Wall clock time and date at job start Tue Mar 31 2020 06:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47513 * 325.00256 * 10 9 7 12 12 C 1.53000 * 109.47071 * 85.00073 * 10 9 7 13 13 C 1.53006 * 109.47260 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47005 * 299.99894 * 13 12 10 15 15 H 1.08999 * 109.47623 * 300.00105 * 14 13 12 16 16 N 1.46506 * 109.46691 * 179.97438 * 14 13 12 17 17 C 1.34770 * 119.99588 * 85.00829 * 16 14 13 18 18 O 1.21284 * 120.00399 * 359.97438 * 17 16 14 19 19 C 1.50706 * 120.00102 * 180.02562 * 17 16 14 20 20 H 1.09000 * 110.75010 * 62.01212 * 19 17 16 21 21 C 1.55304 * 110.85038 * 185.71493 * 19 17 16 22 22 C 1.54938 * 100.94195 * 152.32155 * 21 19 17 23 23 O 1.43640 * 105.13825 * 323.55093 * 22 21 19 24 24 C 1.43245 * 109.97173 * 24.43042 * 23 22 21 25 25 C 1.53006 * 109.46904 * 60.00604 * 14 13 12 26 26 C 1.53001 * 109.47051 * 204.99663 * 10 9 7 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47601 * 300.00137 * 12 10 9 30 30 H 1.09004 * 109.47226 * 59.99606 * 12 10 9 31 31 H 1.09005 * 109.46989 * 179.97438 * 13 12 10 32 32 H 1.08996 * 109.46521 * 60.00365 * 13 12 10 33 33 H 0.97000 * 120.00134 * 265.00082 * 16 14 13 34 34 H 1.09005 * 111.12130 * 270.23957 * 21 19 17 35 35 H 1.09000 * 111.12755 * 34.39655 * 21 19 17 36 36 H 1.09003 * 110.31169 * 204.63711 * 22 21 19 37 37 H 1.08999 * 110.39795 * 82.51181 * 22 21 19 38 38 H 1.08994 * 109.82648 * 238.77777 * 24 23 22 39 39 H 1.08997 * 109.83102 * 117.80197 * 24 23 22 40 40 H 1.09003 * 109.47161 * 180.02562 * 25 14 13 41 41 H 1.08996 * 109.47640 * 59.98906 * 25 14 13 42 42 H 1.08999 * 109.47446 * 300.00634 * 26 10 9 43 43 H 1.09005 * 109.46607 * 60.00728 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5504 -0.5888 12 6 2.4221 -4.0355 1.4376 13 6 3.1867 -5.3608 1.4377 14 6 2.3090 -6.4559 0.8283 15 1 1.3983 -6.5618 1.4178 16 7 3.0414 -7.7248 0.8279 17 6 3.0328 -8.5080 1.9245 18 8 2.4192 -8.1624 2.9119 19 6 3.7866 -9.8130 1.9244 20 1 4.8538 -9.6425 1.7828 21 6 3.5178 -10.6068 3.2319 22 6 3.7254 -12.0615 2.7408 23 8 3.2021 -12.0842 1.4033 24 6 3.2342 -10.7663 0.8430 25 6 1.9453 -6.0771 -0.6088 26 6 1.1810 -4.7521 -0.6090 27 1 -0.4850 0.8401 0.0004 28 1 0.3557 -2.3880 0.0005 29 1 3.0469 -3.2551 1.8720 30 1 1.5114 -4.1417 2.0270 31 1 3.4463 -5.6304 2.4614 32 1 4.0973 -5.2548 0.8482 33 1 3.5324 -8.0011 0.0383 34 1 4.2405 -10.3462 4.0052 35 1 2.4973 -10.4523 3.5825 36 1 3.1748 -12.7570 3.3743 37 1 4.7860 -12.3133 2.7364 38 1 2.2272 -10.4604 0.5597 39 1 3.8859 -10.7518 -0.0306 40 1 1.3196 -6.8571 -1.0429 41 1 2.8559 -5.9712 -1.1983 42 1 0.2703 -4.8584 -0.0196 43 1 0.9219 -4.4822 -1.6328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034603499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:07 Heat of formation + Delta-G solvation = -114.764992 kcal Electronic energy + Delta-G solvation = -22387.102324 eV Core-core repulsion = 19044.458531 eV Total energy + Delta-G solvation = -3342.643793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51155 -40.02301 -38.97433 -36.39019 -34.70387 -33.40197 -32.35162 -31.69935 -30.43277 -28.75251 -25.71565 -24.42868 -23.61356 -23.25203 -22.20039 -21.33641 -20.70349 -19.14448 -18.46444 -17.67839 -17.32625 -16.93531 -16.48298 -15.95358 -15.84187 -15.47470 -15.31477 -15.08606 -14.74774 -14.57203 -14.27979 -14.04214 -13.49655 -13.23536 -13.10161 -13.08591 -12.79968 -12.52846 -12.45080 -12.36004 -12.22808 -12.17476 -12.04106 -11.94267 -11.66138 -11.46342 -11.21312 -10.95816 -10.81519 -10.47921 -10.05517 -8.99706 -7.93493 -5.21797 1.46408 1.49450 1.54985 1.55416 2.08788 2.56634 2.88555 3.26311 3.39176 3.68666 3.77560 3.84828 3.90189 3.93184 4.13283 4.20810 4.28558 4.30535 4.36902 4.39705 4.53160 4.59286 4.64878 4.70945 4.79533 4.84489 4.87174 4.92004 5.00047 5.11269 5.13280 5.14479 5.24727 5.27332 5.46792 5.53039 5.54687 5.63566 5.95827 6.29237 6.54967 7.23681 7.34490 8.12462 8.34479 9.30092 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.048961 B = 0.002836 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.740816 B = 9870.763780 C =10075.357706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.971 3.029 4 H -0.297 1.297 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.173 3.827 11 H 0.049 0.951 12 C -0.124 4.124 13 C -0.111 4.111 14 C 0.151 3.849 15 H 0.061 0.939 16 N -0.707 5.707 17 C 0.520 3.480 18 O -0.582 6.582 19 C -0.139 4.139 20 H 0.143 0.857 21 C -0.139 4.139 22 C 0.051 3.949 23 O -0.404 6.404 24 C 0.064 3.936 25 C -0.105 4.105 26 C -0.114 4.114 27 H 0.250 0.750 28 H 0.371 0.629 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.418 0.582 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.224 -25.063 0.106 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.223 1.223 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.379 5.379 10 C 0.065 3.935 11 H 0.067 0.933 12 C -0.165 4.165 13 C -0.150 4.150 14 C 0.046 3.954 15 H 0.080 0.920 16 N -0.358 5.358 17 C 0.307 3.693 18 O -0.462 6.462 19 C -0.161 4.161 20 H 0.161 0.839 21 C -0.177 4.177 22 C -0.025 4.025 23 O -0.324 6.324 24 C -0.013 4.013 25 C -0.143 4.143 26 C -0.153 4.153 27 H 0.059 0.941 28 H 0.202 0.798 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.256 0.744 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.860 -24.875 0.664 27.150 hybrid contribution -0.143 1.604 0.226 1.626 sum 10.718 -23.271 0.889 25.636 Atomic orbital electron populations 1.69817 1.06628 1.26008 1.59840 1.25561 0.96365 1.01100 1.04097 0.85240 0.77201 0.79343 0.78181 1.22329 1.20668 1.20129 1.19595 0.91394 0.85318 1.40600 0.90662 1.42681 1.05440 1.01184 1.88607 1.20489 0.94557 0.84986 0.93497 0.93305 1.22037 0.98936 0.96011 0.99472 1.21752 0.99011 0.93794 1.00465 1.20843 0.94380 0.82441 0.97696 0.92044 1.45961 1.52728 1.20550 1.16609 1.20761 0.80267 0.85777 0.82509 1.90726 1.45402 1.74956 1.35072 1.22981 1.02942 0.91888 0.98240 0.83925 1.23156 1.03593 0.94203 0.96754 1.23560 1.00291 0.96226 0.82396 1.88394 1.85621 1.28613 1.29809 1.23171 1.01641 0.80850 0.95644 1.21645 1.01799 0.96501 0.94379 1.21642 0.98374 0.94304 1.00995 0.94128 0.79777 0.94140 0.94491 0.93441 0.90335 0.74430 0.88260 0.91540 0.88802 0.89724 0.91775 0.87602 0.89322 0.89159 0.93083 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.38 13.06 21.65 0.28 -60.09 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 3 Si 0.97 46.54 29.55 68.60 2.03 48.56 16 4 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.24 -13.23 9.93 84.03 0.83 -12.40 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -37.56 5.12 -322.95 -1.65 -39.22 16 10 C 0.17 6.63 2.77 44.99 0.12 6.75 16 11 H 0.05 1.85 8.08 -2.39 -0.02 1.84 16 12 C -0.12 -4.53 5.50 30.60 0.17 -4.36 16 13 C -0.11 -3.09 5.49 30.60 0.17 -2.92 16 14 C 0.15 3.59 2.45 44.99 0.11 3.71 16 15 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 16 N -0.71 -12.13 5.02 -442.52 -2.22 -14.35 16 17 C 0.52 10.90 6.99 87.66 0.61 11.52 16 18 O -0.58 -18.32 15.43 -3.04 -0.05 -18.36 16 19 C -0.14 -1.84 3.39 -10.28 -0.03 -1.88 16 20 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 21 C -0.14 -2.06 6.23 32.05 0.20 -1.86 16 22 C 0.05 0.62 7.78 72.64 0.56 1.18 16 23 O -0.40 -6.79 11.36 -148.98 -1.69 -8.48 16 24 C 0.06 0.79 7.35 72.45 0.53 1.32 16 25 C -0.10 -2.19 5.39 30.58 0.16 -2.02 16 26 C -0.11 -3.48 5.39 30.58 0.16 -3.32 16 27 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.37 20.38 7.80 -92.71 -0.72 19.65 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.42 3.94 8.59 -92.71 -0.80 3.14 16 34 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.07 1.35 7.47 -2.39 -0.02 1.33 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 0.92 7.81 -2.39 -0.02 0.90 16 39 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -73.78 344.33 0.25 -73.53 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.52 Total: 26.82 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 4.08 Total: -8.41 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -3.59 Total: -113.66 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -1.74 Total: -26.85 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -73.78 0.25 -73.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034603499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.239 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds