Wall clock time and date at job start Tue Mar 31 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86789 * 119.99901 * 2 1 4 4 H 1.48504 * 109.47300 * 269.99835 * 3 2 1 5 5 H 1.48504 * 109.47436 * 29.99951 * 3 2 1 6 6 H 1.48507 * 109.47098 * 149.99663 * 3 2 1 7 7 C 1.38818 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99719 * 196.91012 * 7 2 1 9 9 N 1.36937 * 120.00112 * 16.90899 * 7 2 1 10 10 C 1.47151 * 120.97809 * 206.24789 * 9 7 2 11 11 C 1.53301 * 108.38171 * 230.51304 * 10 9 7 12 12 O 1.42964 * 109.22519 * 307.70198 * 11 10 9 13 13 C 1.42961 * 114.16669 * 62.57614 * 12 11 10 14 14 H 1.09003 * 109.55489 * 57.37455 * 13 12 11 15 15 C 1.52998 * 109.51099 * 177.49455 * 13 12 11 16 16 N 1.46494 * 109.47708 * 299.75149 * 15 13 12 17 17 C 1.34778 * 120.00434 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99942 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99857 * 179.97438 * 17 16 15 20 20 C 1.54261 * 110.03599 * 297.90284 * 19 17 16 21 21 C 1.54960 * 104.16452 * 217.13753 * 20 19 17 22 22 C 1.54898 * 102.77168 * 37.88893 * 21 20 19 23 23 C 1.53875 * 110.02922 * 180.68621 * 19 17 16 24 24 C 1.47148 * 120.98139 * 26.22680 * 9 7 2 25 25 H 0.96994 * 119.99590 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.68455 * 350.23242 * 10 9 7 27 27 H 1.08998 * 109.67785 * 110.76178 * 10 9 7 28 28 H 1.08999 * 109.51170 * 67.62305 * 11 10 9 29 29 H 1.08994 * 109.51300 * 187.77532 * 11 10 9 30 30 H 1.09003 * 109.46821 * 179.74637 * 15 13 12 31 31 H 1.09001 * 109.46973 * 59.75241 * 15 13 12 32 32 H 0.97007 * 119.99675 * 359.97438 * 16 15 13 33 33 H 1.09007 * 110.01622 * 59.30144 * 19 17 16 34 34 H 1.08999 * 110.48720 * 335.79011 * 20 19 17 35 35 H 1.09001 * 110.48103 * 98.42564 * 20 19 17 36 36 H 1.08998 * 110.71911 * 279.57988 * 21 20 19 37 37 H 1.08994 * 110.76627 * 156.22451 * 21 20 19 38 38 H 1.09008 * 110.48243 * 203.40405 * 22 21 20 39 39 H 1.09002 * 110.59565 * 80.82139 * 22 21 20 40 40 H 1.08993 * 110.03380 * 238.57017 * 23 19 17 41 41 H 1.09005 * 110.03528 * 359.95625 * 23 19 17 42 42 H 1.09000 * 109.68275 * 9.76193 * 24 9 7 43 43 H 1.08997 * 109.71660 * 249.22595 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0553 -1.2223 0.2726 9 7 1.3700 -2.3626 -0.3439 10 6 1.8340 -3.6633 0.1643 11 6 1.9812 -4.6217 -1.0231 12 8 0.7648 -4.6308 -1.7742 13 6 0.4243 -3.3682 -2.3520 14 1 1.2370 -3.0300 -2.9948 15 6 -0.8548 -3.5130 -3.1790 16 7 -0.6370 -4.4903 -4.2483 17 6 -1.6330 -4.7814 -5.1084 18 8 -2.7098 -4.2345 -4.9969 19 6 -1.4087 -5.7864 -6.2088 20 6 -0.2968 -5.2924 -7.1571 21 6 -0.7701 -5.7413 -8.5627 22 6 -2.3012 -5.5161 -8.4965 23 6 -2.6826 -5.9290 -7.0600 24 6 0.1974 -2.3457 -1.2327 25 1 -0.4849 0.8400 -0.0004 26 1 2.7974 -3.5416 0.6593 27 1 1.1060 -4.0623 0.8707 28 1 2.8002 -4.2885 -1.6605 29 1 2.1900 -5.6266 -0.6562 30 1 -1.1163 -2.5490 -3.6154 31 1 -1.6667 -3.8529 -2.5359 32 1 0.2243 -4.9275 -4.3377 33 1 -1.1345 -6.7514 -5.7825 34 1 -0.2115 -4.2067 -7.1121 35 1 0.6546 -5.7614 -6.9063 36 1 -0.5414 -6.7940 -8.7287 37 1 -0.3215 -5.1204 -9.3381 38 1 -2.8115 -6.1482 -9.2234 39 1 -2.5423 -4.4671 -8.6688 40 1 -3.0261 -6.9633 -7.0475 41 1 -3.4634 -5.2719 -6.6767 42 1 0.0770 -1.3513 -1.6627 43 1 -0.6960 -2.6119 -0.6679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035263709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:51 Heat of formation + Delta-G solvation = -76.295222 kcal Electronic energy + Delta-G solvation = -22776.132196 eV Core-core repulsion = 19435.156578 eV Total energy + Delta-G solvation = -3340.975619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06059 -38.56130 -37.09569 -34.79683 -34.30917 -31.43655 -31.06152 -29.33032 -28.78915 -27.29759 -25.40504 -23.32415 -22.20423 -21.37977 -20.81761 -19.92138 -19.22929 -17.39597 -16.98762 -16.03899 -16.00108 -15.46192 -15.12004 -14.83964 -14.52262 -14.33876 -13.92969 -13.60987 -13.40721 -13.27508 -12.97448 -12.80292 -12.25885 -11.76321 -11.64372 -11.38370 -11.29355 -11.24231 -11.11821 -10.94471 -10.86801 -10.75388 -10.64335 -10.43559 -10.27512 -10.04821 -9.70209 -9.59331 -9.09015 -8.82173 -8.57543 -6.78887 -5.86979 -3.31093 2.80343 3.32071 3.36817 3.40112 3.41457 4.23591 4.33035 4.41670 4.44725 4.63626 5.08313 5.17909 5.20344 5.28044 5.32868 5.35411 5.45363 5.49499 5.53866 5.61545 5.66145 5.74174 5.83782 5.89524 5.91970 5.99325 6.03132 6.10267 6.13567 6.22194 6.26045 6.36664 6.48753 6.69936 6.75824 7.04230 7.45468 7.68186 7.71261 7.81745 8.30283 8.40757 9.08039 9.70964 10.27941 11.21040 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.003677 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.665191 B = 7612.082338 C = 8072.709795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.390 6.390 13 C 0.055 3.945 14 H 0.055 0.945 15 C 0.132 3.868 16 N -0.719 5.719 17 C 0.514 3.486 18 O -0.545 6.545 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.119 4.119 24 C 0.152 3.848 25 H 0.256 0.744 26 H 0.062 0.938 27 H 0.027 0.973 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.402 0.598 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 -12.550 -13.954 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.319 5.319 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.004 4.004 14 H 0.073 0.927 15 C 0.008 3.992 16 N -0.369 5.369 17 C 0.300 3.700 18 O -0.422 6.422 19 C -0.135 4.135 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.157 4.157 24 C 0.026 3.974 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.236 0.764 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.444 -12.138 -13.829 18.406 hybrid contribution 1.065 0.875 0.218 1.396 sum 0.621 -11.264 -13.611 17.678 Atomic orbital electron populations 1.70023 1.05247 1.25798 1.53451 1.25071 0.95367 0.98527 1.00639 0.86239 0.79057 0.83403 0.77757 1.21333 1.21618 1.20393 1.19201 0.92658 0.84474 1.42351 0.91311 1.44055 1.33721 1.01397 1.52679 1.21602 0.98616 0.87562 0.93971 1.23005 0.86181 0.99595 0.94011 1.87776 1.42152 1.31610 1.69434 1.23143 0.95025 0.86424 0.95809 0.92673 1.21411 0.97626 0.92480 0.87709 1.45971 1.15616 1.44296 1.31014 1.20557 0.83988 0.83008 0.82464 1.90663 1.25273 1.53050 1.73263 1.21943 0.97963 0.98613 0.94964 1.22380 0.97106 1.01555 0.94353 1.22510 0.95878 1.01200 0.96503 1.22365 0.95661 1.01559 0.96596 1.22159 0.97187 1.02238 0.94132 1.21307 0.89462 0.97615 0.89037 0.93378 0.91976 0.95554 0.93874 0.90020 0.90106 0.90826 0.76433 0.88526 0.91021 0.90873 0.91333 0.91412 0.91672 0.91525 0.91622 0.89141 0.88598 0.95074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 11.14 55.49 0.62 -25.22 16 2 C 0.00 0.08 4.95 -17.42 -0.09 0.00 16 3 Si 0.91 21.34 29.59 -169.99 -5.03 16.31 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.96 9.65 -15.06 -0.15 -7.10 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.59 -14.79 3.05 -171.83 -0.52 -15.32 16 10 C 0.11 2.25 6.74 -3.53 -0.02 2.23 16 11 C 0.05 0.86 6.99 37.31 0.26 1.12 16 12 O -0.39 -7.20 10.14 -35.23 -0.36 -7.55 16 13 C 0.06 1.05 2.86 -26.58 -0.08 0.97 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 15 C 0.13 2.26 5.37 -4.05 -0.02 2.24 16 16 N -0.72 -10.32 5.39 -60.30 -0.32 -10.65 16 17 C 0.51 7.53 7.00 -10.98 -0.08 7.45 16 18 O -0.54 -10.09 15.21 5.56 0.08 -10.01 16 19 C -0.11 -1.21 3.29 -90.66 -0.30 -1.51 16 20 C -0.12 -1.04 6.29 -25.04 -0.16 -1.20 16 21 C -0.12 -0.96 6.91 -24.70 -0.17 -1.13 16 22 C -0.12 -1.09 6.83 -25.07 -0.17 -1.27 16 23 C -0.12 -1.25 6.40 -25.62 -0.16 -1.41 16 24 C 0.15 3.59 4.73 -3.54 -0.02 3.58 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.40 4.96 8.34 -40.82 -0.34 4.62 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.18 6.39 -51.93 -0.33 0.85 16 42 H 0.10 2.49 6.14 -51.93 -0.32 2.17 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -31.16 340.70 -8.83 -39.99 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.28 Total: 3.34 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.15 Total: 3.97 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.23 Total: -51.18 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.27 Total: -17.56 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.16 -8.83 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035263709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.307 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds