Wall clock time and date at job start Tue Mar 31 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99904 * 2 1 4 4 H 1.48492 * 109.47227 * 274.33118 * 3 2 1 5 5 H 1.48503 * 109.46884 * 34.33464 * 3 2 1 6 6 H 1.48495 * 109.47053 * 154.32982 * 3 2 1 7 7 C 1.38805 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00636 * 196.92719 * 7 2 1 9 9 N 1.36946 * 119.99792 * 17.19741 * 7 2 1 10 10 C 1.47605 * 118.64127 * 26.59058 * 9 7 2 11 11 C 1.54298 * 111.94509 * 137.77410 * 10 9 7 12 12 C 1.50880 * 110.23402 * 319.69905 * 11 10 9 13 13 C 1.52574 * 109.35609 * 91.79661 * 12 11 10 14 14 C 1.47091 * 114.32378 * 274.98446 * 13 12 11 15 15 H 1.08995 * 109.19260 * 302.63102 * 14 13 12 16 16 N 1.46505 * 109.32700 * 183.06271 * 14 13 12 17 17 C 1.34773 * 119.99966 * 154.13070 * 16 14 13 18 18 O 1.21286 * 120.00235 * 0.02562 * 17 16 14 19 19 C 1.50700 * 120.00002 * 180.02562 * 17 16 14 20 20 H 1.09000 * 110.74977 * 59.30404 * 19 17 16 21 21 C 1.55312 * 110.84814 * 182.77682 * 19 17 16 22 22 C 1.55205 * 100.82302 * 152.18104 * 21 19 17 23 23 O 1.43639 * 105.26308 * 323.81347 * 22 21 19 24 24 C 1.43236 * 109.97187 * 24.28643 * 23 22 21 25 25 C 1.44574 * 118.64275 * 206.85380 * 9 7 2 26 26 H 0.97004 * 119.99824 * 0.02562 * 1 2 3 27 27 H 1.09002 * 108.94308 * 258.57688 * 10 9 7 28 28 H 1.08998 * 108.94797 * 17.19914 * 10 9 7 29 29 H 1.08999 * 109.36552 * 199.42007 * 11 10 9 30 30 H 1.08999 * 109.11996 * 79.82317 * 11 10 9 31 31 H 1.09005 * 109.49073 * 331.83530 * 12 11 10 32 32 H 1.08999 * 109.50664 * 211.77054 * 12 11 10 33 33 H 1.08998 * 108.51230 * 153.73639 * 13 12 11 34 34 H 1.08999 * 108.38960 * 36.15481 * 13 12 11 35 35 H 0.97001 * 120.00122 * 334.13555 * 16 14 13 36 36 H 1.08999 * 111.12061 * 270.24216 * 21 19 17 37 37 H 1.08991 * 111.12560 * 34.40499 * 21 19 17 38 38 H 1.09004 * 110.36750 * 204.79635 * 22 21 19 39 39 H 1.09001 * 110.21192 * 82.75856 * 22 21 19 40 40 H 1.08997 * 109.83339 * 238.77146 * 24 23 22 41 41 H 1.09006 * 109.90486 * 117.84196 * 24 23 22 42 42 H 1.08996 * 109.45344 * 30.75073 * 25 9 7 43 43 H 1.08999 * 109.44726 * 150.67227 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4061 2.0993 -1.3960 5 1 1.4964 2.6245 0.7897 6 1 3.5905 1.4155 0.6065 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2225 0.2717 9 7 1.3715 -2.3614 -0.3517 10 6 0.2091 -2.2821 -1.2580 11 6 0.2323 -3.3970 -2.3244 12 6 1.6379 -3.6046 -2.8319 13 6 2.3212 -4.6862 -2.0005 14 6 2.9394 -4.1961 -0.7591 15 1 3.6646 -3.4196 -1.0022 16 7 3.6226 -5.3043 -0.0873 17 6 4.6598 -5.0562 0.7367 18 8 5.0274 -3.9154 0.9224 19 6 5.3630 -6.1963 1.4273 20 1 5.7744 -6.8946 0.6985 21 6 6.4743 -5.6676 2.3748 22 6 6.5185 -6.8016 3.4335 23 8 5.1559 -7.2296 3.5862 24 6 4.4100 -6.9190 2.4035 25 6 1.8599 -3.6117 0.1851 26 1 -0.4850 0.8401 -0.0004 27 1 -0.7046 -2.3688 -0.6700 28 1 0.2156 -1.3136 -1.7581 29 1 -0.4143 -3.1157 -3.1556 30 1 -0.1322 -4.3234 -1.8804 31 1 2.1969 -2.6727 -2.7462 32 1 1.6057 -3.9148 -3.8763 33 1 3.0937 -5.1550 -2.6101 34 1 1.5792 -5.4419 -1.7429 35 1 3.3285 -6.2167 -0.2355 36 1 7.4262 -5.5770 1.8515 37 1 6.1856 -4.7195 2.8283 38 1 6.9043 -6.4223 4.3798 39 1 7.1364 -7.6258 3.0770 40 1 3.5735 -6.2669 2.6545 41 1 4.0392 -7.8367 1.9469 42 1 2.2939 -3.4391 1.1699 43 1 1.0333 -4.3170 0.2718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034124719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:33 Heat of formation + Delta-G solvation = -88.276278 kcal Electronic energy + Delta-G solvation = -23467.603776 eV Core-core repulsion = 20126.108620 eV Total energy + Delta-G solvation = -3341.495156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47392 -39.98660 -38.91506 -36.24441 -34.84806 -33.45407 -32.87084 -31.64927 -30.08371 -27.90741 -25.99950 -25.15215 -24.05150 -23.12087 -21.63105 -21.19451 -20.71564 -18.62717 -18.50239 -17.73135 -17.39226 -16.75342 -16.52020 -16.27466 -15.78766 -15.67800 -15.23080 -14.89174 -14.69013 -14.29650 -14.25993 -14.11927 -13.83284 -13.21824 -13.09986 -13.03788 -12.82935 -12.51966 -12.44882 -12.38288 -12.25400 -12.06207 -11.93173 -11.65940 -11.46828 -11.38660 -11.15764 -10.92562 -10.53838 -10.46708 -10.13669 -8.66002 -7.90300 -5.35908 1.39627 1.40671 1.51141 1.60957 2.13434 2.49049 2.88906 3.21768 3.28500 3.67358 3.79621 3.91410 3.91448 4.11696 4.12133 4.17369 4.28982 4.30535 4.42160 4.50997 4.70202 4.71552 4.74978 4.79097 4.85050 4.91545 4.99307 5.03972 5.11499 5.15725 5.22653 5.27512 5.35644 5.42794 5.61326 5.66052 5.70071 5.80386 5.95210 6.38186 6.62026 7.15977 7.33757 7.92487 8.27256 9.13847 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.005038 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.501410 B = 5556.627963 C = 6504.967824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.041 4.041 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.263 4.263 8 H 0.046 0.954 9 N -0.597 5.597 10 C 0.185 3.815 11 C -0.130 4.130 12 C -0.099 4.099 13 C -0.108 4.108 14 C 0.133 3.867 15 H 0.043 0.957 16 N -0.705 5.705 17 C 0.513 3.487 18 O -0.584 6.584 19 C -0.135 4.135 20 H 0.149 0.851 21 C -0.141 4.141 22 C 0.053 3.947 23 O -0.404 6.404 24 C 0.065 3.935 25 C 0.159 3.841 26 H 0.250 0.750 27 H -0.005 1.005 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.416 0.584 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.111 0.889 42 H 0.010 0.990 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.790 -19.154 -2.559 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.784 3.216 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.393 4.393 8 H 0.064 0.936 9 N -0.319 5.319 10 C 0.060 3.940 11 C -0.169 4.169 12 C -0.137 4.137 13 C -0.146 4.146 14 C 0.026 3.974 15 H 0.062 0.938 16 N -0.357 5.357 17 C 0.299 3.701 18 O -0.463 6.463 19 C -0.156 4.156 20 H 0.167 0.833 21 C -0.179 4.179 22 C -0.023 4.023 23 O -0.323 6.323 24 C -0.012 4.012 25 C 0.031 3.969 26 H 0.060 0.940 27 H 0.013 0.987 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.253 0.747 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.129 0.871 42 H 0.029 0.971 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.819 -18.335 -2.249 20.469 hybrid contribution 0.130 1.461 0.109 1.471 sum 8.949 -16.874 -2.139 19.220 Atomic orbital electron populations 1.70216 1.06176 1.25710 1.55418 1.25619 0.95991 1.00940 1.01110 0.85427 0.78006 0.80402 0.77717 1.20652 1.21516 1.20620 1.19319 0.92348 0.86815 1.40839 0.93614 1.43734 1.34383 1.01702 1.52107 1.20928 0.86960 0.96606 0.89515 1.21991 0.97484 0.99084 0.98330 1.20814 0.95545 0.98346 0.98992 1.20519 1.00684 0.98843 0.94553 1.20691 0.94379 0.88280 0.94059 0.93821 1.45955 1.32496 1.10815 1.46478 1.20898 0.80115 0.90225 0.78818 1.90763 1.66593 1.25335 1.63595 1.22965 0.97057 0.96218 0.99358 0.83309 1.23216 0.99178 0.99037 0.96451 1.23609 0.83166 0.95924 0.99606 1.88382 1.22758 1.82707 1.38500 1.23130 0.93404 1.00121 0.84526 1.20987 0.94557 0.87649 0.93740 0.94042 0.98687 0.94444 0.91071 0.91479 0.94393 0.89777 0.90430 0.89991 0.74655 0.87825 0.92358 0.88951 0.89110 0.92895 0.87082 0.97139 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 11.12 21.65 0.24 -56.23 16 2 C -0.04 -2.40 4.82 84.86 0.41 -1.99 16 3 Si 0.96 47.93 29.59 68.60 2.03 49.96 16 4 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.28 -14.09 7.11 99.48 0.71 -13.39 16 7 C -0.26 -15.52 9.43 84.03 0.79 -14.73 16 8 H 0.05 2.87 7.88 -2.92 -0.02 2.84 16 9 N -0.60 -30.84 2.26 -697.69 -1.58 -32.42 16 10 C 0.18 8.90 4.71 86.61 0.41 9.31 16 11 C -0.13 -4.46 5.71 30.35 0.17 -4.29 16 12 C -0.10 -3.08 5.51 29.76 0.16 -2.92 16 13 C -0.11 -2.90 4.55 28.62 0.13 -2.77 16 14 C 0.13 4.62 2.34 43.79 0.10 4.72 16 15 H 0.04 1.93 7.56 -2.39 -0.02 1.91 16 16 N -0.71 -18.33 5.03 -448.27 -2.26 -20.59 16 17 C 0.51 15.33 6.97 87.66 0.61 15.94 16 18 O -0.58 -24.86 15.38 -3.05 -0.05 -24.91 16 19 C -0.13 -2.63 3.38 -10.28 -0.03 -2.67 16 20 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 21 C -0.14 -2.95 6.28 32.14 0.20 -2.75 16 22 C 0.05 0.90 7.78 72.74 0.57 1.46 16 23 O -0.40 -9.05 11.36 -148.98 -1.69 -10.74 16 24 C 0.06 1.24 7.38 72.45 0.53 1.78 16 25 C 0.16 6.91 5.24 87.38 0.46 7.36 16 26 H 0.25 14.69 8.31 -92.71 -0.77 13.91 16 27 H 0.00 -0.26 8.03 -2.39 -0.02 -0.28 16 28 H 0.04 2.04 6.39 -2.39 -0.02 2.03 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.03 7.31 -2.39 -0.02 2.01 16 31 H 0.04 1.49 7.49 -2.38 -0.02 1.48 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.81 7.35 -2.39 -0.02 1.79 16 35 H 0.42 6.85 8.58 -92.71 -0.80 6.06 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.66 7.42 -2.39 -0.02 1.64 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.26 7.81 -2.39 -0.02 1.24 16 41 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.01 0.51 7.98 -2.39 -0.02 0.49 16 43 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 Total: -1.00 -77.46 335.48 1.41 -76.05 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.20 Total: 10.40 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 4.52 Total: 8.47 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -3.59 Total: -109.24 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.74 Total: -35.65 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -77.46 1.41 -76.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034124719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.230 kcal (2) G-P(sol) polarization free energy of solvation -77.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds