Wall clock time and date at job start Tue Mar 31 2020 06:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48495 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46983 * 300.00099 * 3 2 1 6 6 H 1.48495 * 109.47328 * 60.00288 * 3 2 1 7 7 C 1.38813 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00198 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99501 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99584 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47276 * 325.00220 * 10 9 7 12 12 C 1.53002 * 109.46958 * 85.00133 * 10 9 7 13 13 C 1.52997 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47164 * 299.99874 * 13 12 10 15 15 H 1.08998 * 109.46505 * 299.99708 * 14 13 12 16 16 N 1.46500 * 109.47249 * 180.02562 * 14 13 12 17 17 C 1.34770 * 120.00256 * 84.99846 * 16 14 13 18 18 O 1.21283 * 120.00026 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99922 * 180.02562 * 17 16 14 20 20 H 1.08992 * 110.43670 * 300.69578 * 19 17 16 21 21 C 1.54814 * 110.48653 * 178.15515 * 19 17 16 22 22 C 1.55226 * 101.98602 * 220.51774 * 21 19 17 23 23 O 1.44382 * 103.56628 * 36.88451 * 22 21 19 24 24 C 1.43743 * 106.97437 * 320.00650 * 23 22 21 25 25 C 1.52997 * 109.47127 * 59.99836 * 14 13 12 26 26 C 1.52996 * 109.46998 * 204.99673 * 10 9 7 27 27 H 0.96998 * 120.00284 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00671 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47097 * 299.99818 * 12 10 9 30 30 H 1.09001 * 109.47142 * 59.99782 * 12 10 9 31 31 H 1.09001 * 109.47375 * 59.99908 * 13 12 10 32 32 H 1.09000 * 109.47140 * 179.97438 * 13 12 10 33 33 H 0.97005 * 119.99374 * 264.99912 * 16 14 13 34 34 H 1.09002 * 110.90972 * 338.63705 * 21 19 17 35 35 H 1.09002 * 110.90966 * 102.24418 * 21 19 17 36 36 H 1.08998 * 110.51947 * 278.38156 * 22 21 19 37 37 H 1.09001 * 110.77792 * 155.49909 * 22 21 19 38 38 H 1.08995 * 109.88255 * 267.09874 * 24 23 22 39 39 H 1.08998 * 109.88059 * 145.93624 * 24 23 22 40 40 H 1.09002 * 109.47153 * 180.02562 * 25 14 13 41 41 H 1.09001 * 109.46832 * 60.00321 * 25 14 13 42 42 H 1.09004 * 109.47368 * 60.00227 * 26 10 9 43 43 H 1.09001 * 109.47372 * 300.00383 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 1 2.9687 -3.5500 -0.5920 12 6 2.4219 -4.0369 1.4340 13 6 3.1875 -5.3615 1.4327 14 6 2.3108 -6.4567 0.8219 15 1 1.4002 -6.5639 1.4112 16 7 3.0436 -7.7252 0.8213 17 6 3.0346 -8.5092 1.9174 18 8 2.4202 -8.1644 2.9046 19 6 3.7890 -9.8139 1.9169 20 1 3.4199 -10.4666 1.1258 21 6 3.6681 -10.5102 3.2943 22 6 5.1047 -11.0590 3.5052 23 8 5.9466 -10.0286 2.9448 24 6 5.3001 -9.5632 1.7483 25 6 1.9469 -6.0766 -0.6147 26 6 1.1809 -4.7516 -0.6133 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 -0.0023 29 1 3.0469 -3.2569 1.8690 30 1 1.5112 -4.1436 2.0233 31 1 4.0982 -5.2543 0.8435 32 1 3.4471 -5.6321 2.4562 33 1 3.5354 -8.0008 0.0318 34 1 3.4084 -9.7918 4.0719 35 1 2.9411 -11.3215 3.2576 36 1 5.2377 -11.9979 2.9678 37 1 5.3158 -11.1922 4.5663 38 1 5.6735 -10.1159 0.8863 39 1 5.4865 -8.4973 1.6169 40 1 1.3220 -6.8566 -1.0498 41 1 2.8577 -5.9694 -1.2040 42 1 0.9216 -4.4808 -1.6368 43 1 0.2702 -4.8583 -0.0239 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034603498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:04 Heat of formation + Delta-G solvation = -114.606360 kcal Electronic energy + Delta-G solvation = -22484.361659 eV Core-core repulsion = 19141.724745 eV Total energy + Delta-G solvation = -3342.636914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52601 -39.99152 -38.93327 -36.39330 -34.70545 -33.36376 -32.34798 -31.70056 -30.35247 -28.73525 -25.71303 -24.45660 -23.69238 -23.27015 -22.16685 -21.26251 -20.69110 -19.15076 -18.38228 -17.59163 -17.30462 -16.97263 -16.58720 -16.01241 -15.73782 -15.60168 -15.37340 -15.09027 -14.88317 -14.57465 -14.05832 -13.81820 -13.48323 -13.26505 -13.10229 -12.97925 -12.86596 -12.46838 -12.42422 -12.33745 -12.27974 -12.10751 -12.04233 -11.87986 -11.66942 -11.48153 -11.22002 -11.03174 -10.85380 -10.51682 -10.05034 -9.00174 -7.94282 -5.22394 1.46254 1.47169 1.56950 1.57540 2.11559 2.56076 2.97598 3.35247 3.38753 3.68204 3.76655 3.85000 3.90099 3.96337 4.15730 4.27661 4.30195 4.35618 4.36368 4.39367 4.53132 4.58490 4.64173 4.70972 4.76920 4.83880 4.86851 4.92257 4.99424 5.11121 5.12372 5.17743 5.24350 5.26789 5.47377 5.53512 5.54723 5.62808 5.87074 6.28839 6.56907 7.26095 7.34096 8.11754 8.33929 9.29693 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036354 B = 0.003005 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.029805 B = 9314.468716 C = 9598.234753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.173 3.827 11 H 0.049 0.951 12 C -0.123 4.123 13 C -0.112 4.112 14 C 0.152 3.848 15 H 0.062 0.938 16 N -0.708 5.708 17 C 0.515 3.485 18 O -0.584 6.584 19 C -0.139 4.139 20 H 0.148 0.852 21 C -0.144 4.144 22 C 0.046 3.954 23 O -0.405 6.405 24 C 0.056 3.944 25 C -0.104 4.104 26 C -0.114 4.114 27 H 0.250 0.750 28 H 0.371 0.629 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.418 0.582 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.128 -26.632 -0.959 28.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.367 4.367 8 H 0.093 0.907 9 N -0.379 5.379 10 C 0.065 3.935 11 H 0.067 0.933 12 C -0.164 4.164 13 C -0.151 4.151 14 C 0.047 3.953 15 H 0.080 0.920 16 N -0.359 5.359 17 C 0.303 3.697 18 O -0.463 6.463 19 C -0.160 4.160 20 H 0.166 0.834 21 C -0.182 4.182 22 C -0.030 4.030 23 O -0.325 6.325 24 C -0.021 4.021 25 C -0.142 4.142 26 C -0.153 4.153 27 H 0.059 0.941 28 H 0.203 0.797 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.256 0.744 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.059 -26.195 -0.211 28.060 hybrid contribution -0.397 1.425 0.074 1.481 sum 9.662 -24.769 -0.137 26.587 Atomic orbital electron populations 1.69825 1.06608 1.25859 1.59984 1.25553 0.96376 1.01067 1.04151 0.85108 0.78303 0.80029 0.76582 1.18983 1.21923 1.22400 1.19660 0.91383 0.85308 1.40310 0.90698 1.42693 1.05460 1.01184 1.88556 1.20490 0.94592 0.85044 0.93406 0.93341 1.22034 0.98895 0.95925 0.99574 1.21758 0.99065 0.94019 1.00278 1.20831 0.94317 0.82412 0.97748 0.91991 1.45941 1.52738 1.20568 1.16690 1.20955 0.80276 0.86165 0.82349 1.90710 1.45672 1.74960 1.35007 1.22832 0.96666 0.94235 1.02268 0.83431 1.23163 0.98838 1.00788 0.95427 1.23801 0.87410 0.91320 1.00464 1.88878 1.46912 1.55794 1.40890 1.23284 0.88524 1.01103 0.89184 1.21654 1.01777 0.96533 0.94258 1.21656 0.98347 0.94260 1.01020 0.94129 0.79738 0.94251 0.94440 0.90473 0.93827 0.74426 0.91830 0.87731 0.89305 0.88382 0.87959 0.90352 0.89124 0.89227 0.91336 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 3 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 7 C -0.23 -13.17 9.93 84.03 0.83 -12.34 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -37.74 5.12 -322.95 -1.65 -39.39 16 10 C 0.17 6.69 2.77 44.99 0.12 6.82 16 11 H 0.05 1.86 8.08 -2.39 -0.02 1.85 16 12 C -0.12 -4.61 5.50 30.59 0.17 -4.45 16 13 C -0.11 -3.25 5.49 30.60 0.17 -3.08 16 14 C 0.15 3.68 2.45 44.99 0.11 3.79 16 15 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 16 N -0.71 -12.45 4.98 -442.53 -2.20 -14.66 16 17 C 0.52 11.14 6.91 87.66 0.61 11.75 16 18 O -0.58 -18.95 15.11 -3.04 -0.05 -19.00 16 19 C -0.14 -1.82 3.43 -10.55 -0.04 -1.86 16 20 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 21 C -0.14 -2.15 6.53 31.98 0.21 -1.95 16 22 C 0.05 0.58 7.72 72.75 0.56 1.15 16 23 O -0.41 -7.59 11.52 -148.98 -1.72 -9.30 16 24 C 0.06 0.72 7.33 72.36 0.53 1.25 16 25 C -0.10 -2.17 5.39 30.61 0.17 -2.00 16 26 C -0.11 -3.48 5.39 30.61 0.17 -3.31 16 27 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.37 20.44 7.80 -92.71 -0.72 19.72 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.42 4.02 8.60 -92.70 -0.80 3.23 16 34 H 0.06 1.42 6.90 -2.39 -0.02 1.40 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 1.15 7.63 -2.39 -0.02 1.13 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -75.65 343.60 0.25 -75.40 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -0.52 Total: 26.69 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 4.07 Total: -8.40 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -3.57 Total: -114.28 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -1.76 Total: -28.30 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -75.65 0.25 -75.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034603498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.205 kcal (2) G-P(sol) polarization free energy of solvation -75.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds