Wall clock time and date at job start Tue Mar 31 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48498 * 109.46914 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47113 * 300.00149 * 3 2 1 6 6 H 1.48498 * 109.47222 * 59.99982 * 3 2 1 7 7 C 1.38811 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 195.67720 * 7 2 1 9 9 N 1.36930 * 120.00248 * 15.67983 * 7 2 1 10 10 C 1.44577 * 118.64791 * 206.51596 * 9 7 2 11 11 C 1.54860 * 109.60699 * 270.70681 * 10 9 7 12 12 C 1.47095 * 110.32188 * 288.73428 * 11 10 9 13 13 C 1.52566 * 114.32730 * 62.79560 * 12 11 10 14 14 C 1.50888 * 109.35723 * 274.98979 * 13 12 11 15 15 H 1.08997 * 109.26384 * 331.76182 * 14 13 12 16 16 N 1.46496 * 109.36656 * 212.07937 * 14 13 12 17 17 C 1.34778 * 120.00309 * 154.36190 * 16 14 13 18 18 O 1.21279 * 119.99341 * 0.02562 * 17 16 14 19 19 C 1.50693 * 120.00140 * 180.02562 * 17 16 14 20 20 H 1.08998 * 110.43862 * 298.90404 * 19 17 16 21 21 C 1.54814 * 110.48874 * 176.22142 * 19 17 16 22 22 C 1.54986 * 102.09629 * 220.44178 * 21 19 17 23 23 O 1.44385 * 103.49256 * 37.02216 * 22 21 19 24 24 C 1.43753 * 106.97106 * 319.94268 * 23 22 21 25 25 C 1.47606 * 118.64438 * 26.49456 * 9 7 2 26 26 H 0.97000 * 120.00067 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.44630 * 30.74285 * 10 9 7 28 28 H 1.08999 * 109.45560 * 150.66128 * 10 9 7 29 29 H 1.09004 * 109.32967 * 48.98917 * 11 10 9 30 30 H 1.09001 * 109.33344 * 168.64273 * 11 10 9 31 31 H 1.08995 * 108.51571 * 184.05213 * 12 11 10 32 32 H 1.09001 * 108.50982 * 301.69976 * 12 11 10 33 33 H 1.08998 * 109.49139 * 155.02895 * 13 12 11 34 34 H 1.08998 * 109.49118 * 34.95524 * 13 12 11 35 35 H 0.97004 * 120.00318 * 334.64189 * 16 14 13 36 36 H 1.09001 * 110.90379 * 338.64338 * 21 19 17 37 37 H 1.09003 * 110.90958 * 102.23953 * 21 19 17 38 38 H 1.09000 * 110.61939 * 278.52563 * 22 21 19 39 39 H 1.08999 * 110.75986 * 155.58474 * 22 21 19 40 40 H 1.09000 * 109.87480 * 267.08944 * 24 23 22 41 41 H 1.08997 * 109.88062 * 145.93733 * 24 23 22 42 42 H 1.08995 * 108.94789 * 17.20926 * 25 9 7 43 43 H 1.08996 * 108.87955 * 258.52648 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0602 -1.2197 0.2522 9 7 1.3638 -2.3658 -0.3215 10 6 1.8689 -3.6099 0.2145 11 6 2.9226 -4.2029 -0.7532 12 6 2.2708 -4.7068 -1.9717 13 6 1.5629 -3.6349 -2.7949 14 6 0.1716 -3.4238 -2.2505 15 1 -0.1776 -4.3471 -1.7882 16 7 -0.7289 -3.0587 -3.3469 17 6 -2.0485 -3.3150 -3.2489 18 8 -2.4904 -3.8475 -2.2529 19 6 -2.9746 -2.9399 -4.3770 20 1 -2.9539 -1.8631 -4.5444 21 6 -4.4164 -3.4165 -4.0756 22 6 -4.8832 -3.9346 -5.4597 23 8 -3.6954 -4.5443 -6.0093 24 6 -2.5891 -3.6936 -5.6646 25 6 0.1797 -2.2983 -1.2002 26 1 -0.4850 0.8400 -0.0004 27 1 2.3302 -3.4263 1.1849 28 1 1.0463 -4.3153 0.3318 29 1 3.6413 -3.4288 -1.0223 30 1 3.4439 -5.0235 -0.2602 31 1 3.0265 -5.1810 -2.5977 32 1 1.5374 -5.4607 -1.6854 33 1 1.5016 -3.9563 -3.8347 34 1 2.1224 -2.7015 -2.7348 35 1 -0.3749 -2.6362 -4.1451 36 1 -4.4144 -4.2207 -3.3397 37 1 -5.0385 -2.5865 -3.7408 38 1 -5.2154 -3.1074 -6.0871 39 1 -5.6771 -4.6730 -5.3482 40 1 -2.4042 -2.9819 -6.4693 41 1 -1.6985 -4.2967 -5.4885 42 1 0.1735 -1.3362 -1.7124 43 1 -0.7187 -2.3788 -0.5882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034124716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:26 Heat of formation + Delta-G solvation = -87.715394 kcal Electronic energy + Delta-G solvation = -23539.187966 eV Core-core repulsion = 20197.717131 eV Total energy + Delta-G solvation = -3341.470835 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49268 -39.94464 -38.91159 -36.07317 -35.21574 -33.42595 -32.69165 -31.65305 -29.96807 -27.93700 -25.98168 -25.23757 -24.15389 -23.09075 -21.66862 -21.07990 -20.72820 -18.63742 -18.40019 -17.54333 -17.35921 -17.02436 -16.63790 -15.97898 -15.93478 -15.58871 -15.31224 -15.12161 -14.77470 -14.36733 -14.10319 -13.84265 -13.77431 -13.14034 -12.99094 -12.95055 -12.80732 -12.46623 -12.41917 -12.37010 -12.18999 -12.04171 -11.90742 -11.84998 -11.54920 -11.41452 -11.17701 -11.01820 -10.54447 -10.51482 -10.02120 -8.67582 -7.85455 -5.34268 1.44490 1.46864 1.57699 1.60561 2.16574 2.51850 2.95092 3.26829 3.34364 3.61399 3.79968 3.92722 3.94655 4.06634 4.13400 4.27928 4.29849 4.35502 4.42691 4.44802 4.63786 4.68855 4.75312 4.82542 4.84458 4.91723 4.94022 5.07206 5.12841 5.15666 5.28116 5.30485 5.39616 5.45683 5.54991 5.62929 5.67978 5.79943 5.83860 6.38628 6.59178 7.15208 7.28648 7.91799 8.32709 9.19027 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018210 B = 0.005087 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.251522 B = 5502.400570 C = 6422.474900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.297 1.297 7 C -0.262 4.262 8 H 0.071 0.929 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.132 4.132 12 C -0.101 4.101 13 C -0.107 4.107 14 C 0.135 3.865 15 H 0.055 0.945 16 N -0.708 5.708 17 C 0.513 3.487 18 O -0.585 6.585 19 C -0.142 4.142 20 H 0.134 0.866 21 C -0.144 4.144 22 C 0.051 3.949 23 O -0.399 6.399 24 C 0.062 3.938 25 C 0.196 3.804 26 H 0.247 0.753 27 H 0.037 0.963 28 H 0.027 0.973 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.413 0.587 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.051 0.949 43 H -0.028 1.028 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.538 -6.685 -14.344 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.224 1.224 7 C -0.392 4.392 8 H 0.088 0.912 9 N -0.324 5.324 10 C 0.019 3.981 11 C -0.171 4.171 12 C -0.139 4.139 13 C -0.145 4.145 14 C 0.029 3.971 15 H 0.073 0.927 16 N -0.359 5.359 17 C 0.301 3.699 18 O -0.465 6.465 19 C -0.163 4.163 20 H 0.152 0.848 21 C -0.182 4.182 22 C -0.025 4.025 23 O -0.318 6.318 24 C -0.015 4.015 25 C 0.069 3.931 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.250 0.750 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.069 0.931 43 H -0.010 1.010 Dipole moment (debyes) X Y Z Total from point charges -2.926 -7.160 -13.747 15.774 hybrid contribution 0.190 1.540 0.620 1.671 sum -2.736 -5.619 -13.127 14.539 Atomic orbital electron populations 1.70308 1.06809 1.25485 1.55879 1.25823 0.95897 1.01566 1.01224 0.85227 0.78763 0.79910 0.76675 1.18783 1.21489 1.22419 1.19580 0.92704 0.85857 1.41049 0.91178 1.43766 1.32277 1.02769 1.53568 1.20948 0.94973 0.87054 0.95131 1.21314 0.98592 1.00053 0.97190 1.20247 0.99737 0.97153 0.96742 1.21220 0.93223 1.00426 0.99591 1.21330 0.90359 0.97502 0.87941 0.92706 1.46023 1.06993 1.62175 1.20700 1.21003 0.83227 0.77358 0.88345 1.90672 1.76686 1.44979 1.34172 1.22821 0.95261 1.04280 0.93980 0.84842 1.23112 0.93496 1.02479 0.99131 1.23737 0.88265 0.98923 0.91573 1.88851 1.17021 1.48586 1.77374 1.23233 0.90493 0.93894 0.93913 1.20925 0.86688 0.95828 0.89656 0.94408 0.94440 0.95457 0.92992 0.90557 0.90215 0.93192 0.89423 0.92032 0.74998 0.91569 0.88525 0.89407 0.87672 0.88083 0.89784 0.93098 1.01016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.67 11.01 21.65 0.24 -56.43 16 2 C -0.05 -2.80 4.87 84.86 0.41 -2.39 16 3 Si 0.97 44.59 29.58 68.60 2.03 46.62 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.26 -14.27 9.44 84.03 0.79 -13.48 16 8 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 9 N -0.60 -30.40 2.27 -698.37 -1.59 -31.99 16 10 C 0.15 6.20 5.65 87.37 0.49 6.69 16 11 C -0.13 -4.34 5.74 29.39 0.17 -4.17 16 12 C -0.10 -2.95 5.16 28.61 0.15 -2.80 16 13 C -0.11 -3.34 5.07 29.76 0.15 -3.18 16 14 C 0.13 5.16 2.28 44.63 0.10 5.26 16 15 H 0.05 2.32 6.73 -2.39 -0.02 2.31 16 16 N -0.71 -22.35 4.80 -444.29 -2.13 -24.49 16 17 C 0.51 17.42 6.94 87.65 0.61 18.03 16 18 O -0.59 -25.98 15.12 -3.03 -0.05 -26.03 16 19 C -0.14 -3.32 3.44 -10.55 -0.04 -3.36 16 20 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 21 C -0.14 -3.33 6.50 31.89 0.21 -3.13 16 22 C 0.05 0.91 7.72 72.66 0.56 1.47 16 23 O -0.40 -9.13 11.52 -148.98 -1.72 -10.84 16 24 C 0.06 1.18 7.30 72.35 0.53 1.71 16 25 C 0.20 9.83 4.26 86.49 0.37 10.19 16 26 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.04 1.62 7.99 -2.38 -0.02 1.60 16 28 H 0.03 1.17 8.06 -2.39 -0.02 1.15 16 29 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.48 7.35 -2.39 -0.02 1.46 16 33 H 0.09 2.12 7.94 -2.39 -0.02 2.10 16 34 H 0.06 2.22 7.48 -2.39 -0.02 2.20 16 35 H 0.41 9.83 8.53 -92.71 -0.79 9.04 16 36 H 0.07 1.96 6.93 -2.39 -0.02 1.95 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.66 7.59 -2.39 -0.02 1.64 16 42 H 0.05 2.79 6.31 -2.39 -0.02 2.77 16 43 H -0.03 -1.72 8.03 -2.39 -0.02 -1.74 16 Total: -1.00 -74.14 334.25 1.49 -72.64 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.20 Total: 19.67 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 4.51 Total: 10.85 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -3.48 Total: -112.90 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -1.76 Total: -36.87 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -74.14 1.49 -72.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034124716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.072 kcal (2) G-P(sol) polarization free energy of solvation -74.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds