 25 C 0.175 3.825 26 H 0.252 0.748 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.394 0.606 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 -6.454 -11.767 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.026 3.974 11 C -0.188 4.188 12 C -0.137 4.137 13 C -0.153 4.153 14 C 0.014 3.986 15 H 0.091 0.909 16 N -0.367 5.367 17 C 0.306 3.694 18 O -0.410 6.410 19 C -0.170 4.170 20 H 0.128 0.872 21 C -0.177 4.177 22 C -0.030 4.030 23 O -0.296 6.296 24 C -0.019 4.019 25 C 0.049 3.951 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.228 0.772 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.263 -6.910 -11.132 13.778 hybrid contribution 0.630 1.518 -0.289 1.669 sum -3.633 -5.392 -11.421 13.142 Atomic orbital electron populations 1.70112 1.05173 1.25205 1.54017 1.25056 0.95226 0.98346 1.00839 0.86280 0.79408 0.84197 0.77245 1.20252 1.21698 1.21735 1.19251 0.92448 0.84921 1.42121 0.91552 1.43548 1.32477 1.02062 1.52813 1.20738 0.94102 0.88238 0.94309 1.21500 1.00178 0.99696 0.97379 1.20223 0.98957 0.97460 0.97018 1.21282 0.95748 1.00870 0.97450 1.21786 0.87969 1.00728 0.88152 0.90904 1.46145 1.07235 1.62400 1.20916 1.20109 0.82803 0.78635 0.87863 1.90692 1.75810 1.42727 1.31774 1.22759 0.96399 1.02749 0.95078 0.87177 1.23099 0.93239 1.02985 0.98417 1.23613 0.88782 0.97835 0.92819 1.88876 1.15997 1.47466 1.77219 1.23138 0.91028 0.93646 0.94113 1.21302 0.89097 0.95112 0.89598 0.93788 0.93567 0.94948 0.92066 0.93439 0.93693 0.93250 0.93134 0.90086 0.77229 0.88430 0.89687 0.92121 0.88744 0.91440 0.89443 0.90490 0.95126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 11.01 55.49 0.61 -25.50 16 2 C 0.00 0.11 4.87 -17.43 -0.08 0.02 16 3 Si 0.90 21.40 29.58 -169.99 -5.03 16.37 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.26 -6.91 9.44 -15.06 -0.14 -7.05 16 8 H 0.07 1.76 7.88 -52.48 -0.41 1.34 16 9 N -0.59 -14.43 2.27 -172.09 -0.39 -14.82 16 10 C 0.15 3.24 5.65 -4.09 -0.02 3.22 16 11 C -0.15 -2.57 5.74 -28.58 -0.16 -2.73 16 12 C -0.10 -1.58 5.16 -29.79 -0.15 -1.73 16 13 C -0.12 -1.92 5.07 -28.01 -0.14 -2.06 16 14 C 0.12 2.24 2.28 -68.50 -0.16 2.09 16 15 H 0.07 1.50 6.73 -51.93 -0.35 1.15 16 16 N -0.72 -11.42 4.80 -54.36 -0.26 -11.69 16 17 C 0.52 8.72 6.94 -10.99 -0.08 8.64 16 18 O -0.53 -11.24 15.12 5.56 0.08 -11.16 16 19 C -0.15 -1.83 3.44 -90.25 -0.31 -2.14 16 20 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 21 C -0.14 -1.65 6.50 -24.73 -0.16 -1.82 16 22 C 0.05 0.46 7.72 38.21 0.29 0.76 16 23 O -0.38 -4.73 11.52 -35.23 -0.41 -5.14 16 24 C 0.06 0.63 7.30 37.73 0.28 0.91 16 25 C 0.18 4.19 4.26 -2.94 -0.01 4.18 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.05 0.98 7.99 -51.93 -0.41 0.57 16 28 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.79 7.35 -51.93 -0.38 0.41 16 33 H 0.05 0.71 7.94 -51.93 -0.41 0.29 16 34 H 0.08 1.52 7.48 -51.93 -0.39 1.14 16 35 H 0.39 5.04 8.53 -40.82 -0.35 4.69 16 36 H 0.10 1.39 6.93 -51.93 -0.36 1.03 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.97 7.59 -51.93 -0.39 0.57 16 42 H 0.08 2.02 6.31 -51.93 -0.33 1.69 16 43 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 LS Contribution 334.25 15.07 5.04 5.04 Total: -1.00 -32.02 334.25 -8.35 -40.37 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.14 Total: 4.22 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.86 Total: 2.30 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.04 Total: -52.00 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.32 Total: -16.29 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.02 -8.35 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034124716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.159 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds