Wall clock time and date at job start Tue Mar 31 2020 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47513 * 325.00256 * 10 9 7 12 12 C 1.53000 * 109.47071 * 85.00073 * 10 9 7 13 13 C 1.53006 * 109.47260 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47005 * 299.99894 * 13 12 10 15 15 H 1.08999 * 109.47623 * 300.00105 * 14 13 12 16 16 N 1.46506 * 109.46691 * 179.97438 * 14 13 12 17 17 C 1.34770 * 119.99588 * 85.00829 * 16 14 13 18 18 O 1.21284 * 120.00399 * 359.97438 * 17 16 14 19 19 C 1.50706 * 120.00102 * 180.02562 * 17 16 14 20 20 H 1.09000 * 110.75010 * 62.01212 * 19 17 16 21 21 C 1.55304 * 110.85038 * 185.71493 * 19 17 16 22 22 C 1.54938 * 100.94195 * 152.32155 * 21 19 17 23 23 O 1.43640 * 105.13825 * 323.55093 * 22 21 19 24 24 C 1.43245 * 109.97173 * 24.43042 * 23 22 21 25 25 C 1.53006 * 109.46904 * 60.00604 * 14 13 12 26 26 C 1.53001 * 109.47051 * 204.99663 * 10 9 7 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47601 * 300.00137 * 12 10 9 30 30 H 1.09004 * 109.47226 * 59.99606 * 12 10 9 31 31 H 1.09005 * 109.46989 * 179.97438 * 13 12 10 32 32 H 1.08996 * 109.46521 * 60.00365 * 13 12 10 33 33 H 0.97000 * 120.00134 * 265.00082 * 16 14 13 34 34 H 1.09005 * 111.12130 * 270.23957 * 21 19 17 35 35 H 1.09000 * 111.12755 * 34.39655 * 21 19 17 36 36 H 1.09003 * 110.31169 * 204.63711 * 22 21 19 37 37 H 1.08999 * 110.39795 * 82.51181 * 22 21 19 38 38 H 1.08994 * 109.82648 * 238.77777 * 24 23 22 39 39 H 1.08997 * 109.83102 * 117.80197 * 24 23 22 40 40 H 1.09003 * 109.47161 * 180.02562 * 25 14 13 41 41 H 1.08996 * 109.47640 * 59.98906 * 25 14 13 42 42 H 1.08999 * 109.47446 * 300.00634 * 26 10 9 43 43 H 1.09005 * 109.46607 * 60.00728 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5504 -0.5888 12 6 2.4221 -4.0355 1.4376 13 6 3.1867 -5.3608 1.4377 14 6 2.3090 -6.4559 0.8283 15 1 1.3983 -6.5618 1.4178 16 7 3.0414 -7.7248 0.8279 17 6 3.0328 -8.5080 1.9245 18 8 2.4192 -8.1624 2.9119 19 6 3.7866 -9.8130 1.9244 20 1 4.8538 -9.6425 1.7828 21 6 3.5178 -10.6068 3.2319 22 6 3.7254 -12.0615 2.7408 23 8 3.2021 -12.0842 1.4033 24 6 3.2342 -10.7663 0.8430 25 6 1.9453 -6.0771 -0.6088 26 6 1.1810 -4.7521 -0.6090 27 1 -0.4850 0.8401 0.0004 28 1 0.3557 -2.3880 0.0005 29 1 3.0469 -3.2551 1.8720 30 1 1.5114 -4.1417 2.0270 31 1 3.4463 -5.6304 2.4614 32 1 4.0973 -5.2548 0.8482 33 1 3.5324 -8.0011 0.0383 34 1 4.2405 -10.3462 4.0052 35 1 2.4973 -10.4523 3.5825 36 1 3.1748 -12.7570 3.3743 37 1 4.7860 -12.3133 2.7364 38 1 2.2272 -10.4604 0.5597 39 1 3.8859 -10.7518 -0.0306 40 1 1.3196 -6.8571 -1.0429 41 1 2.8559 -5.9712 -1.1983 42 1 0.2703 -4.8584 -0.0196 43 1 0.9219 -4.4822 -1.6328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034603499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:08 Heat of formation + Delta-G solvation = -90.974725 kcal Electronic energy + Delta-G solvation = -22386.070700 eV Core-core repulsion = 19044.458531 eV Total energy + Delta-G solvation = -3341.612170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67011 -39.11518 -37.82080 -34.91950 -33.21713 -32.52626 -30.74331 -30.42894 -29.65801 -27.29952 -24.13049 -23.32503 -22.59933 -22.29255 -20.96257 -20.36094 -19.41668 -17.80447 -17.11568 -16.91708 -16.33138 -15.80127 -15.22274 -15.09249 -14.69398 -14.02867 -13.96061 -13.73603 -13.67602 -13.56040 -13.02746 -12.76478 -12.38405 -12.03956 -11.88666 -11.83498 -11.75310 -11.44784 -11.34137 -11.05529 -10.81076 -10.77898 -10.68521 -10.22621 -10.13854 -10.06634 -9.83613 -9.77176 -9.57810 -9.03497 -8.84858 -6.94017 -5.75134 -3.03774 2.42302 2.94499 3.44335 3.46464 3.48802 3.49808 3.89948 4.39331 4.48577 4.59713 4.70726 4.77455 4.82697 4.91854 5.02717 5.22304 5.26485 5.30402 5.37870 5.49067 5.51289 5.58722 5.66329 5.71388 5.76808 5.83152 5.85857 6.00751 6.22129 6.23628 6.28218 6.45718 6.51479 6.55169 6.62897 6.71346 6.98077 7.14419 7.35641 7.70555 8.06077 8.43818 9.54558 10.13197 10.47635 11.47578 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.048961 B = 0.002836 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.740816 B = 9870.763780 C =10075.357706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.178 3.822 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.144 3.856 15 H 0.088 0.912 16 N -0.723 5.723 17 C 0.522 3.478 18 O -0.532 6.532 19 C -0.149 4.149 20 H 0.112 0.888 21 C -0.136 4.136 22 C 0.050 3.950 23 O -0.381 6.381 24 C 0.063 3.937 25 C -0.118 4.118 26 C -0.121 4.121 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.776 -23.277 1.335 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.068 3.932 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.162 4.162 14 C 0.040 3.960 15 H 0.106 0.894 16 N -0.374 5.374 17 C 0.307 3.693 18 O -0.408 6.408 19 C -0.171 4.171 20 H 0.130 0.870 21 C -0.174 4.174 22 C -0.027 4.027 23 O -0.301 6.301 24 C -0.014 4.014 25 C -0.157 4.157 26 C -0.160 4.160 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.350 -23.031 1.926 24.574 hybrid contribution 0.613 1.113 -0.198 1.286 sum 8.962 -21.918 1.728 23.742 Atomic orbital electron populations 1.69653 1.05093 1.25729 1.57742 1.24740 0.95506 0.97661 1.03123 0.86284 0.78528 0.83672 0.77807 1.21714 1.21311 1.21317 1.19193 0.90923 0.84176 1.42612 0.91300 1.42423 1.05789 0.99785 1.88575 1.20230 0.94275 0.85988 0.92742 0.93628 1.22232 0.99776 0.94458 1.00875 1.21891 0.98573 0.95419 1.00358 1.21150 0.95482 0.81724 0.97607 0.89416 1.46200 1.53262 1.21933 1.15977 1.20138 0.80983 0.84891 0.83248 1.90735 1.43255 1.73676 1.33136 1.22964 1.01895 0.94071 0.98132 0.87004 1.23164 1.04855 0.93154 0.96183 1.23449 0.99000 0.96968 0.83246 1.88420 1.85106 1.27705 1.28841 1.23075 1.01489 0.81713 0.95096 1.21745 1.00857 0.98330 0.94781 1.21750 0.98957 0.93443 1.01815 0.93485 0.78298 0.91798 0.92498 0.92447 0.92319 0.76846 0.89272 0.88837 0.89300 0.91884 0.90707 0.90504 0.91852 0.91544 0.91963 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -18.08 5.12 -53.43 -0.27 -18.35 16 10 C 0.18 3.43 2.77 -67.93 -0.19 3.24 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 C -0.13 -2.39 5.50 -26.73 -0.15 -2.54 16 13 C -0.12 -1.79 5.49 -26.73 -0.15 -1.93 16 14 C 0.14 1.83 2.45 -67.93 -0.17 1.67 16 15 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 16 N -0.72 -7.21 5.02 -53.80 -0.27 -7.48 16 17 C 0.52 5.91 6.99 -10.99 -0.08 5.84 16 18 O -0.53 -8.35 15.43 5.55 0.09 -8.27 16 19 C -0.15 -1.19 3.39 -89.82 -0.30 -1.49 16 20 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 21 C -0.14 -1.10 6.23 -24.49 -0.15 -1.25 16 22 C 0.05 0.35 7.78 38.18 0.30 0.65 16 23 O -0.38 -3.64 11.36 -35.23 -0.40 -4.04 16 24 C 0.06 0.48 7.35 37.88 0.28 0.76 16 25 C -0.12 -1.41 5.39 -26.75 -0.14 -1.56 16 26 C -0.12 -1.90 5.39 -26.75 -0.14 -2.04 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.40 2.75 8.59 -40.82 -0.35 2.39 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.94 7.47 -51.93 -0.39 0.55 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.62 7.81 -51.93 -0.41 0.21 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -32.93 344.33 -8.43 -41.35 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.32 Total: 7.66 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.14 Total: -5.90 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.18 Total: -53.43 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.31 Total: -12.30 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.93 -8.43 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034603499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.620 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds