Wall clock time and date at job start Tue Mar 31 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86789 * 119.99901 * 2 1 4 4 H 1.48504 * 109.47300 * 269.99835 * 3 2 1 5 5 H 1.48504 * 109.47436 * 29.99951 * 3 2 1 6 6 H 1.48507 * 109.47098 * 149.99663 * 3 2 1 7 7 C 1.38818 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99719 * 196.91012 * 7 2 1 9 9 N 1.36937 * 120.00112 * 16.90899 * 7 2 1 10 10 C 1.47151 * 120.97809 * 206.24789 * 9 7 2 11 11 C 1.53301 * 108.38171 * 230.51304 * 10 9 7 12 12 O 1.42964 * 109.22519 * 307.70198 * 11 10 9 13 13 C 1.42961 * 114.16669 * 62.57614 * 12 11 10 14 14 H 1.09003 * 109.55489 * 57.37455 * 13 12 11 15 15 C 1.52998 * 109.51099 * 177.49455 * 13 12 11 16 16 N 1.46494 * 109.47708 * 299.75149 * 15 13 12 17 17 C 1.34778 * 120.00434 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99942 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99857 * 179.97438 * 17 16 15 20 20 C 1.54261 * 110.03599 * 297.90284 * 19 17 16 21 21 C 1.54960 * 104.16452 * 217.13753 * 20 19 17 22 22 C 1.54898 * 102.77168 * 37.88893 * 21 20 19 23 23 C 1.53875 * 110.02922 * 180.68621 * 19 17 16 24 24 C 1.47148 * 120.98139 * 26.22680 * 9 7 2 25 25 H 0.96994 * 119.99590 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.68455 * 350.23242 * 10 9 7 27 27 H 1.08998 * 109.67785 * 110.76178 * 10 9 7 28 28 H 1.08999 * 109.51170 * 67.62305 * 11 10 9 29 29 H 1.08994 * 109.51300 * 187.77532 * 11 10 9 30 30 H 1.09003 * 109.46821 * 179.74637 * 15 13 12 31 31 H 1.09001 * 109.46973 * 59.75241 * 15 13 12 32 32 H 0.97007 * 119.99675 * 359.97438 * 16 15 13 33 33 H 1.09007 * 110.01622 * 59.30144 * 19 17 16 34 34 H 1.08999 * 110.48720 * 335.79011 * 20 19 17 35 35 H 1.09001 * 110.48103 * 98.42564 * 20 19 17 36 36 H 1.08998 * 110.71911 * 279.57988 * 21 20 19 37 37 H 1.08994 * 110.76627 * 156.22451 * 21 20 19 38 38 H 1.09008 * 110.48243 * 203.40405 * 22 21 20 39 39 H 1.09002 * 110.59565 * 80.82139 * 22 21 20 40 40 H 1.08993 * 110.03380 * 238.57017 * 23 19 17 41 41 H 1.09005 * 110.03528 * 359.95625 * 23 19 17 42 42 H 1.09000 * 109.68275 * 9.76193 * 24 9 7 43 43 H 1.08997 * 109.71660 * 249.22595 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0553 -1.2223 0.2726 9 7 1.3700 -2.3626 -0.3439 10 6 1.8340 -3.6633 0.1643 11 6 1.9812 -4.6217 -1.0231 12 8 0.7648 -4.6308 -1.7742 13 6 0.4243 -3.3682 -2.3520 14 1 1.2370 -3.0300 -2.9948 15 6 -0.8548 -3.5130 -3.1790 16 7 -0.6370 -4.4903 -4.2483 17 6 -1.6330 -4.7814 -5.1084 18 8 -2.7098 -4.2345 -4.9969 19 6 -1.4087 -5.7864 -6.2088 20 6 -0.2968 -5.2924 -7.1571 21 6 -0.7701 -5.7413 -8.5627 22 6 -2.3012 -5.5161 -8.4965 23 6 -2.6826 -5.9290 -7.0600 24 6 0.1974 -2.3457 -1.2327 25 1 -0.4849 0.8400 -0.0004 26 1 2.7974 -3.5416 0.6593 27 1 1.1060 -4.0623 0.8707 28 1 2.8002 -4.2885 -1.6605 29 1 2.1900 -5.6266 -0.6562 30 1 -1.1163 -2.5490 -3.6154 31 1 -1.6667 -3.8529 -2.5359 32 1 0.2243 -4.9275 -4.3377 33 1 -1.1345 -6.7514 -5.7825 34 1 -0.2115 -4.2067 -7.1121 35 1 0.6546 -5.7614 -6.9063 36 1 -0.5414 -6.7940 -8.7287 37 1 -0.3215 -5.1204 -9.3381 38 1 -2.8115 -6.1482 -9.2234 39 1 -2.5423 -4.4671 -8.6688 40 1 -3.0261 -6.9633 -7.0475 41 1 -3.4634 -5.2719 -6.6767 42 1 0.0770 -1.3513 -1.6627 43 1 -0.6960 -2.6119 -0.6679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035263709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:51 Heat of formation + Delta-G solvation = -97.178767 kcal Electronic energy + Delta-G solvation = -22777.037775 eV Core-core repulsion = 19435.156578 eV Total energy + Delta-G solvation = -3341.881197 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21586 -40.10019 -38.01473 -36.47110 -35.84406 -33.27870 -32.63415 -30.31174 -29.52607 -28.97464 -27.06203 -25.08975 -23.60315 -22.61245 -21.56588 -21.47647 -20.38008 -18.93780 -18.41700 -17.51960 -17.16940 -16.96670 -16.46269 -16.14744 -15.83707 -15.71544 -15.51846 -15.05377 -14.76226 -14.60034 -14.39498 -14.17917 -13.71606 -13.20618 -13.01892 -12.70014 -12.65929 -12.54411 -12.26896 -12.16564 -12.09957 -12.00676 -11.91594 -11.87684 -11.63174 -11.40138 -11.31968 -10.89588 -10.71739 -10.56806 -10.13304 -8.77978 -7.92945 -5.40951 1.45788 1.46998 1.56233 1.64162 2.15451 2.47038 2.77243 3.21847 3.47995 3.54148 3.69631 3.82368 4.02868 4.04996 4.22909 4.30180 4.44219 4.49787 4.50048 4.56510 4.58350 4.59386 4.67451 4.70642 4.81621 4.83677 4.95790 5.01346 5.05476 5.11064 5.21031 5.25793 5.26950 5.33859 5.48625 5.49528 5.50301 5.58307 6.24476 6.30740 6.56970 7.03337 7.25469 7.72419 8.26050 9.12859 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.003677 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.665191 B = 7612.082338 C = 8072.709795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.267 4.267 8 H 0.075 0.925 9 N -0.615 5.615 10 C 0.101 3.899 11 C 0.057 3.943 12 O -0.389 6.389 13 C 0.078 3.922 14 H 0.065 0.935 15 C 0.142 3.858 16 N -0.708 5.708 17 C 0.510 3.490 18 O -0.590 6.590 19 C -0.107 4.107 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.123 4.123 24 C 0.159 3.841 25 H 0.251 0.749 26 H 0.073 0.927 27 H 0.014 0.986 28 H 0.056 0.944 29 H 0.122 0.878 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.415 0.585 33 H 0.122 0.878 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.066 0.934 43 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 -14.531 -15.495 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.396 4.396 8 H 0.093 0.907 9 N -0.339 5.339 10 C -0.024 4.024 11 C -0.021 4.021 12 O -0.309 6.309 13 C 0.019 3.981 14 H 0.083 0.917 15 C 0.017 3.983 16 N -0.359 5.359 17 C 0.298 3.702 18 O -0.471 6.471 19 C -0.128 4.128 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.161 4.161 24 C 0.032 3.968 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.140 0.860 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.252 0.748 33 H 0.140 0.860 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 1.853 -14.169 -15.379 20.993 hybrid contribution 0.348 1.445 0.774 1.675 sum 2.202 -12.724 -14.605 19.495 Atomic orbital electron populations 1.70194 1.06809 1.26087 1.55116 1.25870 0.96078 1.01766 1.00971 0.85203 0.78078 0.79104 0.77681 1.20971 1.22354 1.18992 1.19577 0.93097 0.85515 1.41445 0.90691 1.44364 1.33664 1.02504 1.53404 1.21842 0.98558 0.86464 0.95568 1.23096 0.85812 1.00730 0.92414 1.87790 1.43066 1.30607 1.69401 1.22725 0.95824 0.85447 0.94130 0.91675 1.21062 0.96208 0.92862 0.88157 1.45815 1.16423 1.43592 1.30060 1.21377 0.83025 0.83011 0.82780 1.90652 1.27139 1.54858 1.74427 1.22032 0.98836 0.98178 0.93720 1.22420 0.97449 1.00736 0.94654 1.22513 0.94570 1.02512 0.95834 1.22374 0.97009 1.01003 0.95828 1.22182 0.96289 1.02527 0.95053 1.21082 0.88245 0.97531 0.89918 0.93977 0.90842 0.96766 0.92609 0.85971 0.91111 0.92713 0.74799 0.86030 0.92681 0.88549 0.89423 0.90593 0.90027 0.93016 0.89877 0.92418 0.91571 0.98400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.62 11.14 21.65 0.24 -55.37 16 2 C -0.05 -2.84 4.95 84.86 0.42 -2.43 16 3 Si 0.97 44.30 29.59 68.60 2.03 46.33 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.27 -14.44 9.65 84.03 0.81 -13.63 16 8 H 0.08 3.89 7.88 -2.91 -0.02 3.86 16 9 N -0.61 -30.80 3.05 -697.55 -2.13 -32.92 16 10 C 0.10 4.06 6.74 86.36 0.58 4.64 16 11 C 0.06 1.79 6.99 72.08 0.50 2.29 16 12 O -0.39 -13.58 10.14 -148.98 -1.51 -15.09 16 13 C 0.08 2.93 2.86 30.69 0.09 3.02 16 14 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 15 C 0.14 4.99 5.37 86.38 0.46 5.45 16 16 N -0.71 -19.68 5.39 -463.07 -2.49 -22.17 16 17 C 0.51 14.74 7.00 87.66 0.61 15.35 16 18 O -0.59 -22.59 15.21 -3.03 -0.05 -22.64 16 19 C -0.11 -2.05 3.29 -10.82 -0.04 -2.09 16 20 C -0.11 -1.74 6.29 31.69 0.20 -1.54 16 21 C -0.12 -1.46 6.91 31.91 0.22 -1.24 16 22 C -0.12 -1.98 6.83 31.67 0.22 -1.76 16 23 C -0.12 -2.42 6.40 31.32 0.20 -2.22 16 24 C 0.16 7.75 4.73 86.35 0.41 8.16 16 25 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.07 2.74 7.96 -2.39 -0.02 2.73 16 27 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.42 9.25 8.34 -92.70 -0.77 8.47 16 33 H 0.12 1.78 8.14 -2.38 -0.02 1.77 16 34 H 0.05 1.03 7.85 -2.39 -0.02 1.01 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.54 6.39 -2.38 -0.02 1.53 16 42 H 0.07 3.61 6.14 -2.39 -0.01 3.59 16 43 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: -1.00 -69.94 340.70 1.00 -68.94 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.21 Total: 18.91 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 4.69 Total: 14.02 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -4.38 Total: -110.47 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.56 Total: -37.73 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.94 1.00 -68.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035263709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.234 kcal (2) G-P(sol) polarization free energy of solvation -69.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds