Wall clock time and date at job start Tue Mar 31 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99756 * 2 1 4 4 H 1.48506 * 109.46886 * 269.99195 * 3 2 1 5 5 H 1.48496 * 109.47359 * 29.99098 * 3 2 1 6 6 H 1.48499 * 109.47223 * 149.99889 * 3 2 1 7 7 C 1.38813 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99653 * 160.36845 * 7 2 1 9 9 N 1.36930 * 119.99982 * 340.36766 * 7 2 1 10 10 C 1.50165 * 120.54010 * 336.83750 * 9 7 2 11 11 C 1.46240 * 107.53084 * 109.31274 * 10 9 7 12 12 C 1.52530 * 114.27931 * 58.41126 * 11 10 9 13 13 C 1.50123 * 105.41198 * 270.59293 * 12 11 10 14 14 C 1.54845 * 110.81607 * 97.68334 * 13 12 11 15 15 H 1.09001 * 109.35954 * 81.33921 * 14 13 12 16 16 N 1.46504 * 109.35803 * 201.06185 * 14 13 12 17 17 C 1.34779 * 119.99854 * 204.99986 * 16 14 13 18 18 O 1.21280 * 120.00161 * 359.97438 * 17 16 14 19 19 C 1.50699 * 119.99747 * 180.02562 * 17 16 14 20 20 H 1.08992 * 110.75386 * 62.01494 * 19 17 16 21 21 C 1.55303 * 110.84580 * 185.71599 * 19 17 16 22 22 C 1.54948 * 100.94313 * 152.32239 * 21 19 17 23 23 O 1.43649 * 105.13488 * 323.55088 * 22 21 19 24 24 C 1.43237 * 109.96809 * 24.42876 * 23 22 21 25 25 C 1.43439 * 120.53157 * 156.55873 * 9 7 2 26 26 H 0.96996 * 120.00343 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.84880 * 228.81742 * 10 9 7 28 28 H 1.08997 * 109.84629 * 349.80757 * 10 9 7 29 29 H 1.09006 * 108.52241 * 179.65171 * 11 10 9 30 30 H 1.08999 * 108.52442 * 297.32351 * 11 10 9 31 31 H 1.09007 * 110.24862 * 29.56386 * 12 11 10 32 32 H 1.08998 * 110.25097 * 151.47762 * 12 11 10 33 33 H 1.08999 * 109.20970 * 218.02269 * 13 12 11 34 34 H 1.08997 * 109.21222 * 337.34052 * 13 12 11 35 35 H 0.97000 * 120.00205 * 24.99704 * 16 14 13 36 36 H 1.09006 * 111.12175 * 270.23657 * 21 19 17 37 37 H 1.09001 * 111.12823 * 34.39797 * 21 19 17 38 38 H 1.09007 * 110.30635 * 204.63897 * 22 21 19 39 39 H 1.08998 * 110.39638 * 82.51208 * 22 21 19 40 40 H 1.09005 * 109.82895 * 238.77269 * 24 23 22 41 41 H 1.09005 * 109.90528 * 117.84687 * 24 23 22 42 42 H 1.08994 * 108.15982 * 33.56205 * 25 9 7 43 43 H 1.09007 * 108.15438 * 150.12782 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4475 2.6527 0.6998 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0432 -1.2294 -0.3137 9 7 1.3853 -2.3534 0.3995 10 6 0.1852 -2.2973 1.3004 11 6 -0.9811 -2.6786 0.5048 12 6 -0.8853 -4.0649 -0.1241 13 6 -0.2323 -3.8532 -1.4592 14 6 1.2856 -4.1492 -1.3825 15 1 1.4482 -5.2246 -1.4551 16 7 1.9678 -3.4789 -2.4923 17 6 3.1439 -3.9554 -2.9467 18 8 3.6376 -4.9387 -2.4366 19 6 3.8458 -3.2656 -4.0879 20 1 4.1111 -2.2437 -3.8170 21 6 5.0995 -4.0678 -4.5315 22 6 5.1997 -3.6564 -6.0220 23 8 3.8403 -3.5488 -6.4736 24 6 2.9750 -3.2877 -5.3624 25 6 1.8629 -3.6321 -0.0413 26 1 -0.4850 0.8400 -0.0004 27 1 0.3117 -2.9940 2.1291 28 1 0.0570 -1.2849 1.6833 29 1 -1.8622 -2.6493 1.1459 30 1 -1.1102 -1.9471 -0.2930 31 1 -0.2724 -4.7190 0.4962 32 1 -1.8804 -4.4909 -0.2517 33 1 -0.6906 -4.5174 -2.1919 34 1 -0.3807 -2.8194 -1.7711 35 1 1.5731 -2.6923 -2.9000 36 1 5.9836 -3.7532 -3.9769 37 1 4.9356 -5.1406 -4.4301 38 1 5.7280 -4.4216 -6.5909 39 1 5.7074 -2.6967 -6.1179 40 1 2.2253 -4.0752 -5.2845 41 1 2.4851 -2.3226 -5.4924 42 1 2.9471 -3.5751 -0.1374 43 1 1.6339 -4.3652 0.7323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034124718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:30 Heat of formation + Delta-G solvation = -60.508207 kcal Electronic energy + Delta-G solvation = -23883.814888 eV Core-core repulsion = 20543.523846 eV Total energy + Delta-G solvation = -3340.291042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14244 -38.63342 -37.47758 -34.23580 -33.14665 -32.28970 -31.02264 -30.16145 -28.98270 -26.14578 -24.39449 -23.27634 -22.79315 -22.04668 -20.16593 -19.38925 -19.14509 -17.29019 -16.66314 -16.60817 -15.76524 -15.23579 -15.03075 -14.77397 -14.61833 -13.89663 -13.81707 -13.45340 -13.32598 -13.12217 -12.39343 -12.33763 -12.02811 -11.82500 -11.58966 -11.49300 -11.36012 -11.25474 -10.97330 -10.79717 -10.76658 -10.53973 -10.13903 -9.99667 -9.75024 -9.68234 -9.46893 -9.29467 -9.27133 -8.64706 -8.34337 -6.72974 -5.84623 -3.22784 2.99478 3.31015 3.40466 3.43550 3.58078 3.86660 4.34363 4.45241 4.88155 4.90799 5.09525 5.17717 5.26446 5.35008 5.38677 5.47747 5.60931 5.64044 5.67377 5.74928 5.87807 5.93617 6.10611 6.13431 6.20324 6.24557 6.43235 6.50535 6.60368 6.83655 6.85625 6.89147 6.95903 7.01019 7.20413 7.24795 7.58665 7.69593 7.95862 8.04565 8.37784 8.67752 9.14546 9.82091 10.35703 11.21884 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.006162 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.568684 B = 4543.126802 C = 5608.450998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.002 3.998 3 Si 0.895 3.105 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.063 0.937 9 N -0.583 5.583 10 C 0.165 3.835 11 C -0.131 4.131 12 C -0.112 4.112 13 C -0.110 4.110 14 C 0.116 3.884 15 H 0.071 0.929 16 N -0.698 5.698 17 C 0.522 3.478 18 O -0.553 6.553 19 C -0.148 4.148 20 H 0.112 0.888 21 C -0.134 4.134 22 C 0.050 3.950 23 O -0.384 6.384 24 C 0.064 3.936 25 C 0.151 3.849 26 H 0.252 0.748 27 H 0.005 0.995 28 H 0.089 0.911 29 H 0.024 0.976 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.401 0.599 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.037 0.963 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -5.874 -7.138 9.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.725 3.275 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.081 0.919 9 N -0.304 5.304 10 C 0.041 3.959 11 C -0.169 4.169 12 C -0.150 4.150 13 C -0.148 4.148 14 C 0.009 3.991 15 H 0.089 0.911 16 N -0.346 5.346 17 C 0.307 3.693 18 O -0.432 6.432 19 C -0.170 4.170 20 H 0.130 0.870 21 C -0.171 4.171 22 C -0.027 4.027 23 O -0.303 6.303 24 C -0.013 4.013 25 C 0.021 3.979 26 H 0.062 0.938 27 H 0.023 0.977 28 H 0.107 0.893 29 H 0.043 0.957 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.235 0.765 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.940 -6.423 -6.930 9.896 hybrid contribution 0.224 1.460 -0.020 1.477 sum 3.164 -4.964 -6.950 9.108 Atomic orbital electron populations 1.69958 1.04972 1.25160 1.54355 1.24859 0.95194 0.97983 1.01554 0.86414 0.79323 0.84146 0.77569 1.21675 1.21668 1.20771 1.19115 0.93372 0.85282 1.39246 0.91938 1.44247 1.33529 1.00767 1.51834 1.20171 0.85347 1.00381 0.89965 1.21014 0.98044 0.95579 1.02270 1.20973 0.98582 0.98905 0.96577 1.21663 0.93403 1.02321 0.97382 1.22819 0.91880 0.95680 0.88752 0.91118 1.46029 1.21703 1.31505 1.35409 1.19958 0.81364 0.84244 0.83695 1.90651 1.65548 1.27040 1.59918 1.22926 0.96888 1.02142 0.95001 0.86971 1.23123 0.97100 1.01926 0.94997 1.23432 0.84072 1.00848 0.94303 1.88386 1.17177 1.93254 1.31518 1.23067 0.92756 1.01710 0.83781 1.20789 0.96869 0.88460 0.91794 0.93777 0.97692 0.89321 0.95692 0.88096 0.92472 0.93255 0.94295 0.90170 0.76451 0.89484 0.89081 0.89615 0.92026 0.90916 0.90461 0.94510 0.94575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.25 9.40 55.49 0.52 -22.73 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 20.59 29.60 -169.99 -5.03 15.56 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.24 -6.07 9.63 -15.06 -0.14 -6.21 16 8 H 0.06 1.62 7.89 -52.48 -0.41 1.21 16 9 N -0.58 -13.48 2.60 -175.08 -0.46 -13.93 16 10 C 0.16 3.67 5.25 -5.20 -0.03 3.65 16 11 C -0.13 -2.64 5.02 -30.18 -0.15 -2.79 16 12 C -0.11 -1.95 5.76 -28.40 -0.16 -2.12 16 13 C -0.11 -1.91 5.23 -27.19 -0.14 -2.06 16 14 C 0.12 2.13 2.92 -65.95 -0.19 1.93 16 15 H 0.07 1.31 7.58 -51.93 -0.39 0.92 16 16 N -0.70 -11.96 5.03 -51.89 -0.26 -12.22 16 17 C 0.52 8.88 6.85 -10.98 -0.08 8.80 16 18 O -0.55 -11.07 15.43 5.56 0.09 -10.98 16 19 C -0.15 -2.01 3.39 -89.83 -0.30 -2.32 16 20 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 21 C -0.13 -1.64 6.23 -24.48 -0.15 -1.79 16 22 C 0.05 0.54 7.78 38.19 0.30 0.84 16 23 O -0.38 -5.17 11.36 -35.23 -0.40 -5.57 16 24 C 0.06 0.81 7.34 37.88 0.28 1.09 16 25 C 0.15 3.15 4.78 -4.66 -0.02 3.13 16 26 H 0.25 6.47 8.31 -40.82 -0.34 6.13 16 27 H 0.00 0.10 8.12 -51.93 -0.42 -0.32 16 28 H 0.09 2.22 6.06 -51.93 -0.31 1.90 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 2.33 5.26 -51.93 -0.27 2.05 16 31 H 0.06 0.99 6.29 -51.93 -0.33 0.66 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.59 6.58 -51.93 -0.34 1.25 16 35 H 0.40 6.63 8.43 -40.82 -0.34 6.29 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.24 7.47 -51.93 -0.39 0.85 16 38 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.94 7.81 -51.93 -0.41 0.53 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.83 7.83 -51.93 -0.41 0.43 16 43 H 0.04 0.72 6.89 -51.92 -0.36 0.36 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -27.81 329.47 -8.37 -36.18 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.90 Total: 6.61 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -0.89 Total: 2.12 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.19 Total: -48.88 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.31 Total: -16.55 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.81 -8.37 -36.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034124718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.328 kcal (2) G-P(sol) polarization free energy of solvation -27.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds