Wall clock time and date at job start Tue Mar 31 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99756 * 2 1 4 4 H 1.48506 * 109.46886 * 269.99195 * 3 2 1 5 5 H 1.48496 * 109.47359 * 29.99098 * 3 2 1 6 6 H 1.48499 * 109.47223 * 149.99889 * 3 2 1 7 7 C 1.38813 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99653 * 160.36845 * 7 2 1 9 9 N 1.36930 * 119.99982 * 340.36766 * 7 2 1 10 10 C 1.50165 * 120.54010 * 336.83750 * 9 7 2 11 11 C 1.46240 * 107.53084 * 109.31274 * 10 9 7 12 12 C 1.52530 * 114.27931 * 58.41126 * 11 10 9 13 13 C 1.50123 * 105.41198 * 270.59293 * 12 11 10 14 14 C 1.54845 * 110.81607 * 97.68334 * 13 12 11 15 15 H 1.09001 * 109.35954 * 81.33921 * 14 13 12 16 16 N 1.46504 * 109.35803 * 201.06185 * 14 13 12 17 17 C 1.34779 * 119.99854 * 204.99986 * 16 14 13 18 18 O 1.21280 * 120.00161 * 359.97438 * 17 16 14 19 19 C 1.50699 * 119.99747 * 180.02562 * 17 16 14 20 20 H 1.08992 * 110.75386 * 62.01494 * 19 17 16 21 21 C 1.55303 * 110.84580 * 185.71599 * 19 17 16 22 22 C 1.54948 * 100.94313 * 152.32239 * 21 19 17 23 23 O 1.43649 * 105.13488 * 323.55088 * 22 21 19 24 24 C 1.43237 * 109.96809 * 24.42876 * 23 22 21 25 25 C 1.43439 * 120.53157 * 156.55873 * 9 7 2 26 26 H 0.96996 * 120.00343 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.84880 * 228.81742 * 10 9 7 28 28 H 1.08997 * 109.84629 * 349.80757 * 10 9 7 29 29 H 1.09006 * 108.52241 * 179.65171 * 11 10 9 30 30 H 1.08999 * 108.52442 * 297.32351 * 11 10 9 31 31 H 1.09007 * 110.24862 * 29.56386 * 12 11 10 32 32 H 1.08998 * 110.25097 * 151.47762 * 12 11 10 33 33 H 1.08999 * 109.20970 * 218.02269 * 13 12 11 34 34 H 1.08997 * 109.21222 * 337.34052 * 13 12 11 35 35 H 0.97000 * 120.00205 * 24.99704 * 16 14 13 36 36 H 1.09006 * 111.12175 * 270.23657 * 21 19 17 37 37 H 1.09001 * 111.12823 * 34.39797 * 21 19 17 38 38 H 1.09007 * 110.30635 * 204.63897 * 22 21 19 39 39 H 1.08998 * 110.39638 * 82.51208 * 22 21 19 40 40 H 1.09005 * 109.82895 * 238.77269 * 24 23 22 41 41 H 1.09005 * 109.90528 * 117.84687 * 24 23 22 42 42 H 1.08994 * 108.15982 * 33.56205 * 25 9 7 43 43 H 1.09007 * 108.15438 * 150.12782 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4475 2.6527 0.6998 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0432 -1.2294 -0.3137 9 7 1.3853 -2.3534 0.3995 10 6 0.1852 -2.2973 1.3004 11 6 -0.9811 -2.6786 0.5048 12 6 -0.8853 -4.0649 -0.1241 13 6 -0.2323 -3.8532 -1.4592 14 6 1.2856 -4.1492 -1.3825 15 1 1.4482 -5.2246 -1.4551 16 7 1.9678 -3.4789 -2.4923 17 6 3.1439 -3.9554 -2.9467 18 8 3.6376 -4.9387 -2.4366 19 6 3.8458 -3.2656 -4.0879 20 1 4.1111 -2.2437 -3.8170 21 6 5.0995 -4.0678 -4.5315 22 6 5.1997 -3.6564 -6.0220 23 8 3.8403 -3.5488 -6.4736 24 6 2.9750 -3.2877 -5.3624 25 6 1.8629 -3.6321 -0.0413 26 1 -0.4850 0.8400 -0.0004 27 1 0.3117 -2.9940 2.1291 28 1 0.0570 -1.2849 1.6833 29 1 -1.8622 -2.6493 1.1459 30 1 -1.1102 -1.9471 -0.2930 31 1 -0.2724 -4.7190 0.4962 32 1 -1.8804 -4.4909 -0.2517 33 1 -0.6906 -4.5174 -2.1919 34 1 -0.3807 -2.8194 -1.7711 35 1 1.5731 -2.6923 -2.9000 36 1 5.9836 -3.7532 -3.9769 37 1 4.9356 -5.1406 -4.4301 38 1 5.7280 -4.4216 -6.5909 39 1 5.7074 -2.6967 -6.1179 40 1 2.2253 -4.0752 -5.2845 41 1 2.4851 -2.3226 -5.4924 42 1 2.9471 -3.5751 -0.1374 43 1 1.6339 -4.3652 0.7323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034124718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:29 Heat of formation + Delta-G solvation = -77.690567 kcal Electronic energy + Delta-G solvation = -23884.559971 eV Core-core repulsion = 20543.523846 eV Total energy + Delta-G solvation = -3341.036125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38707 -39.94923 -38.94775 -35.84285 -34.77547 -33.43535 -32.82451 -31.57223 -30.10879 -27.92294 -25.89585 -24.87087 -24.07910 -23.12394 -21.69956 -20.83353 -20.66374 -18.58836 -18.41958 -17.65678 -17.19312 -16.78086 -16.50246 -16.11460 -15.87194 -15.59486 -15.31327 -14.91452 -14.63578 -14.27757 -14.03107 -13.83992 -13.42312 -13.23831 -13.21632 -13.13445 -12.61887 -12.48415 -12.42855 -12.34761 -12.25557 -11.93973 -11.88619 -11.77494 -11.29932 -11.13296 -10.92032 -10.85128 -10.50531 -10.43034 -9.94866 -8.58291 -7.78882 -5.18356 1.45886 1.52152 1.58170 1.64727 2.30418 2.55286 2.87343 3.29997 3.34118 3.62253 3.77107 3.90089 3.97230 4.12236 4.18158 4.23665 4.29975 4.43562 4.54944 4.62487 4.67253 4.69820 4.76942 4.83936 4.85928 4.91891 4.92767 5.06980 5.13614 5.22864 5.32506 5.36025 5.47512 5.61226 5.70121 5.75169 5.81676 5.91695 6.24163 6.44215 6.67184 7.21746 7.30420 7.93667 8.44797 9.24495 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.006162 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.568684 B = 4543.126802 C = 5608.450998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.033 4.033 3 Si 0.947 3.053 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.050 0.950 9 N -0.592 5.592 10 C 0.167 3.833 11 C -0.122 4.122 12 C -0.105 4.105 13 C -0.099 4.099 14 C 0.124 3.876 15 H 0.073 0.927 16 N -0.697 5.697 17 C 0.521 3.479 18 O -0.585 6.585 19 C -0.145 4.145 20 H 0.121 0.879 21 C -0.132 4.132 22 C 0.051 3.949 23 O -0.400 6.400 24 C 0.069 3.931 25 C 0.155 3.845 26 H 0.247 0.753 27 H 0.017 0.983 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.405 0.595 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.012 0.988 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 -6.264 -8.129 10.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.229 4.229 3 Si 0.777 3.223 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.068 0.932 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.161 4.161 12 C -0.143 4.143 13 C -0.137 4.137 14 C 0.016 3.984 15 H 0.091 0.909 16 N -0.345 5.345 17 C 0.307 3.693 18 O -0.466 6.466 19 C -0.167 4.167 20 H 0.139 0.861 21 C -0.170 4.170 22 C -0.024 4.024 23 O -0.320 6.320 24 C -0.008 4.008 25 C 0.025 3.975 26 H 0.057 0.943 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.030 0.970 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.947 -6.818 -7.937 10.870 hybrid contribution 0.262 1.547 0.342 1.605 sum 3.209 -5.272 -7.595 9.786 Atomic orbital electron populations 1.70090 1.05541 1.25057 1.54840 1.25327 0.95831 0.99856 1.01920 0.85614 0.77963 0.81380 0.77371 1.21209 1.22312 1.21203 1.19115 0.92947 0.86345 1.39174 0.93176 1.44293 1.33838 1.00932 1.52322 1.20105 0.86030 0.98964 0.90515 1.20835 0.97333 0.96683 1.01252 1.20942 1.00197 0.97098 0.96041 1.21547 0.92656 1.01366 0.98177 1.22598 0.92555 0.95618 0.87640 0.90874 1.46030 1.21902 1.31543 1.35050 1.20525 0.80945 0.83775 0.84022 1.90631 1.66251 1.28567 1.61169 1.22936 0.97391 1.02261 0.94074 0.86107 1.23120 0.96790 1.00760 0.96322 1.23585 0.83241 1.02404 0.93197 1.88367 1.18326 1.93424 1.31870 1.23041 0.92442 1.02291 0.83041 1.20766 0.95407 0.87773 0.93546 0.94348 0.96502 0.92376 0.94736 0.90833 0.92094 0.90579 0.91796 0.92559 0.76036 0.88564 0.90652 0.87810 0.90290 0.91372 0.89120 0.96973 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.37 9.40 21.65 0.20 -47.16 16 2 C -0.03 -1.67 4.91 84.86 0.42 -1.26 16 3 Si 0.95 42.45 29.60 68.60 2.03 44.48 16 4 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 6 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.25 -12.48 9.63 84.03 0.81 -11.67 16 8 H 0.05 2.64 7.89 -2.91 -0.02 2.61 16 9 N -0.59 -27.43 2.60 -707.83 -1.84 -29.27 16 10 C 0.17 7.42 5.25 83.58 0.44 7.86 16 11 C -0.12 -4.83 5.02 28.36 0.14 -4.69 16 12 C -0.10 -3.40 5.76 29.51 0.17 -3.23 16 13 C -0.10 -3.29 5.23 30.30 0.16 -3.14 16 14 C 0.12 4.41 2.92 46.27 0.13 4.54 16 15 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 16 N -0.70 -23.50 5.03 -436.48 -2.20 -25.70 16 17 C 0.52 17.45 6.85 87.66 0.60 18.05 16 18 O -0.59 -23.38 15.43 -3.03 -0.05 -23.43 16 19 C -0.15 -3.78 3.39 -10.28 -0.03 -3.82 16 20 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 21 C -0.13 -3.07 6.23 32.05 0.20 -2.87 16 22 C 0.05 1.00 7.78 72.65 0.56 1.57 16 23 O -0.40 -9.98 11.36 -148.98 -1.69 -11.67 16 24 C 0.07 1.64 7.34 72.45 0.53 2.17 16 25 C 0.15 6.40 4.78 87.59 0.42 6.82 16 26 H 0.25 12.77 8.31 -92.71 -0.77 12.00 16 27 H 0.02 0.70 8.12 -2.38 -0.02 0.68 16 28 H 0.06 2.94 6.06 -2.39 -0.01 2.93 16 29 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.07 3.37 5.26 -2.39 -0.01 3.36 16 31 H 0.06 1.95 6.29 -2.38 -0.01 1.94 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 2.18 6.58 -2.39 -0.02 2.16 16 35 H 0.40 13.15 8.43 -92.71 -0.78 12.37 16 36 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.07 2.00 7.47 -2.39 -0.02 1.98 16 38 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.67 7.81 -2.38 -0.02 1.65 16 41 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.01 0.55 7.83 -2.39 -0.02 0.53 16 43 H 0.04 1.73 6.89 -2.38 -0.02 1.71 16 Total: -1.00 -59.09 329.47 1.23 -57.86 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.22 Total: 24.55 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 4.55 Total: 10.34 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -3.83 Total: -102.13 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.74 Total: -35.10 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -59.09 1.23 -57.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034124718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.831 kcal (2) G-P(sol) polarization free energy of solvation -59.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds