Wall clock time and date at job start Tue Mar 31 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48506 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46942 * 299.99622 * 3 2 1 6 6 H 1.48495 * 109.47348 * 60.00171 * 3 2 1 7 7 C 1.38820 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99870 * 160.42563 * 7 2 1 9 9 N 1.36936 * 119.99959 * 340.42988 * 7 2 1 10 10 C 1.50166 * 120.53874 * 336.67807 * 9 7 2 11 11 C 1.46243 * 107.53460 * 109.56558 * 10 9 7 12 12 C 1.52524 * 114.27432 * 58.40834 * 11 10 9 13 13 C 1.50128 * 105.41959 * 270.59477 * 12 11 10 14 14 C 1.54846 * 110.77776 * 97.70138 * 13 12 11 15 15 H 1.09004 * 109.35252 * 81.32350 * 14 13 12 16 16 N 1.46498 * 109.36009 * 200.90604 * 14 13 12 17 17 C 1.34775 * 120.00241 * 205.00142 * 16 14 13 18 18 O 1.21283 * 119.99754 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00255 * 179.97438 * 17 16 14 20 20 H 1.09003 * 110.45840 * 300.70611 * 19 17 16 21 21 C 1.54504 * 110.51386 * 178.09674 * 19 17 16 22 22 C 1.54479 * 104.06637 * 241.35959 * 21 19 17 23 23 O 1.44426 * 104.80302 * 23.97738 * 22 21 19 24 24 C 1.44789 * 105.29301 * 319.45466 * 23 22 21 25 25 C 1.43430 * 120.53801 * 156.65649 * 9 7 2 26 26 H 0.96992 * 119.99546 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.84873 * 350.06142 * 10 9 7 28 28 H 1.09002 * 109.90279 * 229.10792 * 10 9 7 29 29 H 1.09004 * 108.52050 * 297.16748 * 11 10 9 30 30 H 1.09001 * 108.52170 * 179.64753 * 11 10 9 31 31 H 1.09006 * 110.24969 * 151.62267 * 12 11 10 32 32 H 1.08994 * 110.25010 * 29.57046 * 12 11 10 33 33 H 1.08998 * 109.20999 * 218.02826 * 13 12 11 34 34 H 1.09001 * 109.20392 * 337.38577 * 13 12 11 35 35 H 0.97007 * 120.00016 * 25.00338 * 16 14 13 36 36 H 1.09002 * 110.51119 * 0.02562 * 21 19 17 37 37 H 1.09004 * 110.51147 * 122.57595 * 21 19 17 38 38 H 1.08994 * 110.36978 * 142.81068 * 22 21 19 39 39 H 1.09007 * 110.36869 * 265.14694 * 22 21 19 40 40 H 1.08994 * 110.42768 * 281.77734 * 24 23 22 41 41 H 1.09005 * 110.48550 * 159.32491 * 24 23 22 42 42 H 1.09004 * 108.16316 * 33.30747 * 25 9 7 43 43 H 1.09005 * 108.16164 * 150.08222 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0435 -1.2294 -0.3128 9 7 1.3849 -2.3537 0.3983 10 6 0.1862 -2.2982 1.3010 11 6 -0.9808 -2.6830 0.5079 12 6 -0.8834 -4.0702 -0.1187 13 6 -0.2329 -3.8597 -1.4552 14 6 1.2855 -4.1536 -1.3795 15 1 1.4493 -5.2289 -1.4501 16 7 1.9652 -3.4875 -2.4933 17 6 3.1411 -3.9644 -2.9474 18 8 3.6364 -4.9455 -2.4342 19 6 3.8400 -3.2796 -4.0935 20 1 3.2028 -3.2708 -4.9778 21 6 5.1843 -3.9760 -4.4017 22 6 6.2415 -2.8763 -4.1575 23 8 5.6097 -1.9536 -3.2434 24 6 4.2407 -1.8403 -3.7007 25 6 1.8640 -3.6323 -0.0409 26 1 -0.4849 0.8400 0.0004 27 1 0.0566 -1.2854 1.6824 28 1 0.3145 -2.9926 2.1314 29 1 -1.1141 -1.9515 -0.2892 30 1 -1.8608 -2.6542 1.1504 31 1 -1.8782 -4.4972 -0.2463 32 1 -0.2684 -4.7220 0.5017 33 1 -0.6912 -4.5260 -2.1860 34 1 -0.3830 -2.8265 -1.7683 35 1 1.5690 -2.7030 -2.9039 36 1 5.3433 -4.8159 -3.7254 37 1 5.2118 -4.3115 -5.4385 38 1 7.1367 -3.3042 -3.7064 39 1 6.4896 -2.3741 -5.0926 40 1 4.1821 -1.1805 -4.5664 41 1 3.5998 -1.4734 -2.8989 42 1 2.9480 -3.5736 -0.1389 43 1 1.6343 -4.3652 0.7326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034124721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:36 Heat of formation + Delta-G solvation = -76.748082 kcal Electronic energy + Delta-G solvation = -24249.483372 eV Core-core repulsion = 20908.488115 eV Total energy + Delta-G solvation = -3340.995256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39910 -39.87766 -38.84514 -35.83555 -34.77639 -33.33410 -32.81658 -31.55803 -29.95634 -27.91503 -25.86239 -24.93780 -24.28922 -23.00015 -21.61857 -20.77489 -20.60053 -18.54765 -18.35535 -17.47707 -17.17043 -16.77053 -16.60401 -16.19830 -15.90301 -15.64415 -15.35339 -14.90174 -14.79437 -14.04119 -13.89734 -13.63743 -13.41253 -13.24903 -13.18676 -12.86937 -12.65933 -12.41721 -12.34945 -12.30922 -12.29509 -11.89032 -11.86966 -11.76907 -11.29458 -11.13526 -10.97972 -10.91404 -10.52836 -10.43524 -9.93076 -8.57971 -7.79147 -5.18106 1.44049 1.50910 1.59117 1.69608 2.37442 2.55135 3.04567 3.33547 3.47032 3.61957 3.78527 3.93534 4.00767 4.18100 4.21515 4.29716 4.42174 4.46816 4.54318 4.61041 4.65929 4.71067 4.78391 4.82370 4.85341 4.92377 4.93013 5.07163 5.20755 5.22858 5.32904 5.37124 5.48524 5.62071 5.71641 5.76980 5.81456 5.84573 6.24289 6.44722 6.71368 7.22361 7.36018 7.93775 8.44404 9.24360 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.007670 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.455552 B = 3649.763963 C = 5092.478667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.029 4.029 3 Si 0.941 3.059 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.045 0.955 9 N -0.592 5.592 10 C 0.166 3.834 11 C -0.121 4.121 12 C -0.105 4.105 13 C -0.098 4.098 14 C 0.125 3.875 15 H 0.072 0.928 16 N -0.699 5.699 17 C 0.514 3.486 18 O -0.588 6.588 19 C -0.139 4.139 20 H 0.144 0.856 21 C -0.141 4.141 22 C 0.040 3.960 23 O -0.408 6.408 24 C 0.052 3.948 25 C 0.156 3.844 26 H 0.247 0.753 27 H 0.058 0.942 28 H 0.016 0.984 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.404 0.596 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.006 0.994 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 -6.467 -10.230 12.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.226 4.226 3 Si 0.772 3.228 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.223 1.223 7 C -0.371 4.371 8 H 0.063 0.937 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.160 4.160 12 C -0.143 4.143 13 C -0.136 4.136 14 C 0.017 3.983 15 H 0.090 0.910 16 N -0.347 5.347 17 C 0.301 3.699 18 O -0.470 6.470 19 C -0.160 4.160 20 H 0.162 0.838 21 C -0.179 4.179 22 C -0.036 4.036 23 O -0.327 6.327 24 C -0.025 4.025 25 C 0.027 3.973 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.239 0.761 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.024 0.976 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.389 -6.896 -9.648 12.098 hybrid contribution 0.169 1.394 0.049 1.405 sum 2.558 -5.502 -9.599 11.356 Atomic orbital electron populations 1.70087 1.05345 1.24937 1.54966 1.25248 0.95795 0.99551 1.01981 0.85617 0.78352 0.82033 0.76813 1.21079 1.21546 1.22298 1.19090 0.92685 0.86352 1.38930 0.93705 1.44259 1.33880 1.00850 1.52338 1.20113 0.86074 0.99000 0.90475 1.20818 0.97249 0.96679 1.01263 1.20947 1.00224 0.97070 0.96055 1.21545 0.92476 1.01421 0.98185 1.22564 0.92685 0.95587 0.87496 0.90992 1.45973 1.22018 1.31839 1.34858 1.20817 0.80745 0.83741 0.84574 1.90595 1.65968 1.29207 1.61181 1.22765 0.99262 0.96090 0.97924 0.83832 1.22971 0.91472 0.99105 1.04304 1.23653 0.96471 0.89272 0.94184 1.89222 1.23806 1.65947 1.53766 1.23589 0.83231 0.94726 1.00912 1.20728 0.95089 0.87765 0.93741 0.94305 0.92333 0.96624 0.90782 0.94658 0.90446 0.92221 0.91620 0.92497 0.76058 0.91000 0.86827 0.88893 0.89421 0.88153 0.90642 0.97568 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.74 9.42 21.65 0.20 -47.54 16 2 C -0.03 -1.52 4.91 84.86 0.42 -1.10 16 3 Si 0.94 43.83 29.60 68.60 2.03 45.86 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.24 -12.61 9.63 84.04 0.81 -11.80 16 8 H 0.05 2.52 7.89 -2.91 -0.02 2.49 16 9 N -0.59 -28.21 2.60 -707.90 -1.84 -30.05 16 10 C 0.17 7.55 5.24 83.58 0.44 7.98 16 11 C -0.12 -4.84 5.02 28.36 0.14 -4.70 16 12 C -0.11 -3.45 5.76 29.51 0.17 -3.28 16 13 C -0.10 -3.28 5.23 30.30 0.16 -3.12 16 14 C 0.12 4.56 2.91 46.26 0.13 4.70 16 15 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 16 N -0.70 -24.16 4.82 -436.56 -2.11 -26.26 16 17 C 0.51 17.80 6.93 87.66 0.61 18.41 16 18 O -0.59 -24.51 14.95 -3.04 -0.05 -24.55 16 19 C -0.14 -3.56 3.50 -10.53 -0.04 -3.59 16 20 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 21 C -0.14 -3.26 6.67 31.61 0.21 -3.05 16 22 C 0.04 0.94 7.63 72.48 0.55 1.49 16 23 O -0.41 -13.55 11.66 -148.98 -1.74 -15.29 16 24 C 0.05 1.49 7.19 72.49 0.52 2.01 16 25 C 0.16 6.75 4.79 87.58 0.42 7.17 16 26 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 27 H 0.06 3.01 6.05 -2.39 -0.01 3.00 16 28 H 0.02 0.67 8.13 -2.39 -0.02 0.65 16 29 H 0.07 3.41 5.29 -2.38 -0.01 3.40 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.06 1.95 6.28 -2.39 -0.02 1.94 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 2.21 6.59 -2.39 -0.02 2.20 16 35 H 0.40 13.29 8.37 -92.70 -0.78 12.51 16 36 H 0.07 2.10 6.50 -2.39 -0.02 2.09 16 37 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.08 2.63 7.59 -2.38 -0.02 2.62 16 42 H 0.01 0.30 7.83 -2.39 -0.02 0.28 16 43 H 0.04 1.73 6.88 -2.38 -0.02 1.72 16 Total: -1.00 -63.79 328.19 1.28 -62.51 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.23 Total: 24.21 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 4.54 Total: 11.11 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -3.74 Total: -103.86 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.78 Total: -39.84 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -63.79 1.28 -62.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034124721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.240 kcal (2) G-P(sol) polarization free energy of solvation -63.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds