Wall clock time and date at job start Tue Mar 31 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48495 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46983 * 300.00099 * 3 2 1 6 6 H 1.48495 * 109.47328 * 60.00288 * 3 2 1 7 7 C 1.38813 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00198 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99501 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99584 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47276 * 325.00220 * 10 9 7 12 12 C 1.53002 * 109.46958 * 85.00133 * 10 9 7 13 13 C 1.52997 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47164 * 299.99874 * 13 12 10 15 15 H 1.08998 * 109.46505 * 299.99708 * 14 13 12 16 16 N 1.46500 * 109.47249 * 180.02562 * 14 13 12 17 17 C 1.34770 * 120.00256 * 84.99846 * 16 14 13 18 18 O 1.21283 * 120.00026 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99922 * 180.02562 * 17 16 14 20 20 H 1.08992 * 110.43670 * 300.69578 * 19 17 16 21 21 C 1.54814 * 110.48653 * 178.15515 * 19 17 16 22 22 C 1.55226 * 101.98602 * 220.51774 * 21 19 17 23 23 O 1.44382 * 103.56628 * 36.88451 * 22 21 19 24 24 C 1.43743 * 106.97437 * 320.00650 * 23 22 21 25 25 C 1.52997 * 109.47127 * 59.99836 * 14 13 12 26 26 C 1.52996 * 109.46998 * 204.99673 * 10 9 7 27 27 H 0.96998 * 120.00284 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00671 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47097 * 299.99818 * 12 10 9 30 30 H 1.09001 * 109.47142 * 59.99782 * 12 10 9 31 31 H 1.09001 * 109.47375 * 59.99908 * 13 12 10 32 32 H 1.09000 * 109.47140 * 179.97438 * 13 12 10 33 33 H 0.97005 * 119.99374 * 264.99912 * 16 14 13 34 34 H 1.09002 * 110.90972 * 338.63705 * 21 19 17 35 35 H 1.09002 * 110.90966 * 102.24418 * 21 19 17 36 36 H 1.08998 * 110.51947 * 278.38156 * 22 21 19 37 37 H 1.09001 * 110.77792 * 155.49909 * 22 21 19 38 38 H 1.08995 * 109.88255 * 267.09874 * 24 23 22 39 39 H 1.08998 * 109.88059 * 145.93624 * 24 23 22 40 40 H 1.09002 * 109.47153 * 180.02562 * 25 14 13 41 41 H 1.09001 * 109.46832 * 60.00321 * 25 14 13 42 42 H 1.09004 * 109.47368 * 60.00227 * 26 10 9 43 43 H 1.09001 * 109.47372 * 300.00383 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 1 2.9687 -3.5500 -0.5920 12 6 2.4219 -4.0369 1.4340 13 6 3.1875 -5.3615 1.4327 14 6 2.3108 -6.4567 0.8219 15 1 1.4002 -6.5639 1.4112 16 7 3.0436 -7.7252 0.8213 17 6 3.0346 -8.5092 1.9174 18 8 2.4202 -8.1644 2.9046 19 6 3.7890 -9.8139 1.9169 20 1 3.4199 -10.4666 1.1258 21 6 3.6681 -10.5102 3.2943 22 6 5.1047 -11.0590 3.5052 23 8 5.9466 -10.0286 2.9448 24 6 5.3001 -9.5632 1.7483 25 6 1.9469 -6.0766 -0.6147 26 6 1.1809 -4.7516 -0.6133 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 -0.0023 29 1 3.0469 -3.2569 1.8690 30 1 1.5112 -4.1436 2.0233 31 1 4.0982 -5.2543 0.8435 32 1 3.4471 -5.6321 2.4562 33 1 3.5354 -8.0008 0.0318 34 1 3.4084 -9.7918 4.0719 35 1 2.9411 -11.3215 3.2576 36 1 5.2377 -11.9979 2.9678 37 1 5.3158 -11.1922 4.5663 38 1 5.6735 -10.1159 0.8863 39 1 5.4865 -8.4973 1.6169 40 1 1.3220 -6.8566 -1.0498 41 1 2.8577 -5.9694 -1.2040 42 1 0.9216 -4.4808 -1.6368 43 1 0.2702 -4.8583 -0.0239 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034603498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:05 Heat of formation + Delta-G solvation = -90.193957 kcal Electronic energy + Delta-G solvation = -22483.303058 eV Core-core repulsion = 19141.724745 eV Total energy + Delta-G solvation = -3341.578313 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67300 -39.04860 -37.77807 -34.90844 -33.19601 -32.47890 -30.72362 -30.40859 -29.56814 -27.27622 -24.12060 -23.41398 -22.59709 -22.25887 -20.93785 -20.24857 -19.42468 -17.70691 -17.01043 -16.88175 -16.37934 -15.91102 -15.30253 -14.97886 -14.73847 -14.24350 -13.84545 -13.74310 -13.55502 -13.25172 -13.02915 -12.68726 -12.32024 -12.07449 -11.84076 -11.81514 -11.69556 -11.44665 -11.27502 -11.04477 -10.82831 -10.77141 -10.68117 -10.25439 -10.14527 -10.10759 -9.78319 -9.75893 -9.56921 -9.01533 -8.84770 -6.93085 -5.74717 -3.03153 2.45874 2.98787 3.44371 3.50073 3.52222 3.55131 3.99603 4.39874 4.51732 4.60597 4.72189 4.82056 4.86785 4.95762 5.03263 5.25341 5.26227 5.28469 5.37141 5.48685 5.52370 5.60189 5.67727 5.72200 5.81589 5.85735 5.87267 6.02371 6.22844 6.25439 6.29474 6.43232 6.47941 6.56271 6.64475 6.72862 6.99412 7.15692 7.38284 7.72551 8.09478 8.44192 9.55189 10.13783 10.48248 11.48162 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036354 B = 0.003005 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.029805 B = 9314.468716 C = 9598.234753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.144 3.856 15 H 0.087 0.913 16 N -0.724 5.724 17 C 0.520 3.480 18 O -0.532 6.532 19 C -0.149 4.149 20 H 0.109 0.891 21 C -0.141 4.141 22 C 0.046 3.954 23 O -0.373 6.373 24 C 0.058 3.942 25 C -0.118 4.118 26 C -0.121 4.121 27 H 0.254 0.746 28 H 0.383 0.617 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.397 0.603 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.357 -24.231 0.725 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.041 3.959 15 H 0.105 0.895 16 N -0.375 5.375 17 C 0.305 3.695 18 O -0.408 6.408 19 C -0.170 4.170 20 H 0.127 0.873 21 C -0.179 4.179 22 C -0.031 4.031 23 O -0.292 6.292 24 C -0.020 4.020 25 C -0.157 4.157 26 C -0.159 4.159 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.231 0.769 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.225 -23.737 1.507 25.167 hybrid contribution 0.135 0.734 -0.501 0.898 sum 8.360 -23.004 1.006 24.497 Atomic orbital electron populations 1.69670 1.05098 1.25482 1.57960 1.24742 0.95510 0.97674 1.03188 0.86139 0.78794 0.84257 0.77160 1.20575 1.21928 1.21906 1.19288 0.90996 0.84147 1.42277 0.91173 1.42442 1.05795 0.99816 1.88550 1.20236 0.94273 0.85971 0.92775 0.93611 1.22225 0.99765 0.94502 1.00824 1.21895 0.98565 0.95396 1.00431 1.21139 0.95473 0.81771 0.97544 0.89460 1.46180 1.53283 1.21986 1.16030 1.20238 0.80960 0.85125 0.83129 1.90718 1.43372 1.73620 1.33074 1.22776 0.96927 0.96059 1.01258 0.87257 1.23169 0.97608 1.00919 0.96184 1.23657 0.88639 0.90980 0.99821 1.88913 1.45831 1.54748 1.39725 1.23136 0.88950 1.01073 0.88813 1.21756 1.00822 0.98289 0.94817 1.21764 0.98939 0.93462 1.01780 0.93603 0.78315 0.91786 0.92505 0.92306 0.92388 0.76896 0.88323 0.89693 0.92040 0.88567 0.91291 0.89291 0.91920 0.91546 0.91348 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.15 5.12 -53.43 -0.27 -18.43 16 10 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.13 -2.42 5.50 -26.73 -0.15 -2.56 16 13 C -0.12 -1.83 5.49 -26.73 -0.15 -1.98 16 14 C 0.14 1.86 2.45 -67.93 -0.17 1.70 16 15 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 16 N -0.72 -7.34 4.98 -53.81 -0.27 -7.61 16 17 C 0.52 6.03 6.91 -10.99 -0.08 5.96 16 18 O -0.53 -8.53 15.11 5.55 0.08 -8.44 16 19 C -0.15 -1.19 3.43 -90.24 -0.31 -1.50 16 20 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 21 C -0.14 -1.16 6.53 -24.60 -0.16 -1.33 16 22 C 0.05 0.34 7.72 38.34 0.30 0.63 16 23 O -0.37 -3.85 11.52 -35.23 -0.41 -4.26 16 24 C 0.06 0.46 7.33 37.74 0.28 0.74 16 25 C -0.12 -1.42 5.39 -26.71 -0.14 -1.56 16 26 C -0.12 -1.90 5.39 -26.71 -0.14 -2.05 16 27 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.40 2.77 8.60 -40.82 -0.35 2.42 16 34 H 0.10 1.08 6.90 -51.93 -0.36 0.72 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.76 7.63 -51.93 -0.40 0.36 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -33.37 343.60 -8.42 -41.79 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.28 Total: 7.85 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.16 Total: -5.94 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.18 Total: -53.71 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.32 Total: -12.70 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.37 -8.42 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034603498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.404 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds