Wall clock time and date at job start Tue Mar 31 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48497 * 109.47237 * 90.00486 * 3 2 1 5 5 H 1.48503 * 109.47087 * 210.00254 * 3 2 1 6 6 H 1.48499 * 109.47388 * 330.00256 * 3 2 1 7 7 C 1.38814 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99402 * 191.25463 * 7 2 1 9 9 N 1.36935 * 119.99968 * 11.25353 * 7 2 1 10 10 C 1.47148 * 120.98251 * 31.38275 * 9 7 2 11 11 C 1.53713 * 108.15945 * 129.43786 * 10 9 7 12 12 O 1.42961 * 109.15153 * 52.53119 * 11 10 9 13 13 C 1.42961 * 114.16908 * 297.29423 * 12 11 10 14 14 C 1.47155 * 120.97836 * 211.66909 * 9 7 2 15 15 H 1.08991 * 109.68264 * 110.78769 * 14 9 7 16 16 C 1.52997 * 109.68101 * 350.23000 * 14 9 7 17 17 N 1.46501 * 109.46971 * 60.21067 * 16 14 9 18 18 C 1.34783 * 119.99866 * 179.97438 * 17 16 14 19 19 O 1.21276 * 119.99929 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99657 * 180.02562 * 18 17 16 21 21 C 1.54268 * 110.03266 * 297.16624 * 20 18 17 22 22 C 1.54893 * 104.19233 * 217.10873 * 21 20 18 23 23 C 1.54889 * 102.75016 * 37.94063 * 22 21 20 24 24 C 1.53876 * 110.02890 * 179.97438 * 20 18 17 25 25 H 0.97005 * 119.99447 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.68053 * 249.20730 * 10 9 7 27 27 H 1.08994 * 109.68531 * 9.76222 * 10 9 7 28 28 H 1.09008 * 109.65044 * 292.56523 * 11 10 9 29 29 H 1.08999 * 109.44245 * 172.37799 * 11 10 9 30 30 H 1.09003 * 109.50899 * 302.65296 * 13 12 11 31 31 H 1.08997 * 109.51167 * 182.50190 * 13 12 11 32 32 H 1.09003 * 109.46878 * 180.20572 * 16 14 9 33 33 H 1.08997 * 109.47745 * 300.21128 * 16 14 9 34 34 H 0.97000 * 120.00056 * 359.97438 * 17 16 14 35 35 H 1.08996 * 110.01669 * 58.60767 * 20 18 17 36 36 H 1.09000 * 110.48479 * 335.78115 * 21 20 18 37 37 H 1.08993 * 110.48802 * 98.42875 * 21 20 18 38 38 H 1.08994 * 110.75396 * 279.62399 * 22 21 20 39 39 H 1.09006 * 110.91220 * 156.32912 * 22 21 20 40 40 H 1.08999 * 110.48476 * 203.37509 * 23 22 21 41 41 H 1.09008 * 110.59642 * 80.79465 * 23 22 21 42 42 H 1.08997 * 110.03671 * 238.56858 * 24 20 18 43 43 H 1.09000 * 110.03364 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0747 -1.2112 0.1820 9 7 1.3453 -2.3766 -0.2325 10 6 0.1648 -2.4180 -1.1099 11 6 0.3684 -3.5461 -2.1340 12 8 0.6874 -4.7558 -1.4420 13 6 1.9080 -4.7010 -0.6997 14 6 1.7865 -3.6332 0.3934 15 1 1.0547 -3.9500 1.1363 16 6 3.1459 -3.4253 1.0639 17 7 3.0293 -2.3895 2.0934 18 6 4.1084 -2.0370 2.8199 19 8 5.1758 -2.5776 2.6218 20 6 3.9883 -0.9719 3.8792 21 6 3.5974 0.3737 3.2338 22 6 4.3866 1.4289 4.0480 23 6 5.7380 0.7184 4.3091 24 6 5.3491 -0.7531 4.5633 25 1 -0.4849 0.8401 0.0004 26 1 -0.7276 -2.6147 -0.5157 27 1 0.0587 -1.4650 -1.6280 28 1 1.1846 -3.2863 -2.8082 29 1 -0.5481 -3.6854 -2.7074 30 1 2.7297 -4.4455 -1.3687 31 1 2.0991 -5.6712 -0.2412 32 1 3.4710 -4.3589 1.5231 33 1 3.8759 -3.1144 0.3167 34 1 2.1755 -1.9574 2.2521 35 1 3.2418 -1.2631 4.6182 36 1 3.8990 0.3963 2.1866 37 1 2.5249 0.5441 3.3267 38 1 3.8793 1.6509 4.9867 39 1 4.5345 2.3385 3.4659 40 1 6.2276 1.1406 5.1867 41 1 6.3871 0.7965 3.4369 42 1 5.2627 -0.9371 5.6342 43 1 6.0965 -1.4170 4.1288 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050795514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:54 Heat of formation + Delta-G solvation = -68.557015 kcal Electronic energy + Delta-G solvation = -24073.271634 eV Core-core repulsion = 20732.631569 eV Total energy + Delta-G solvation = -3340.640065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.70538 -38.47295 -36.76171 -35.27124 -33.55254 -31.62285 -30.48371 -29.00362 -28.39410 -27.16925 -25.31754 -23.46380 -22.01879 -21.10555 -20.43133 -19.72152 -18.96441 -17.18966 -16.43133 -15.91879 -15.70754 -15.41789 -14.80815 -14.62413 -14.53196 -14.05647 -13.86843 -13.62555 -13.24824 -13.08572 -12.88817 -12.54190 -11.91018 -11.60851 -11.40258 -11.15330 -11.07170 -10.95064 -10.89728 -10.74562 -10.57510 -10.50389 -10.42503 -10.32695 -10.21548 -10.04673 -9.67430 -9.26801 -8.94473 -8.67255 -8.23561 -6.74005 -5.92781 -3.42404 3.22429 3.25067 3.34913 3.37205 3.85181 4.32484 4.52425 4.74733 4.86550 5.04175 5.14735 5.24942 5.50491 5.60381 5.60625 5.67356 5.71210 5.76068 5.85602 5.86641 5.87726 6.01445 6.07152 6.11377 6.14564 6.16893 6.22439 6.30187 6.33372 6.44515 6.51384 6.56841 6.59006 6.75735 7.05215 7.16749 7.46254 7.68913 7.85240 8.25338 8.29557 8.88325 9.03749 9.64081 10.23841 11.13683 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.007139 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.846175 B = 3921.125578 C = 5228.703412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.012 3.988 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.293 1.293 7 C -0.254 4.254 8 H 0.073 0.927 9 N -0.591 5.591 10 C 0.145 3.855 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.135 3.865 17 N -0.693 5.693 18 C 0.513 3.487 19 O -0.565 6.565 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.117 4.117 25 H 0.255 0.745 26 H 0.030 0.970 27 H 0.091 0.909 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.416 0.584 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -1.524 5.310 6.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.188 4.188 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.219 1.219 7 C -0.383 4.383 8 H 0.090 0.910 9 N -0.316 5.316 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.058 0.942 16 C 0.011 3.989 17 N -0.344 5.344 18 C 0.299 3.701 19 O -0.446 6.446 20 C -0.133 4.133 21 C -0.150 4.150 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.154 4.154 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.254 0.746 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.688 -1.928 5.150 7.226 hybrid contribution -0.017 1.438 -0.064 1.440 sum 4.671 -0.489 5.086 6.923 Atomic orbital electron populations 1.69984 1.05192 1.25638 1.53501 1.25120 0.95224 0.98095 1.00344 0.86612 0.79265 0.83982 0.78590 1.19794 1.20556 1.21899 1.19215 0.91383 0.83321 1.44419 0.90961 1.44097 1.32915 1.02951 1.51687 1.21486 0.89024 0.96735 0.90829 1.23426 0.99161 0.86541 0.95212 1.87797 1.41263 1.36085 1.65993 1.22865 0.86872 0.98706 0.93840 1.21430 0.93878 0.89317 0.93622 0.94183 1.21141 0.97453 0.90085 0.90223 1.46026 1.13055 1.39674 1.35673 1.20469 0.83919 0.83166 0.82547 1.90585 1.28059 1.56018 1.69904 1.21890 0.99511 0.95145 0.96721 1.22409 1.00799 0.91869 0.99890 1.22498 0.95861 0.98018 0.99815 1.22364 0.97289 0.95266 1.01142 1.22143 0.96433 0.97274 0.99595 0.93478 0.95220 0.89084 0.94103 0.90290 0.93531 0.89953 0.92484 0.91680 0.74628 0.89009 0.90811 0.90516 0.91554 0.91731 0.91971 0.91706 0.91964 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.68 11.18 55.49 0.62 -23.06 16 2 C 0.01 0.29 5.05 -17.43 -0.09 0.21 16 3 Si 0.89 20.01 28.16 -169.99 -4.79 15.22 16 4 H -0.27 -5.77 6.30 56.52 0.36 -5.41 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.14 7.01 -15.06 -0.11 -6.24 16 8 H 0.07 1.80 5.83 -52.49 -0.31 1.49 16 9 N -0.59 -13.40 3.02 -164.05 -0.50 -13.89 16 10 C 0.14 3.25 5.40 -3.32 -0.02 3.23 16 11 C 0.03 0.66 7.00 37.53 0.26 0.92 16 12 O -0.39 -7.63 10.74 -35.23 -0.38 -8.01 16 13 C 0.06 1.00 6.29 37.31 0.23 1.23 16 14 C 0.12 2.42 3.21 -67.42 -0.22 2.21 16 15 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 16 C 0.14 2.52 4.45 -4.04 -0.02 2.50 16 17 N -0.69 -13.02 3.71 -60.29 -0.22 -13.25 16 18 C 0.51 9.53 6.99 -10.98 -0.08 9.45 16 19 O -0.57 -11.94 15.21 5.56 0.08 -11.85 16 20 C -0.11 -1.72 3.30 -90.65 -0.30 -2.02 16 21 C -0.11 -1.82 5.48 -25.07 -0.14 -1.96 16 22 C -0.12 -1.70 6.91 -24.74 -0.17 -1.87 16 23 C -0.12 -1.60 6.83 -25.05 -0.17 -1.77 16 24 C -0.12 -1.64 6.40 -25.59 -0.16 -1.81 16 25 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 2.25 6.36 -51.93 -0.33 1.92 16 28 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.32 7.59 -51.93 -0.39 0.93 16 34 H 0.42 8.16 7.28 -40.82 -0.30 7.86 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.39 6.39 -51.93 -0.33 1.06 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.42 6.39 -51.93 -0.33 1.08 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -27.59 328.99 -8.28 -35.87 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.09 Total: 9.94 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.97 Total: 4.07 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.10 Total: -50.20 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.29 Total: -19.86 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.79 Total: 15.22 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.59 -8.28 -35.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050795514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.683 kcal (2) G-P(sol) polarization free energy of solvation -27.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds