Wall clock time and date at job start Tue Mar 31 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48506 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46942 * 299.99622 * 3 2 1 6 6 H 1.48495 * 109.47348 * 60.00171 * 3 2 1 7 7 C 1.38820 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99870 * 160.42563 * 7 2 1 9 9 N 1.36936 * 119.99959 * 340.42988 * 7 2 1 10 10 C 1.50166 * 120.53874 * 336.67807 * 9 7 2 11 11 C 1.46243 * 107.53460 * 109.56558 * 10 9 7 12 12 C 1.52524 * 114.27432 * 58.40834 * 11 10 9 13 13 C 1.50128 * 105.41959 * 270.59477 * 12 11 10 14 14 C 1.54846 * 110.77776 * 97.70138 * 13 12 11 15 15 H 1.09004 * 109.35252 * 81.32350 * 14 13 12 16 16 N 1.46498 * 109.36009 * 200.90604 * 14 13 12 17 17 C 1.34775 * 120.00241 * 205.00142 * 16 14 13 18 18 O 1.21283 * 119.99754 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00255 * 179.97438 * 17 16 14 20 20 H 1.09003 * 110.45840 * 300.70611 * 19 17 16 21 21 C 1.54504 * 110.51386 * 178.09674 * 19 17 16 22 22 C 1.54479 * 104.06637 * 241.35959 * 21 19 17 23 23 O 1.44426 * 104.80302 * 23.97738 * 22 21 19 24 24 C 1.44789 * 105.29301 * 319.45466 * 23 22 21 25 25 C 1.43430 * 120.53801 * 156.65649 * 9 7 2 26 26 H 0.96992 * 119.99546 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.84873 * 350.06142 * 10 9 7 28 28 H 1.09002 * 109.90279 * 229.10792 * 10 9 7 29 29 H 1.09004 * 108.52050 * 297.16748 * 11 10 9 30 30 H 1.09001 * 108.52170 * 179.64753 * 11 10 9 31 31 H 1.09006 * 110.24969 * 151.62267 * 12 11 10 32 32 H 1.08994 * 110.25010 * 29.57046 * 12 11 10 33 33 H 1.08998 * 109.20999 * 218.02826 * 13 12 11 34 34 H 1.09001 * 109.20392 * 337.38577 * 13 12 11 35 35 H 0.97007 * 120.00016 * 25.00338 * 16 14 13 36 36 H 1.09002 * 110.51119 * 0.02562 * 21 19 17 37 37 H 1.09004 * 110.51147 * 122.57595 * 21 19 17 38 38 H 1.08994 * 110.36978 * 142.81068 * 22 21 19 39 39 H 1.09007 * 110.36869 * 265.14694 * 22 21 19 40 40 H 1.08994 * 110.42768 * 281.77734 * 24 23 22 41 41 H 1.09005 * 110.48550 * 159.32491 * 24 23 22 42 42 H 1.09004 * 108.16316 * 33.30747 * 25 9 7 43 43 H 1.09005 * 108.16164 * 150.08222 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0435 -1.2294 -0.3128 9 7 1.3849 -2.3537 0.3983 10 6 0.1862 -2.2982 1.3010 11 6 -0.9808 -2.6830 0.5079 12 6 -0.8834 -4.0702 -0.1187 13 6 -0.2329 -3.8597 -1.4552 14 6 1.2855 -4.1536 -1.3795 15 1 1.4493 -5.2289 -1.4501 16 7 1.9652 -3.4875 -2.4933 17 6 3.1411 -3.9644 -2.9474 18 8 3.6364 -4.9455 -2.4342 19 6 3.8400 -3.2796 -4.0935 20 1 3.2028 -3.2708 -4.9778 21 6 5.1843 -3.9760 -4.4017 22 6 6.2415 -2.8763 -4.1575 23 8 5.6097 -1.9536 -3.2434 24 6 4.2407 -1.8403 -3.7007 25 6 1.8640 -3.6323 -0.0409 26 1 -0.4849 0.8400 0.0004 27 1 0.0566 -1.2854 1.6824 28 1 0.3145 -2.9926 2.1314 29 1 -1.1141 -1.9515 -0.2892 30 1 -1.8608 -2.6542 1.1504 31 1 -1.8782 -4.4972 -0.2463 32 1 -0.2684 -4.7220 0.5017 33 1 -0.6912 -4.5260 -2.1860 34 1 -0.3830 -2.8265 -1.7683 35 1 1.5690 -2.7030 -2.9039 36 1 5.3433 -4.8159 -3.7254 37 1 5.2118 -4.3115 -5.4385 38 1 7.1367 -3.3042 -3.7064 39 1 6.4896 -2.3741 -5.0926 40 1 4.1821 -1.1805 -4.5664 41 1 3.5998 -1.4734 -2.8989 42 1 2.9480 -3.5736 -0.1389 43 1 1.6343 -4.3652 0.7326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034124721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:36 Heat of formation + Delta-G solvation = -58.204210 kcal Electronic energy + Delta-G solvation = -24248.679249 eV Core-core repulsion = 20908.488115 eV Total energy + Delta-G solvation = -3340.191134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09521 -38.45538 -37.35190 -34.19642 -33.11604 -32.10894 -30.97179 -30.07990 -28.77343 -26.09395 -24.31726 -23.40680 -22.84917 -21.79582 -20.04986 -19.26756 -19.12394 -17.08430 -16.63256 -16.32900 -15.77718 -15.31875 -14.96607 -14.77511 -14.53981 -13.97091 -13.71297 -13.44594 -13.21692 -12.56885 -12.35859 -12.28172 -11.85206 -11.69813 -11.55479 -11.35896 -11.27467 -11.15028 -10.85816 -10.77798 -10.75356 -10.44671 -10.09065 -9.94375 -9.79926 -9.70213 -9.43609 -9.23871 -9.18186 -8.60495 -8.29798 -6.68444 -5.80129 -3.18054 3.06242 3.35855 3.45834 3.50821 3.70415 4.10937 4.50469 4.55121 4.95490 5.02650 5.19044 5.27051 5.33565 5.39862 5.48159 5.50320 5.64432 5.68427 5.76850 5.82526 5.95963 6.01827 6.14697 6.23229 6.24589 6.27596 6.46344 6.54043 6.63244 6.86722 6.88179 6.93383 6.99022 7.05063 7.25235 7.27663 7.61938 7.76157 7.99328 8.10136 8.42626 8.74739 9.19527 9.86979 10.40321 11.26455 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.007670 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.455552 B = 3649.763963 C = 5092.478667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.001 3.999 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.164 3.836 11 C -0.130 4.130 12 C -0.112 4.112 13 C -0.109 4.109 14 C 0.117 3.883 15 H 0.070 0.930 16 N -0.700 5.700 17 C 0.521 3.479 18 O -0.552 6.552 19 C -0.146 4.146 20 H 0.105 0.895 21 C -0.145 4.145 22 C 0.045 3.955 23 O -0.367 6.367 24 C 0.053 3.947 25 C 0.151 3.849 26 H 0.251 0.749 27 H 0.089 0.911 28 H 0.004 0.996 29 H 0.100 0.900 30 H 0.024 0.976 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.400 0.600 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.038 0.962 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 -5.869 -8.371 10.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.367 4.367 8 H 0.083 0.917 9 N -0.303 5.303 10 C 0.041 3.959 11 C -0.168 4.168 12 C -0.150 4.150 13 C -0.147 4.147 14 C 0.010 3.990 15 H 0.088 0.912 16 N -0.349 5.349 17 C 0.306 3.694 18 O -0.431 6.431 19 C -0.168 4.168 20 H 0.123 0.877 21 C -0.183 4.183 22 C -0.032 4.032 23 O -0.286 6.286 24 C -0.025 4.025 25 C 0.021 3.979 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.023 0.977 29 H 0.119 0.881 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.234 0.766 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.057 0.943 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.863 -6.295 -7.774 10.405 hybrid contribution -0.035 1.230 -0.593 1.366 sum 2.828 -5.064 -8.367 10.181 Atomic orbital electron populations 1.69974 1.04960 1.24954 1.54690 1.24848 0.95175 0.97933 1.01674 0.86373 0.79778 0.84447 0.77178 1.20251 1.22003 1.21775 1.19219 0.93454 0.85180 1.38821 0.91659 1.44230 1.33505 1.00795 1.51813 1.20169 0.85407 1.00406 0.89945 1.21001 0.98046 0.95518 1.02259 1.20975 0.98539 0.98926 0.96593 1.21666 0.93476 1.02262 0.97341 1.22803 0.91821 0.95685 0.88736 0.91217 1.45976 1.21795 1.31807 1.35275 1.20076 0.81149 0.84176 0.83995 1.90613 1.65248 1.27446 1.59785 1.22690 0.98461 0.97225 0.98397 0.87705 1.22971 0.92308 1.00222 1.02814 1.23410 0.96670 0.89646 0.93521 1.89266 1.22741 1.64801 1.51758 1.23556 0.84328 0.93630 1.00945 1.20777 0.96973 0.88383 0.91764 0.93922 0.89303 0.97747 0.88135 0.95747 0.93313 0.92448 0.94383 0.90183 0.76585 0.88236 0.90545 0.89184 0.92605 0.91516 0.87345 0.94330 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.44 9.42 55.49 0.52 -22.92 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 3 Si 0.89 20.98 29.60 -169.99 -5.03 15.95 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.06 9.63 -15.06 -0.14 -6.21 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.58 -13.66 2.60 -175.10 -0.46 -14.12 16 10 C 0.16 3.71 5.24 -5.20 -0.03 3.68 16 11 C -0.13 -2.64 5.02 -30.19 -0.15 -2.80 16 12 C -0.11 -1.97 5.76 -28.40 -0.16 -2.14 16 13 C -0.11 -1.93 5.23 -27.19 -0.14 -2.07 16 14 C 0.12 2.18 2.91 -65.98 -0.19 1.99 16 15 H 0.07 1.31 7.58 -51.93 -0.39 0.92 16 16 N -0.70 -12.20 4.82 -51.92 -0.25 -12.45 16 17 C 0.52 9.11 6.93 -10.99 -0.08 9.03 16 18 O -0.55 -11.39 14.95 5.56 0.08 -11.31 16 19 C -0.15 -2.01 3.50 -90.21 -0.32 -2.32 16 20 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 21 C -0.15 -1.84 6.67 -25.17 -0.17 -2.01 16 22 C 0.04 0.56 7.63 37.93 0.29 0.85 16 23 O -0.37 -6.18 11.66 -35.23 -0.41 -6.59 16 24 C 0.05 0.78 7.19 37.93 0.27 1.05 16 25 C 0.15 3.22 4.79 -4.69 -0.02 3.20 16 26 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 27 H 0.09 2.25 6.05 -51.93 -0.31 1.94 16 28 H 0.00 0.09 8.13 -51.93 -0.42 -0.33 16 29 H 0.10 2.33 5.29 -51.93 -0.27 2.06 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.01 6.28 -51.93 -0.33 0.68 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.60 6.59 -51.93 -0.34 1.25 16 35 H 0.40 6.64 8.37 -40.82 -0.34 6.30 16 36 H 0.10 1.49 6.50 -51.93 -0.34 1.15 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.11 1.85 7.59 -51.93 -0.39 1.46 16 42 H 0.04 0.91 7.83 -51.93 -0.41 0.50 16 43 H 0.03 0.72 6.88 -51.93 -0.36 0.36 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -28.73 328.19 -8.36 -37.09 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.84 Total: 7.19 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.93 Total: 2.22 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.18 Total: -49.49 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.33 Total: -17.90 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.73 -8.36 -37.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034124721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.114 kcal (2) G-P(sol) polarization free energy of solvation -28.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds