Wall clock time and date at job start Tue Mar 31 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99904 * 2 1 4 4 H 1.48492 * 109.47227 * 274.33118 * 3 2 1 5 5 H 1.48503 * 109.46884 * 34.33464 * 3 2 1 6 6 H 1.48495 * 109.47053 * 154.32982 * 3 2 1 7 7 C 1.38805 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00636 * 196.92719 * 7 2 1 9 9 N 1.36946 * 119.99792 * 17.19741 * 7 2 1 10 10 C 1.47605 * 118.64127 * 26.59058 * 9 7 2 11 11 C 1.54298 * 111.94509 * 137.77410 * 10 9 7 12 12 C 1.50880 * 110.23402 * 319.69905 * 11 10 9 13 13 C 1.52574 * 109.35609 * 91.79661 * 12 11 10 14 14 C 1.47091 * 114.32378 * 274.98446 * 13 12 11 15 15 H 1.08995 * 109.19260 * 302.63102 * 14 13 12 16 16 N 1.46505 * 109.32700 * 183.06271 * 14 13 12 17 17 C 1.34773 * 119.99966 * 154.13070 * 16 14 13 18 18 O 1.21286 * 120.00235 * 0.02562 * 17 16 14 19 19 C 1.50700 * 120.00002 * 180.02562 * 17 16 14 20 20 H 1.09000 * 110.74977 * 59.30404 * 19 17 16 21 21 C 1.55312 * 110.84814 * 182.77682 * 19 17 16 22 22 C 1.55205 * 100.82302 * 152.18104 * 21 19 17 23 23 O 1.43639 * 105.26308 * 323.81347 * 22 21 19 24 24 C 1.43236 * 109.97187 * 24.28643 * 23 22 21 25 25 C 1.44574 * 118.64275 * 206.85380 * 9 7 2 26 26 H 0.97004 * 119.99824 * 0.02562 * 1 2 3 27 27 H 1.09002 * 108.94308 * 258.57688 * 10 9 7 28 28 H 1.08998 * 108.94797 * 17.19914 * 10 9 7 29 29 H 1.08999 * 109.36552 * 199.42007 * 11 10 9 30 30 H 1.08999 * 109.11996 * 79.82317 * 11 10 9 31 31 H 1.09005 * 109.49073 * 331.83530 * 12 11 10 32 32 H 1.08999 * 109.50664 * 211.77054 * 12 11 10 33 33 H 1.08998 * 108.51230 * 153.73639 * 13 12 11 34 34 H 1.08999 * 108.38960 * 36.15481 * 13 12 11 35 35 H 0.97001 * 120.00122 * 334.13555 * 16 14 13 36 36 H 1.08999 * 111.12061 * 270.24216 * 21 19 17 37 37 H 1.08991 * 111.12560 * 34.40499 * 21 19 17 38 38 H 1.09004 * 110.36750 * 204.79635 * 22 21 19 39 39 H 1.09001 * 110.21192 * 82.75856 * 22 21 19 40 40 H 1.08997 * 109.83339 * 238.77146 * 24 23 22 41 41 H 1.09006 * 109.90486 * 117.84196 * 24 23 22 42 42 H 1.08996 * 109.45344 * 30.75073 * 25 9 7 43 43 H 1.08999 * 109.44726 * 150.67227 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4061 2.0993 -1.3960 5 1 1.4964 2.6245 0.7897 6 1 3.5905 1.4155 0.6065 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2225 0.2717 9 7 1.3715 -2.3614 -0.3517 10 6 0.2091 -2.2821 -1.2580 11 6 0.2323 -3.3970 -2.3244 12 6 1.6379 -3.6046 -2.8319 13 6 2.3212 -4.6862 -2.0005 14 6 2.9394 -4.1961 -0.7591 15 1 3.6646 -3.4196 -1.0022 16 7 3.6226 -5.3043 -0.0873 17 6 4.6598 -5.0562 0.7367 18 8 5.0274 -3.9154 0.9224 19 6 5.3630 -6.1963 1.4273 20 1 5.7744 -6.8946 0.6985 21 6 6.4743 -5.6676 2.3748 22 6 6.5185 -6.8016 3.4335 23 8 5.1559 -7.2296 3.5862 24 6 4.4100 -6.9190 2.4035 25 6 1.8599 -3.6117 0.1851 26 1 -0.4850 0.8401 -0.0004 27 1 -0.7046 -2.3688 -0.6700 28 1 0.2156 -1.3136 -1.7581 29 1 -0.4143 -3.1157 -3.1556 30 1 -0.1322 -4.3234 -1.8804 31 1 2.1969 -2.6727 -2.7462 32 1 1.6057 -3.9148 -3.8763 33 1 3.0937 -5.1550 -2.6101 34 1 1.5792 -5.4419 -1.7429 35 1 3.3285 -6.2167 -0.2355 36 1 7.4262 -5.5770 1.8515 37 1 6.1856 -4.7195 2.8283 38 1 6.9043 -6.4223 4.3798 39 1 7.1364 -7.6258 3.0770 40 1 3.5735 -6.2669 2.6545 41 1 4.0392 -7.8367 1.9469 42 1 2.2939 -3.4391 1.1699 43 1 1.0333 -4.3170 0.2718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034124719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:33 Heat of formation + Delta-G solvation = -65.197301 kcal Electronic energy + Delta-G solvation = -23466.602996 eV Core-core repulsion = 20126.108620 eV Total energy + Delta-G solvation = -3340.494377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32807 -38.79835 -37.48159 -34.58275 -33.24689 -32.43076 -30.91849 -30.31018 -29.09956 -26.00295 -24.44038 -23.60125 -22.84076 -22.11989 -20.22647 -19.81881 -19.15673 -17.45858 -16.79362 -16.55240 -16.03599 -15.51183 -15.05221 -14.86413 -14.41443 -14.20086 -13.64345 -13.54096 -13.36598 -13.17266 -12.75022 -12.53010 -12.19814 -12.11745 -11.65494 -11.58046 -11.39080 -11.10919 -11.05709 -10.89623 -10.75268 -10.55875 -10.13240 -10.10908 -9.80922 -9.72486 -9.63613 -9.57067 -9.45515 -8.82895 -8.30251 -6.62007 -5.73081 -3.16369 2.81631 3.30176 3.43145 3.50202 3.54485 3.72890 4.18181 4.56831 4.69088 4.73838 4.95915 5.03622 5.10782 5.24149 5.35275 5.44901 5.48165 5.52572 5.53978 5.62025 5.73680 5.75544 5.98496 6.03064 6.04565 6.13709 6.30089 6.38280 6.59163 6.61899 6.70915 6.74621 6.75316 6.82374 6.92682 7.10769 7.44716 7.71983 7.76750 7.94511 8.48591 8.54110 9.30099 9.95311 10.39227 11.34582 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.005038 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.501410 B = 5556.627963 C = 6504.967824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.006 3.994 3 Si 0.898 3.102 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.584 5.584 10 C 0.177 3.823 11 C -0.143 4.143 12 C -0.100 4.100 13 C -0.111 4.111 14 C 0.113 3.887 15 H 0.088 0.912 16 N -0.722 5.722 17 C 0.517 3.483 18 O -0.523 6.523 19 C -0.148 4.148 20 H 0.107 0.893 21 C -0.136 4.136 22 C 0.050 3.950 23 O -0.382 6.382 24 C 0.064 3.936 25 C 0.159 3.841 26 H 0.252 0.748 27 H 0.025 0.975 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.391 0.609 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.055 -15.869 -1.093 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.728 3.272 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.305 5.305 10 C 0.052 3.948 11 C -0.182 4.182 12 C -0.139 4.139 13 C -0.149 4.149 14 C 0.007 3.993 15 H 0.106 0.894 16 N -0.373 5.373 17 C 0.302 3.698 18 O -0.398 6.398 19 C -0.169 4.169 20 H 0.125 0.875 21 C -0.174 4.174 22 C -0.026 4.026 23 O -0.301 6.301 24 C -0.013 4.013 25 C 0.029 3.971 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.224 0.776 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.085 -14.973 -0.771 17.034 hybrid contribution 0.345 0.451 -0.422 0.707 sum 8.430 -14.522 -1.193 16.834 Atomic orbital electron populations 1.70093 1.05202 1.25335 1.54295 1.25002 0.95206 0.98339 1.00730 0.86319 0.79450 0.83857 0.77538 1.21532 1.21855 1.20261 1.19317 0.93122 0.84999 1.41154 0.91310 1.43593 1.34190 1.01423 1.51248 1.21108 0.88834 0.95865 0.89023 1.22130 0.95794 1.00636 0.99686 1.20825 0.97126 0.99379 0.96550 1.20576 0.99323 0.98948 0.96097 1.21282 0.96561 0.87975 0.93525 0.89433 1.46198 1.33228 1.10500 1.47324 1.20059 0.80375 0.89867 0.79537 1.90776 1.64856 1.22441 1.61760 1.22942 0.97543 0.97521 0.98925 0.87519 1.23213 0.98360 1.00072 0.95767 1.23470 0.83804 0.95660 0.99672 1.88407 1.21471 1.82613 1.37608 1.23066 0.94341 0.99055 0.84864 1.20898 0.93216 0.88423 0.94586 0.93796 0.95671 0.90844 0.92907 0.93685 0.90474 0.93400 0.93477 0.92839 0.77573 0.89467 0.88624 0.89417 0.92152 0.90457 0.90716 0.93409 0.95111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 11.12 55.49 0.62 -25.83 16 2 C 0.01 0.16 4.82 -17.43 -0.08 0.07 16 3 Si 0.90 22.45 29.59 -169.99 -5.03 17.42 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.26 -7.18 9.43 -15.06 -0.14 -7.32 16 8 H 0.07 2.00 7.88 -52.49 -0.41 1.59 16 9 N -0.58 -14.48 2.26 -171.88 -0.39 -14.87 16 10 C 0.18 4.15 4.71 -2.76 -0.01 4.14 16 11 C -0.14 -2.60 5.71 -27.12 -0.15 -2.75 16 12 C -0.10 -1.69 5.51 -28.01 -0.15 -1.84 16 13 C -0.11 -1.68 4.55 -29.79 -0.14 -1.82 16 14 C 0.11 1.99 2.34 -69.78 -0.16 1.82 16 15 H 0.09 1.87 7.56 -51.93 -0.39 1.48 16 16 N -0.72 -10.02 5.03 -55.62 -0.28 -10.30 16 17 C 0.52 7.85 6.97 -10.99 -0.08 7.77 16 18 O -0.52 -10.61 15.38 5.55 0.09 -10.53 16 19 C -0.15 -1.61 3.38 -89.82 -0.30 -1.92 16 20 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 21 C -0.14 -1.49 6.28 -24.34 -0.15 -1.65 16 22 C 0.05 0.48 7.78 38.33 0.30 0.78 16 23 O -0.38 -4.67 11.36 -35.23 -0.40 -5.07 16 24 C 0.06 0.69 7.38 37.88 0.28 0.97 16 25 C 0.16 3.36 5.24 -4.09 -0.02 3.34 16 26 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 28 H 0.07 1.93 6.39 -51.93 -0.33 1.60 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.76 7.31 -51.93 -0.38 0.38 16 31 H 0.08 1.53 7.49 -51.93 -0.39 1.14 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.74 7.35 -51.93 -0.38 0.35 16 35 H 0.39 4.01 8.58 -40.82 -0.35 3.66 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.29 7.42 -51.93 -0.39 0.91 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.94 7.81 -51.93 -0.41 0.54 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 1.13 7.98 -51.93 -0.41 0.71 16 43 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -32.40 335.48 -8.36 -40.76 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.20 Total: 1.76 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.82 Total: 1.59 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.05 Total: -50.99 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.31 Total: -15.59 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.40 -8.36 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034124719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.433 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds